Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00001522 |
| gene name | NA |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030143.1 |
| NCBI id | CM030143.1 |
| chromosome length | 20516281 |
| location | 6861191 ~ 6863384 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | description |
|---|---|
| K14801 | TSR4; pre-rRNA-processing protein TSR4 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00001522 | True | 1095 | mRNA | 0.56 | 6 | 6861191 | 6863384 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00001516 | NA | coding | upstream | 74171 | 6779662 ~ 6787020 (+) |
| AMCG00001519 | actc1a,act2,zgc:86709,LOC105024319,LOC100534413 | coding | upstream | 84505 | 6772496 ~ 6776686 (+) |
| AMCG00001518 | NA | coding | upstream | 90291 | 6753731 ~ 6770900 (+) |
| AMCG00001517 | abcb10 | coding | upstream | 108298 | 6743705 ~ 6752893 (+) |
| AMCG00001515 | LOC107580738 | coding | upstream | 119251 | 6736097 ~ 6741940 (+) |
| AMCG00001528 | NA | coding | downstream | 8380 | 6871764 ~ 6874095 (+) |
| AMCG00001529 | LOC107717858 | coding | downstream | 73963 | 6937347 ~ 6943146 (+) |
| AMCG00001531 | ppm1g,LOC107660231 | coding | downstream | 137057 | 7000441 ~ 7010715 (+) |
| AMCG00001532 | NA | coding | downstream | 148521 | 7011905 ~ 7015337 (+) |
| AMCG00001541 | NA | coding | downstream | 153545 | 7016929 ~ 7020818 (+) |
| G158435 | NA | non-coding | upstream | 72219 | 6787404 ~ 6788972 (+) |
| G158364 | NA | non-coding | upstream | 351561 | 6509294 ~ 6509630 (+) |
| G158342 | NA | non-coding | upstream | 438956 | 6422000 ~ 6422235 (+) |
| G158337 | NA | non-coding | upstream | 450634 | 6409021 ~ 6410557 (+) |
| G158332 | NA | non-coding | upstream | 463003 | 6396920 ~ 6398188 (+) |
| G158539 | NA | non-coding | downstream | 164803 | 7028187 ~ 7036066 (+) |
| G158548 | NA | non-coding | downstream | 192464 | 7055848 ~ 7056061 (+) |
| G158555 | NA | non-coding | downstream | 294866 | 7158250 ~ 7160609 (+) |
| G158571 | NA | non-coding | downstream | 306149 | 7169533 ~ 7169767 (+) |
| G158580 | NA | non-coding | downstream | 448760 | 7312144 ~ 7313758 (+) |
| AMCG00001509 | sf3b5 | other | upstream | 465231 | 6394103 ~ 6395960 (+) |
| AMCG00001493 | NA | other | upstream | 960193 | 5889836 ~ 5900998 (+) |
| AMCG00001489 | NA | other | upstream | 989761 | 5869975 ~ 5871430 (+) |
| AMCG00001486 | NA | other | upstream | 1227842 | 5593680 ~ 5633349 (+) |
| AMCG00001480 | NA | other | upstream | 1478127 | 5366005 ~ 5383064 (+) |
| G158478 | NA | other | downstream | 11384 | 6874768 ~ 6876578 (+) |
| G158537 | NA | other | downstream | 160004 | 7023388 ~ 7028141 (+) |
| AMCG00001550 | NA | other | downstream | 807930 | 7671314 ~ 7679783 (+) |
| G158672 | NA | other | downstream | 873131 | 7736515 ~ 7737890 (+) |
| G158676 | NA | other | downstream | 883297 | 7746681 ~ 7746980 (+) |
