AMCG00001500


Basic Information

Item Value
gene id AMCG00001500
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 6185200 ~ 6191972 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001500
gATTCTCCAGGACTTCCTCCCCCTACAAATGTGTCCGTGAGCTGCCACAATTTAGAAACTGTTCTGCACTGGGACTACAGCCCTGCCACGCCAGATCCAGTGTTCACCGTGGAACTCTTAAGATATAACGAAGGAGACTGGAAACCAGTCTCTGGATGCAACAGGATATCCAAATGGCAATGTAATGTCTCCTCTTATATCACTGAAGTTGAAAACACCTACAGTCTGAGAGTTAAAGCAGCTGAGGGATCAGCTGAATCGAAGTTTGAAATGATTCCAGAATTTTTCACCTACAGTATAAGATATGAGGGAAAGCTCTGCACATGGGATTTCCCAGCTGTCAATGTTACAGCACATGGGAAAGACATCCATCTGCAGTTTCCTCATCCCCGTGAAATATATAAAGGAAGAAACCtaactttgaaaaaatataaaggactggaatacaaagtgcagtatTGGAACGAGAGTCACCATAAGatGGGGTTTGAGTGTGCTTTTGATAAGGCCCACCCAATATGTGAAAGGAAATTTTCAGTTAGTGAAGAGCGAGACAGACACTGCTTTTCTCTAAGTGGCACCATGGGATACAACATTGTTCTGGATGAGACTCAGGCCATATGTGTGGATGGAAAGCCCAAAAAACCTGTACTTGATGCAACTAAAATTACAATCATAGTGGTCAGCCTTactgctgctgttttaatttttttgtttgtgactGGATGGATCATTTTCCGGCGTCTGACGATGCAACCCACCTCTGTGCCCAAGTCTCTGGTATCAATGCTGACAGGAAATAGGGCAGGAGGCAGCACCATAAGGAATGAGCATGAGGATATTTCGGAGGTGCGTACCATTGGAACCTCCGAGAGTGCCCAGAAGCTGCTCTATGAAGATGCAAAGACCCCCAGCCCCAGCAGCCCCTCATCAGATTGTGTCCGCTGTAAGATCGGCCAGGAGAACTTTGAGGAATCCAGCGGCAGCTTGATGGTGGACTTGCCAGAAAACCCCAACGTCATCTCTGCCGTGACTGTGGATGCCAAGACCACTCTACCGTCAGACGTGTCCGGCAGCGGCGGTCCAGGCAGAGAGGACAGCGGCAATTGttctttcttcccctcctctgGATACGATAGACCCCAGGTGCTTCAGGTGGAACTGAGCCCTGGAGACACGGTGGAGGGGTATCGCGTGGCCCAGCTGTGAGAGTGCAGAGACCAGCTGTAGTTGTCAGTGACTAGGTTTCTTAAGGCAAGTCCTTAGTGACTAACATACACGCATGTCAACAATGTAGTCTGCACTGTCGTATTGTAATGAGTGTCCATGCCTACTTTGAAAGCTGATAAAGCAGAACACTTTAAAGGTTTGGGCAAACGGGCATCTTTTGACTGCCACAAGAGGGGTCATAGCTTTTGCCAGCTTGTTGTCTTATGTTGCCAGCCTTGTCAACATGCCAGCAGCCACATGGCAACACCCCAACAAGATGGTGtcaattttatttgtcttttggCACTACTTTGTCTGATGGCAAGCAAAGACAAAATACCCTTATGAGCAAGCTGGCTCATTTTTGTGCTGTGAATTTCTGAATGTAAGAAAAGGTATGGATTAGGGGTGACTGTTCAGCCTGATCTGTGGGTTCCTACTAGCTAACATTTCAAAGCTCGCAGCAATGTTTTTTATGAAGCATCTCAAGGAATCAGCTTCCCCAGTACCCCTCGGGATGGGAACTTCTAGACAATCGATCAATTAACCTGAACAATGTTCCGTTATAATTGAGTTGCAGATGTTCAAAGGCCTGAAGTCAGTGGAGTTCCCTAAAAAATACTTCAACCCACAAACCCACAACCCCACTGTGCAACTTACCTTTCAAATCAGAAATTCATAATGTTACATATGTCCCATATCTGCTGCAGTTATCTAGGTCTTGATTGGGTCTTGACAGTTTGGACACCCTTAGAGGTGAACACAGTGACAATGCaatgtaatgcaatgcaaaGCTTGGGCTCTGTTTGGAGAAAGAGCTGTGAAACTGCACCTTACCTATTTgccaaatatacatttatacagtaATCCCTCACCAACCGCGGGGTTACGTTTTTGATAACCCCTGTGGTCGGCAAAACCGCGTTTGGTAAATACATGAGAAATTGGGGGTTTGGATCTTCACAGTTATACTTATCAAAACCTGAAGCTGCAATTTCCTGCactaaacacaaatgaaaaacagtaacataaaaacaacacagagactAGAACATACTGGGTAATGCAACATgtgaaaaaagtaatacaattataacatAAAAGGCAtagttttatttacttatcGCACATTTAGGGGCCATGATTGCAACACTGCAAAATCACAATTGTGCTACGCTGACACGGCGGGAGACAATGCCAGGAGGGTTTGGTGCTGACGAGCTAGGAgtgcagaaaaatacaaacgATGGTGTGGAAGCAAATGCGTAATATGTGTCTATGAAAATCTGCTTATACACTAGGGATGAGACCGATCAGTCGAACATTTGACTTTTCATTAACGATGCCAACATTTAGGTCCCTAAATCAGAAACAGACATTAACAGGGCATTCGAAACCAGGAGAGGGAACTTATtggttaatttgttaatttccaACATAATCAAGTGAACAGATGCAGAAGGTTGTAAAAGGAACAATCCAGCATTCgagggggaggaagaaaaatgtatctgttgaTTTTAGTTTAAAGCCTGTTCTGTTGAGTGCCTCTCTGTGTAGAGCTAATGAAGACTGAatggagggtgggatttgttgtctgtgattggctagaATGTGCCTTGACTAACGATGGCTTCTTCACAGAAAAGaactgcatggaaatactttgacaaagtaaatgaaaacacttaagTATAAAATATGCGCAGTGCAATTTAACTACCATCATCAGCTGTATATTAACCCAcctaaaaataactgaatacaataaaaaaaataaaaaaaaagtgctgtggTCAGTTAGATGTCAACCTTAATagataattttaaattgtaattaacgGAAAACGTTGTGACAATATCGGGGAAAAAATAACGCAAAATACGAGAGCAACACGAGATCTGTGAGAGTTTACAGGTAATGATTATTTCTGTATGTCTTAGGAAGGTATTTATTACATAgcttaatgtttattaatgtttgtattgtgttagctaagtattttaaaataaagttcaggaATGATTGCCACTTTGCACTATTTCGTTTTTAATGTACGTCTCATTTTGAATGTGGGGGCGACTACTCGAATAGTCATCGACAACAGCTGAGGAATTATCGAAAGTCATAATGTAATTAACAGATCTAATACTGCGGTTGGCAAATTGGTGTTCAAAAGGAAAAACGTATACATGAATTCCACGGTTGGCAAATATGTGTTTGGCAAGTGATTACTGTgcgtaatatatatatatttttaaacatcattACTGTTGCTGAGAAGTCTGAAGAAAGTACTAATGTGGAGAGTTTCCATTTACAGAGCCTGCTTTTCTGTTATGCATGTTTCCTGTGTACAGTGACGAACCATTCTAACTATACAACAACTACAGACTAATTCACTGATAGTCActtctcaaatacattttccgTCAAAGACttgtgtacaaaaataaataagttgtcTGAGCTCAGTAAATCAATTTTGCGtgatgctttttttatttatttgcaagcaTTAAGCCAAGAGGGAATGTTTATTGTCACTGCAATAAATCATTCTGGATCTACAAGCATTTGACATTGTGTTACGATAGCACACTTTTGACCAGAAATGAATCTATTATAAACTGTGCAAGTGCGGTTGGGATTTAGGGAAAACAAGCATTCATATAAAAGCGTCACCGCTGTGGGTTTTGAATATGTGAATCAAGTCCTTACACTATCACCTGTGTACATGAACGAGAATCAATAGACCAGACTTCCTGTTCGTGTTGCATAACCTTAAATTCATATTTCTTCCAGTATGACCTCGCTTACAGTCAGTTACCTGAATAGGATGGCTTTCGGTTTCTATGCCAGTAAAGCATTTTTGCAGATACAGGTATACAAGTCATCTTGCCAGGGTTGTTTATTTGGACCAGTGCTTTAGGTCACTGTCTCTCATCC

Function

GO: NA

KEGG:

id description
K05132 IFNGR1, CD119; interferon gamma receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001500 True 4159 mRNA 0.41 6 6185200 6191972

Neighbor

gene id symbol gene type direction distance location
AMCG00001497 LOC107578948,LOC107682299 coding upstream 98860 6085600 ~ 6086340 (+)
AMCG00001498 NA coding upstream 183573 5990262 ~ 6001627 (+)
AMCG00001488 vip,LOC107597641,LOC107679148,LOC107655780,LOC107585469 coding upstream 358705 5819606 ~ 5826495 (+)
AMCG00001477 acoxl coding upstream 627733 5537336 ~ 5557467 (+)
AMCG00001476 acoxl coding upstream 682932 5491326 ~ 5502268 (+)
AMCG00001501 NA coding downstream 2290 6194262 ~ 6198251 (+)
AMCG00001510 NA coding downstream 34023 6225995 ~ 6253221 (+)
AMCG00001511 NA coding downstream 189995 6381967 ~ 6383208 (+)
AMCG00001512 NA coding downstream 349701 6541673 ~ 6545924 (+)
AMCG00001507 pgbd5,LOC107743535,LOC107552948,LOC107725485,LOC106589661,LOC106610742 coding downstream 371836 6563808 ~ 6591290 (+)
G158230 NA non-coding upstream 292954 5892046 ~ 5892246 (+)
G158184 NA non-coding upstream 450641 5708092 ~ 5734559 (+)
G158104 NA non-coding upstream 762108 5421471 ~ 5423092 (+)
G158089 NA non-coding upstream 869964 5313068 ~ 5315236 (+)
G158014 NA non-coding upstream 1296848 4888114 ~ 4888352 (+)
G158332 NA non-coding downstream 204948 6396920 ~ 6398188 (+)
G158337 NA non-coding downstream 217049 6409021 ~ 6410557 (+)
G158342 NA non-coding downstream 230028 6422000 ~ 6422235 (+)
G158364 NA non-coding downstream 317322 6509294 ~ 6509630 (+)
G158435 NA non-coding downstream 595432 6787404 ~ 6788972 (+)
AMCG00001493 NA other upstream 284202 5889836 ~ 5900998 (+)
AMCG00001489 NA other upstream 313770 5869975 ~ 5871430 (+)
AMCG00001486 NA other upstream 551851 5593680 ~ 5633349 (+)
AMCG00001480 NA other upstream 802136 5366005 ~ 5383064 (+)
AMCG00001457 NA other upstream 1533200 4623467 ~ 4652000 (+)
AMCG00001509 sf3b5 other downstream 202131 6394103 ~ 6395960 (+)
G158478 NA other downstream 682796 6874768 ~ 6876578 (+)
G158537 NA other downstream 831416 7023388 ~ 7028141 (+)
AMCG00001550 NA other downstream 1479342 7671314 ~ 7679783 (+)
G158672 NA other downstream 1544543 7736515 ~ 7737890 (+)

Expression


Co-expression Network