AMCG00001517 (abcb10)


Basic Information

Item Value
gene id AMCG00001517
gene name abcb10
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 6743705 ~ 6752893 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001517
GGCGGGGTGACCTTAACTTCTGCAGAAGCGGTTTCGGAGGGGCGTGCTCGGCGTTTTGGTGGGCGTTGCACCCATTTCGCGTTATTATCACATCTGTTTCCAATGTGCTGGGGAGAGATTGCAGAGGAGATGCGGGGGGGATCTGGCAGCGCAGTGTGATGCGCCGCTCGGCTGGAGGCAACATGATAAGAGCCCGACCGCGACAGATAGGCTGGATTGCAACCGACACCAAAGTCACAATGATCGGAGCAGCGCCTTCACTGCCTTCCCTGCTCTGAGGAGAAGAGCAAACTCGCACCCGGGCGATTTCGCTTCCGTGCAATGAGGATCGCGCCCTTGACTGTGTCGCAGACTCTTGGTTTTCGCTGGATTTGCAGACTGACCGACGGTGAACTCGCGAATTGTGCACGGGATGTACACACGTTGTGTCCTCAACCTGGCCGGTCCGATACGAGTGGGCTTGCCGTGGACCATGTATAGTTGCGCCAGCCTGCGGGGGTATGCCgccagtgccagtgccagtgccagtgccagtgccagtgccGGGCAGGGGTTGAGCTGGTTTCGGGTCAAGAGGCGCCGGGGATTGGGCGACAGCAGATGTCTGAGTGGTTTCATGGGAATCGGTTTAGGAAACGCCGTCTGTCCGTCATCTTTCCCCGCGTCCAGGGCACATCCACTTCTTTTCTCCGGCTATACATTGTCCATACATTCGCCAGGCAGGTTTGCCAGATGGATCGCATCGTCGGCTTCAAAGCCAGAAGCTGGACAACCTGAAGGGGTGACGGAAGCCGAGAAGAAACCCAGCCGGCTTCTTTCCGCGGACGGGAGACGGCTGCTCCAGCTGGCACACCCGGAGCGGGGGCGACTGACGGCCGCCTTGGGTTTCCTGTTGGTTTCCAGTACCGTCACAATGTCGGCGCCCTTCTTCCTGGGCAAGGTGATCGACACCATCTACACGAGCCCGGCGCAGGACCTGAGCACCTCTCTGGGCAGCCTATGTGCCATGATGGCCGGGGTGTTCCTCTGTGGGGCAGCGGCCAACGCTGCCCGGGTCTATCTCATGCAGATCTCGGGACAGCAGATTGTGCGCAATTTACGAGAATCCCTTTTTTCCTCAATTTTGAGGCAGGAGGTGGGCTTCTTTGACCGGACTCGCACCGGCGAGCTCATCAACCGCCTGTCCGCCGACACGGCCCTCATCGGCCACTCTATCACCGACAACCTCTCCGACGGCCTCCGCGCTGTAGCTCAGGCAACAGCTGGGGTTGGCATGATGTTTTATGTGTCTCCCAGCCTTGCTGCCTTTGTCCTGATGATCGTGCCCCCGCTTGCAGGCCTGGCAGTGGTCTACGGCAGATATTTGCGCTCGCTGTCCAAGCGAACTCAGGACTCGCTGGCTGAGGCCACACAGTTGGCCGAAGAGCGGATTAGCAATTTAAGAACGGTGCGAGCGTTCGGGAAAGAGTTAATTGAGGTGGAGAAATATGTGGAAAAGATCAACTACATCCTGCACCTGGCGAAGAAAGAGGCGGTGACGGGGCTGAGCGGCAACATGATCGTGCTCTCTGTGCTCTACAAGGGAGGCTTGCTGATGGGCAGCGAGCACATGACGGTGGGCGAGCTCTCCTCCTTCCTCATGTACGCCTTCTGGGTGGGGGTGAGCATCGCAGgtCTCAGCTCCTTCTACTCAGAGTTAATGAAGGGGTTTGGAGCTGGCGACCGGTTGTGGCAGCTGCTGGATCGAAAGCCCGAGTTTCCTCTGAATGAGGGTGCTGTGCTGAGGCCAGAAGAGCTGAAGGGGGCTTTGGATTTCCGCAACGTGACGTTCTCGTACCCCACCCGCAAAGATGCCCCTATTTTTCAAAACCTCAGCCTGTCCGTGCCGGCCGGCTCCGTCATGGCGGTCGTAGGCCCCAGTGGTTCGGGGAAGTCCACGTTGGTGTCTCTGCTGCTAAGACTCTACGACCCCGACTCTGGTATGATTACTGTCGATGGGCTCAACGTACAGGATCTGAATCCATTCTGGCTGCGGAGCAACATTGGGACTGTCAGTCAGGAGCCCGTGCTGTTTTCCTGCTCCATCGCAGAGAACATTGCATATGGCGCACAGGACCCCTCCCAGGTCTCGGCTCAGGACATCCACCGGGCCGCCCAAATCGCCAACGCAGACCGCTTCATCCAGGGCTTCCCCAGGGGCTATGACACGGTGGTGGGCGAGAAAGGCGTTCTTCTCTCAGGCGGTCAGAAGCAGAGGATTGCGATAGCTCGGGCTGTACTCAAGAATCCCAAGATACTTCTACTGGATGAAGCCACCAGCGCTCTGGATGCAGAGAATGAGTTCCTGGTCCAGGAAGCCCTGGAGCGGCTGATGGAGGACCGCACTGTCCTCATCATCGCCCACCGGCTCTCCACCATTCAGAACGCGGACGCTGTGGCCGTGCTGGACCAGTGCCGCGTGGTGGAGTGTGGGCGGCACGAGGAGCTGCTGGGGAACGCAGAGGGGCTCTTCAGGAAGCTGGTGGAGAAGCAGTCTTTTCTGCAGAACAACCACAAACACGTGGTGTGCGAGTAATTTTTCAAACACTGCACTGACGATTTTAAGGTTTTATGGTTCACGACGGACGATTGACGTACATTCCTGTCCACGTGCCGGTGATGGAAATGCAATTGTGATTTTACCTGTGACAGCAAGTACACTGAGAAAGTGTACTGTGAGAATGGCGTGATCGTAAAAGACCGcagattgaataaaaaaatcggaacaaaaaaaatcccaccCTACACTTAAAAGTAAAGAACACACAGGCTTCATTTTTCAACAGATTGATTTCAAAGTGCACCACAAAGATGTTAGAAACATCCCACAACCCACAATCACAGACATGCACCTCTGGGATGTGACGTGGTCACTGTCTGGAGTCCTCCCTTTACTAGAACACAAACCGCTCCAAAGATGTgtgtcttttattattgttttgttgttttcggttttgtttttacaaaattagGTGCAAAATGTTACTTTATGTGAAGgtactgtattcatttttagaCAATGAAGGCATATACTACAGGTCTTGCAACTATTAATGACCCTTCCTATGAAACACTCAATCATCAGATTAACTAAATTAATGTCCAAATATGAATTTCAGATTGTATTTCCACATTAAAAGGAAGCAAAATGCAGAGCACTCTTATTTTGCATATGTAGCCTCGGACAGAAGTAAAATATTGATAGAAATCAGTGGAAGCATTATTGGGGATATGTATGCCTATGAATGCAGATGTTTCTTCAGTTCAATAATGATCTAATGcaagaaataaacatatactTGTCAGAGTGAGCACAAAATTGGGTTAGCAGGGTCGAAAGTTGGCTTGAAACGACTGCCCACGACTGTTCCAACAAGATAAGATAATGGTTTTAATTCCTAATCGCACAACCGGACATAATGATTCAAGATCTGTTGACTTATATCCATAGAGTTCCCCATtttcaaaaaagaaatactCTTGGCCAAGGCTGAATATGTATGTAGAAACCGAAGATAAATTGGATTGCTAGATTTGATGTGCCTTGTTAAATTCAGAGAAGAGAgaatataaagtatataaagagtatttctttaaaataatgtgtttacagCTGCACTTTATGTGAAAGGGGTAATTAAGTATatgtttcatgtgtttttttaaattgcattttaccAATAGTTTAATGTTACAATATCAGGTTTTATATGAAGTGCCACAAAATACTGCTTTGTCTGGAGAAATATAGTTTAATCCCTACAGAtgaactgtattttgtattaaactgtATACTCTGTATGCTGTCAAGCATTCTGTATAGAGTGAATGTGTCAGACTTGATCATCCACCGTCTTTGTACTACTGATTTGTTCCTACTAAATACATGGAAGTGTTggattaattaatgaatgtcttGTGTGATTCTCAAATGTTGTCTGTGGACTCCTGTTCTTTCCCATCCAGAAATGAGCCCAATAATAGTCCTGAATTATGTGTTTCAGAGAGGTCTCCCg

Function

symbol description
abcb10 Predicted to enable ATP binding activity and ATPase-coupled transmembrane transporter activity. Acts upstream of or within erythrocyte differentiation. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human ABCB10 (ATP binding cassette subfamily B member 10).

NR:

description
PREDICTED: ATP-binding cassette sub-family B member 10, mitochondrial

GO: NA

KEGG:

id description
K05657 ABCB10; ATP-binding cassette, subfamily B (MDR/TAP), member 10

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001517 True 4055 mRNA 0.50 13 6743705 6752893

Neighbor

gene id symbol gene type direction distance location
AMCG00001515 LOC107580738 coding upstream 1765 6736097 ~ 6741940 (+)
AMCG00001507 pgbd5,LOC107743535,LOC107552948,LOC107725485,LOC106589661,LOC106610742 coding upstream 152415 6563808 ~ 6591290 (+)
AMCG00001512 NA coding upstream 197781 6541673 ~ 6545924 (+)
AMCG00001511 NA coding upstream 360497 6381967 ~ 6383208 (+)
AMCG00001510 NA coding upstream 490484 6225995 ~ 6253221 (+)
AMCG00001518 NA coding downstream 838 6753731 ~ 6770900 (+)
AMCG00001519 actc1a,act2,zgc:86709,LOC105024319,LOC100534413 coding downstream 19603 6772496 ~ 6776686 (+)
AMCG00001516 NA coding downstream 26769 6779662 ~ 6787020 (+)
AMCG00001522 NA coding downstream 108298 6861191 ~ 6863384 (+)
AMCG00001528 NA coding downstream 118871 6871764 ~ 6874095 (+)
G158364 NA non-coding upstream 234075 6509294 ~ 6509630 (+)
G158342 NA non-coding upstream 321470 6422000 ~ 6422235 (+)
G158337 NA non-coding upstream 333148 6409021 ~ 6410557 (+)
G158332 NA non-coding upstream 345517 6396920 ~ 6398188 (+)
G158230 NA non-coding upstream 851459 5892046 ~ 5892246 (+)
G158435 NA non-coding downstream 34511 6787404 ~ 6788972 (+)
G158539 NA non-coding downstream 275294 7028187 ~ 7036066 (+)
G158548 NA non-coding downstream 302955 7055848 ~ 7056061 (+)
G158555 NA non-coding downstream 405357 7158250 ~ 7160609 (+)
G158571 NA non-coding downstream 416640 7169533 ~ 7169767 (+)
AMCG00001509 sf3b5 other upstream 347745 6394103 ~ 6395960 (+)
AMCG00001493 NA other upstream 842707 5889836 ~ 5900998 (+)
AMCG00001489 NA other upstream 872275 5869975 ~ 5871430 (+)
AMCG00001486 NA other upstream 1110356 5593680 ~ 5633349 (+)
AMCG00001480 NA other upstream 1360641 5366005 ~ 5383064 (+)
G158478 NA other downstream 121875 6874768 ~ 6876578 (+)
G158537 NA other downstream 270495 7023388 ~ 7028141 (+)
AMCG00001550 NA other downstream 918421 7671314 ~ 7679783 (+)
G158672 NA other downstream 983622 7736515 ~ 7737890 (+)
G158676 NA other downstream 993788 7746681 ~ 7746980 (+)

Expression


Co-expression Network