AMCG00001498


Basic Information

Item Value
gene id AMCG00001498
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 5990262 ~ 6001627 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001498
gtCTGAGAGCGCCCAGGTCCCTCAGCCCTTATTTCCCGTGGAGAGCTCGGGTTGGGTGCGCACAGACAACTTCACTCTCTCCACAGCTCCTCTCTCCCGGCTCTCTCTCCGTGTCCAGCTCGTCGTGCTACCCGTGCTCCGGAGATGTTCCGCTGCGGGATCGCCTTCCCCCGGTGCCGCTGGATCCTGCCGCTGGTGCTGCTGTTCGCGGTCATCTTCGACCTGATCGCCATCTGCGCCCAGTCCGGCTGGGTGGAGGAGGAGCACAGCCAGCACTATGCCAGCATGTGGACCCAGTGCCGGAGCTATGGAGGAAACGACGACTGCACCTCCCTCATGTCTTTCTCCTGGGCCCAAGCTGTTGCTGCCCTGATGATTATTGGTCTCCTCATCCTGCTGTTGGCCTTCATCCTCTCTGTAGTGGCTCTCTGTTGCACCCTCAACATCACCCTTCTTCCAATCATTGGCACACTCCTCTTCATTGCTGTAATTGTGCAGATCATTGCCCTGGTCGTCTACCCCTGCAAATTCAACGAGCTCATCTACGAGGGCCACTACGACTACTCCTGGGCGTACGGCTTCGGCTGGGGCGCCACCGTGCTCATGATCGGCTGCGGCATCCTGTTCTGCTGCCTGCCCCGCTACGAGGATGACTTAACAGGCCTGGCCAAGACCAAGTACATCTACAGCTCCGAGTAGAGCGAGAAGCATGGGAGAAACTTTGCGCTCCCCCTGATGGAACAGAACTCTCGTCTCACTCCCAATACGGATGCCATCACTGCAAATCCCTCCACGGCAAAGTTTGTTTTCCACTtcccacacttttttttgtttgcccCACCCATCTAACATAACTCAACCTTTCCCAGGTCCATGCGTTATATATCCGGAATGTATTCTGGTGTccgaaatggaaaacaaactgagGCCAAAATGTGAGAAGCCAAcctgtgcttttctttcgacTATTTTACACTTGATAAGACCCAAAGCCTCGTCCCAGGTTTTTATTTGGATTAGAAAATAGAAtggatggggaaaaaaaaacaggaaacagtgaagaactgttgttgttttgtatttgctcTATTTTGTCCACTGCACTAAGCTTATAGCATTAAAAAAACCTtataggataaaaaaaaaaactatattctGTCACTCAAGGGCTTCGTATAGCAGAACAGTTTTTCTTTGTATAATAAAGTGAGGTACGGTACATAACTTTTTTAGGATTTCAAACCGCTTGTCAcagtttgttcatgtttatagTAAATTTCTGAGAATATTTTAAGTATGCATACTGGAAAAGAGattattgttcattaaaatgcattttagaaaGAGCTTTGAATTCAGACTGCAATTGCAATGTGCTTTTAGTCtacactgtataataaaaagACGTGATCATAAACTTCTAAAGTATGActattttccaaatgtattgctttttaaacacaACTATGttctaagtttttttttttttacatttaagggatatagaatataaaatgtttgtCAGATTTATTTGGGGGGGTTAGCTTTTTgtctgaattgtatttttgaatgttgTTGATAAGGTTACCAAAAATCTCTGcaaacttttaataataaaaaaaactaatacatcataaaaaggatcagttgttttattatatatattgctgaGGTGAAATAATTTGGGACTTGCGAGATGTAATTAAATGGGTTATGGCTCAGTGGCTGTAGCTGACAGTGGTTGTGTGAGGAAGTCTAAAAAAGATTAGGAACAGCTGTGGAAATTGATTTCTACCACATCATCTGGGTCACCGAAGACACTCAAGACATGGCTGTCAAAGGGCTTATATAAAATTGGATGGGTTTCCAGTTGTTAAACCTGTCGAATATATAGTAATGGTTAGTGAtataacttttaattaaataaaaacgtgataaatattttgaatgataTTGGAACGTCACATATTCTAATTAATAATCAGTAATAGACGGTAGAGGTATGTCAGTACTAGAACCTACCTCATTCAAAACAATTTGATATAATGAATTATGACATGAATTATATAATGAATTTTGGGGGCTATCGATGGTTTTATTCAGATACACTTCTAACTTTCTTCTCTATTGATTTGGAAGGTCAAAAGTCAACATTATTCATAAACTGAATTCTTTGCCTACTgtgtaattgcatttcaatgaaAGCAAAGATTGAATTTATGAAAACAGCAAGAAATATGGTTTTGAATGGGATCCATATCATTCTAAAATACTTTTTAGAAGTGCGGACatggaaattagttttttttaatgttccctgAC

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K10136 PERP; TP53 apoptosis effector

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001498 True 2322 mRNA 0.41 3 5990262 6001627

Neighbor

gene id symbol gene type direction distance location
AMCG00001488 vip,LOC107597641,LOC107679148,LOC107655780,LOC107585469 coding upstream 163767 5819606 ~ 5826495 (+)
AMCG00001477 acoxl coding upstream 432795 5537336 ~ 5557467 (+)
AMCG00001476 acoxl coding upstream 487994 5491326 ~ 5502268 (+)
AMCG00001475 NA coding upstream 503807 5481284 ~ 5486455 (+)
AMCG00001478 NA coding upstream 521324 5465896 ~ 5468938 (+)
AMCG00001497 LOC107578948,LOC107682299 coding downstream 83973 6085600 ~ 6086340 (+)
AMCG00001500 NA coding downstream 183573 6185200 ~ 6191972 (+)
AMCG00001501 NA coding downstream 192635 6194262 ~ 6198251 (+)
AMCG00001510 NA coding downstream 224368 6225995 ~ 6253221 (+)
AMCG00001511 NA coding downstream 380340 6381967 ~ 6383208 (+)
G158230 NA non-coding upstream 98016 5892046 ~ 5892246 (+)
G158184 NA non-coding upstream 255703 5708092 ~ 5734559 (+)
G158104 NA non-coding upstream 567170 5421471 ~ 5423092 (+)
G158089 NA non-coding upstream 675026 5313068 ~ 5315236 (+)
G158014 NA non-coding upstream 1101910 4888114 ~ 4888352 (+)
G158332 NA non-coding downstream 395293 6396920 ~ 6398188 (+)
G158337 NA non-coding downstream 407394 6409021 ~ 6410557 (+)
G158342 NA non-coding downstream 420373 6422000 ~ 6422235 (+)
G158364 NA non-coding downstream 507667 6509294 ~ 6509630 (+)
G158435 NA non-coding downstream 785777 6787404 ~ 6788972 (+)
AMCG00001493 NA other upstream 89264 5889836 ~ 5900998 (+)
AMCG00001489 NA other upstream 118832 5869975 ~ 5871430 (+)
AMCG00001486 NA other upstream 356913 5593680 ~ 5633349 (+)
AMCG00001480 NA other upstream 607198 5366005 ~ 5383064 (+)
AMCG00001457 NA other upstream 1338262 4623467 ~ 4652000 (+)
AMCG00001509 sf3b5 other downstream 392476 6394103 ~ 6395960 (+)
G158478 NA other downstream 873141 6874768 ~ 6876578 (+)
G158537 NA other downstream 1021761 7023388 ~ 7028141 (+)
AMCG00001550 NA other downstream 1669687 7671314 ~ 7679783 (+)
G158672 NA other downstream 1734888 7736515 ~ 7737890 (+)

Expression


Co-expression Network