Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00001493 |
| gene name | NA |
| gene type | misc |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030143.1 |
| NCBI id | CM030143.1 |
| chromosome length | 20516281 |
| location | 5889836 ~ 5900998 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0031966 | mitochondrial membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00001493 | False | 378 | mRNA | 0.53 | 5 | 5889836 | 5900821 |
| TU199235 | True | 639 | TUCP | 0.46 | 4 | 5898235 | 5900998 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00001488 | vip,LOC107597641,LOC107679148,LOC107655780,LOC107585469 | coding | upstream | 63341 | 5819606 ~ 5826495 (+) |
| AMCG00001477 | acoxl | coding | upstream | 332369 | 5537336 ~ 5557467 (+) |
| AMCG00001476 | acoxl | coding | upstream | 387568 | 5491326 ~ 5502268 (+) |
| AMCG00001475 | NA | coding | upstream | 403381 | 5481284 ~ 5486455 (+) |
| AMCG00001478 | NA | coding | upstream | 420898 | 5465896 ~ 5468938 (+) |
| AMCG00001498 | NA | coding | downstream | 89264 | 5990262 ~ 6001627 (+) |
| AMCG00001497 | LOC107578948,LOC107682299 | coding | downstream | 184602 | 6085600 ~ 6086340 (+) |
| AMCG00001500 | NA | coding | downstream | 284202 | 6185200 ~ 6191972 (+) |
| AMCG00001501 | NA | coding | downstream | 293264 | 6194262 ~ 6198251 (+) |
| AMCG00001510 | NA | coding | downstream | 324997 | 6225995 ~ 6253221 (+) |
| G158184 | NA | non-coding | upstream | 155277 | 5708092 ~ 5734559 (+) |
| G158104 | NA | non-coding | upstream | 466744 | 5421471 ~ 5423092 (+) |
| G158089 | NA | non-coding | upstream | 574600 | 5313068 ~ 5315236 (+) |
| G158014 | NA | non-coding | upstream | 1001484 | 4888114 ~ 4888352 (+) |
| G157985 | NA | non-coding | upstream | 1014692 | 4872695 ~ 4875144 (+) |
| G158332 | NA | non-coding | downstream | 495922 | 6396920 ~ 6398188 (+) |
| G158337 | NA | non-coding | downstream | 508023 | 6409021 ~ 6410557 (+) |
| G158342 | NA | non-coding | downstream | 521002 | 6422000 ~ 6422235 (+) |
| G158364 | NA | non-coding | downstream | 608296 | 6509294 ~ 6509630 (+) |
| G158435 | NA | non-coding | downstream | 886406 | 6787404 ~ 6788972 (+) |
| AMCG00001489 | NA | other | upstream | 18406 | 5869975 ~ 5871430 (+) |
| AMCG00001486 | NA | other | upstream | 256487 | 5593680 ~ 5633349 (+) |
| AMCG00001480 | NA | other | upstream | 506772 | 5366005 ~ 5383064 (+) |
| AMCG00001457 | NA | other | upstream | 1237836 | 4623467 ~ 4652000 (+) |
| AMCG00001430 | srf | other | upstream | 1827503 | 4045356 ~ 4062333 (+) |
| AMCG00001509 | sf3b5 | other | downstream | 493105 | 6394103 ~ 6395960 (+) |
| G158478 | NA | other | downstream | 973770 | 6874768 ~ 6876578 (+) |
| G158537 | NA | other | downstream | 1122390 | 7023388 ~ 7028141 (+) |
| AMCG00001550 | NA | other | downstream | 1770316 | 7671314 ~ 7679783 (+) |
| G158672 | NA | other | downstream | 1835517 | 7736515 ~ 7737890 (+) |
