AMCG00001509 (sf3b5)


Basic Information

Item Value
gene id AMCG00001509
gene name sf3b5
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 6394103 ~ 6395960 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001509
ATGACGGACCGCTACAACATCCACAGTCAACTGGAGCATTTGCAGTCCAAGTACATCGGGACGGGCCACGCAGACACCACCAAGTGGGAATGGCTGGTAAACCAGCACAGGGACTCCTACTGCTCTTACATGGGCCACTTCGACCTGCTCAACTATTTCTCCATCTCGGAGAATGAAAGCAAAGCCCGGGTCCGCTTCAACCTGATGGAGAAAATGCTGCAGCCTTGTGGTCCCCCTGCGGACAAACCAGATGACGCTTAG
>TU199345
GAACGGCTTAACACGTAAGAGAAGAGTAGACGGAAACGGTACATCTGCTCATCTTGCCCGGAGATTTTATTTGCTTCTCTTCTAAATTATCACTTGTTGGACAATTGAAAATGACGGACCGCTACAACATCCACAGTCAACTGGAGCATTTGCAGTCCAAGTACATCGGGACGGGCCACGCAGACACCACCAAGTGGGAATGGCTGGTAAACCAGCACAGGGACTCCTACTGCTCTTACATGGGCCACTTCGACCTGCTCAACTATTTCTCCATCTCGGAGAATGAAAGCAAAGCCCGGGTCCGCTTCAACCTGATGGAGAAAATGCTGCAGCCTTGTGGTCCCCCTGCGGACAAACCAGATGACGCTTAGAGACCGGACATAGGACCTGGCcgaaaactgacattttcagaACGGCACCAAGTGCTCATTACTGTTAATGAACCGTCattatttagctttttgttccaatgtaactttttattttaaccccTCAAAAAACATGgactcaccccccccccctcaactAAACAGGTTATAATTGTTAAATGGTAGTAGTGGATGACcttcaatattgtattttttagtttGCAATAAGTTAATATTGAATCATATGGGCTCTTATTTGCCATTCTATTATGATTaaatcttcagttttatttgggGATATATTTATATCAGTGTTCGAAGTTTACAAGCTGTTTGTCCAAGGTATGGCCAGTGGATTACAGGAGGCTAACTAATGTATTGGCAGTGCTCataaaattaattcataaaactgcaaaattatGACCTTTCTATTAGACTACAGTTGGATGGGATTCTTCATTATTCAAGTTGTCAAGTCACTTAGGaatcaaataaatgtgaatgtCTTGCCACAAAGTGTCCAAGGGGCCCAATGCAATGAGGCATATTAATGAGTCAAAACAGAAGTAGTTGTCACATTATTATAGTCTAATTGTTGCACTGCTATTTCTCAACAAAAGCCACAAAATCCATCAGTTAAAAAGCATCTGTTCAACTGTTTATAATTAGTTGACATATTAAAGGTAATGTCCTGCTTTG

Function

symbol description
sf3b5 Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of U2 snRNP and precatalytic spliceosome. Orthologous to human SF3B5 (splicing factor 3b subunit 5).

NR:

description
PREDICTED: splicing factor 3B subunit 5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001509 False 261 mRNA 0.54 1 6395004 6395264
TU199345 True 1067 TUCP 0.40 2 6394103 6395960

Neighbor

gene id symbol gene type direction distance location
AMCG00001511 NA coding upstream 10895 6381967 ~ 6383208 (+)
AMCG00001510 NA coding upstream 140882 6225995 ~ 6253221 (+)
AMCG00001501 NA coding upstream 195852 6194262 ~ 6198251 (+)
AMCG00001500 NA coding upstream 202131 6185200 ~ 6191972 (+)
AMCG00001497 LOC107578948,LOC107682299 coding upstream 307763 6085600 ~ 6086340 (+)
AMCG00001512 NA coding downstream 145713 6541673 ~ 6545924 (+)
AMCG00001507 pgbd5,LOC107743535,LOC107552948,LOC107725485,LOC106589661,LOC106610742 coding downstream 167848 6563808 ~ 6591290 (+)
AMCG00001515 LOC107580738 coding downstream 340137 6736097 ~ 6741940 (+)
AMCG00001517 abcb10 coding downstream 347745 6743705 ~ 6752893 (+)
AMCG00001518 NA coding downstream 357771 6753731 ~ 6770900 (+)
G158230 NA non-coding upstream 501857 5892046 ~ 5892246 (+)
G158184 NA non-coding upstream 659544 5708092 ~ 5734559 (+)
G158104 NA non-coding upstream 971011 5421471 ~ 5423092 (+)
G158089 NA non-coding upstream 1078867 5313068 ~ 5315236 (+)
G158014 NA non-coding upstream 1505751 4888114 ~ 4888352 (+)
G158332 NA non-coding downstream 960 6396920 ~ 6398188 (+)
G158337 NA non-coding downstream 13061 6409021 ~ 6410557 (+)
G158342 NA non-coding downstream 26040 6422000 ~ 6422235 (+)
G158364 NA non-coding downstream 113334 6509294 ~ 6509630 (+)
G158435 NA non-coding downstream 391444 6787404 ~ 6788972 (+)
AMCG00001493 NA other upstream 493105 5889836 ~ 5900998 (+)
AMCG00001489 NA other upstream 522673 5869975 ~ 5871430 (+)
AMCG00001486 NA other upstream 760754 5593680 ~ 5633349 (+)
AMCG00001480 NA other upstream 1011039 5366005 ~ 5383064 (+)
AMCG00001457 NA other upstream 1742103 4623467 ~ 4652000 (+)
G158478 NA other downstream 478808 6874768 ~ 6876578 (+)
G158537 NA other downstream 627428 7023388 ~ 7028141 (+)
AMCG00001550 NA other downstream 1275354 7671314 ~ 7679783 (+)
G158672 NA other downstream 1340555 7736515 ~ 7737890 (+)
G158676 NA other downstream 1350721 7746681 ~ 7746980 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) sf3b5 sf3b5 misc NC_047597.1 CM018543.1 9224876 ~ 9228884 (-)