AMCG00001529 (LOC107717858)


Basic Information

Item Value
gene id AMCG00001529
gene name LOC107717858
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 6937347 ~ 6943146 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001529
ATGGGACGCCGGTCGCTTTTATTGGCTTCCCTCCTGTGTGTCTTGATATGCCAGGGTTTTGGCTCTGGGGTGTTTGAGCTGAAGCTGCAGGAGTTTCTGAACAAGAAAGGGGTGATGGGGAACACGAACTGCTGCAAGGGAGGATCCAGCTCGGGGTTCATGCAGTGTGAATGTAAAACCTTTTTCCGCATCTGTCTGAAGCACTACCAGACCAACGTGTCCCCCGAGGCTCCGTGCACCTACGGCGGGGCGGTGACGCCGGTGCTCGGCTCCAACTCGTTCCAGGTCCCGGAGACGACTTCAGACAACACCTTCACCAATCCCATCAAATTCGCTTTCGGTTTCACCTGGCCTGGGACATTCTCCCTGATTATTGAAGCTCTGCATACCGATTCCCCAGACGATCTAGCAACAGATAACCCCGACCGTCTGATCAGTCGTCTGGCCACTCAGAGGCACCTCACCGTGGGGGAGGAATGGTCCCAGGACTTGCATACCGGGGGCAGGACGGAACTGAAATACTCCTACCGCTTCGTGTGTGATGAACACTACTACGGCGACGGCTGCTCCGTCTTCTGCCGGCCCAGGGACGACGCCTTCGGCCACTTCACCTGCGGAGAGCGGGGCGAGAAAGTGTGCAACTCGGGCTGGAAGGGACAGTACTGCTCCGATCCAATCTGTCTCCCTGGGTGTGACGAGCAGCATGGATTTTGCGACAAGCCCGGCGAGTGCAAGTGCCGAGTGGGATTCCGTGGGCGCTACTGCGACGACTGCATTCGCTACCCAGGCTGCCTCCACGGGACCTGCCAGCAGCCGTGGCAGTGCAATTGCCAGGAAGGCTGGGGTGGCCTTTTCTGTAACCAAGATCTTAACTACTGCACACACCACAAGCCCTGCGTGAATGGAGCCACTTGTACCAACACTGGCCAGGGAAGCTACACCTGCTCCTGCAAGCCAGGCTTCAGTGGGGCCAGCTGTGAGATTGAGGTCAACGAATGCGAAGACAGCCCATGCAGGAATGGAGGGAGCTGCACTGATATGGAGAACACCTATAGCTGCACCTGCCCTCCAGGCTTCTACGGGAATAACTGCGAGCTTAGTGCGATGACCTGCGCTGACGGGCCCTGCTTCAATGGCGGGAGGTGTGCCGACAACCCTGACGGCGGGTACTACTGCCAGTGTCCAGGCGGCTATGCGGGCTTCAACTGCGAGAAGAAAATCGATCACTGCAGTTCCAATCCATGTGCGAATGGTGCTCAGTGTCAAGACCTGGGGAACTCCTACCTGTGCCAGTGCCCGGAAGGGTTCACCGGAAAGCACTGCGACGACAACATCGACGAGTGCGCCAACTTCCCCTGCATGAACGGGGGCACGTGCCAGGACGGCGTGAACGACTACACCTGCACCTGCCCTCCGGGGTACATCGGCAAGAACTGCAGCGCCCCCGTCAGCAAGTGCGAGCACAACCCCTGCCACAACGGCGCCACCTGCCACGAGAGGAGCAAACGCTACGTGTGCGCCTGTGCGCAGGGATACGGCGGCCTCAACTGCCAGTTCTTGTTGCCGGAGCAACCTAAGGGACAGCCGGTTATTGAGGATGCCAACAACAACAGGTACACCGACAGCGAGGAGGCCGACTTTCCCTGGACCGCCGTGTATTCTGGGATTATCCTGGTCCTCATGCTGTtgctgggctgtgctgtgctggtggtCTGCATCCGGGTCAAAGTTCAAAAGAGGGGCCAGCAGCCAGACACGAATCACAGCGAGAGCGAGACCATGAACAATCTGACCAACTGCCAGCGGGAGAAGGACATCTCGGTCAGTGTCATCGGGGCCacccagatcaagaacaccaaCAAGAAGGTCGACTTCCACTGCGAGAACAGCAGCGAGAAGAACGGCTTCAAAGTGCGCTACCCATCAGTGGATTACAATCTGGTGCACGAGTTGAAGCACGAGGAGTTAGGGAAGGAGGAGCAGGACAGGAGTGAGGCCAAGTGCGAAGGTCTAGACTGTGAAttagaggagaaaaacaaagtacaCTTAAAGAGTGACTCGTCAGAAAGAAAACGTCCCGAGTCTGTATACTCCCTGTCGAAAGACACAAAGTATCAGTCGGTGTATGTCATATCAGAAGAGAAAGATGAATGTATAATCGCAACTGAGGTGTAGCGTGCCACAATGAAGCTGTTGCTCTTCTTGCTCTAAGGAGGTTTTACTCCGTCGAATGCTGCTCAAACCAGAGGGAAGGTTTCCTTCAAGTGACTGCTGCTGTGGGacttaaatgttaaaactgATATTCAGAATGAGCTGGTTCTCTCCTGAAGTAAGCACAGTGACTGCAGAAAACAGTGGATGTTGGGCCATAGTGGTCTGCTTTCTCAAGATTGTTTCCCAGGAACATGCTGAATGATGTCTGTTGCACTGCCGCTGAGGACATTTACCTCGTTGCACTATGGACAGTTGCttttttaagttgtatttaACACAAACTGACTTGATCACTGTGTAAAAAGTCTGCACTGACCGCagtgtacattttcaaagtcCTCTGAGCCAACCTGTGTTTTTGGTTTGGAGATGAAAACACTGCCTTCAAaaagtctttttttcccccctaaatACTGTCAAgatgttgcttttttaaattgtatttttttaatttaattttattgtttgcgtgtttgtttgtgaatttatgtattttgtggaGTTCATTTTTgataatttaaattttttttttctgcaaatatGTACAAAGGCACTTCGGGTCAACGTGACTATtatttcgtttttgttttttctacataaatgtatttaagaagTATTGTTCAGAAtgttatttgaattgttt

Function

NR:

description
PREDICTED: delta-like protein D

GO:

id name namespace
GO:0021523 somatic motor neuron differentiation biological_process
GO:0007219 Notch signaling pathway biological_process
GO:0001756 somitogenesis biological_process
GO:0003140 determination of left/right asymmetry in lateral mesoderm biological_process
GO:0046331 lateral inhibition biological_process
GO:0048546 digestive tract morphogenesis biological_process
GO:0060218 hematopoietic stem cell differentiation biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0030165 PDZ domain binding molecular_function

KEGG:

id description
K06051 DLL; delta

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001529 True 2857 mRNA 0.52 11 6937347 6943146

Neighbor

gene id symbol gene type direction distance location
AMCG00001528 NA coding upstream 63252 6871764 ~ 6874095 (+)
AMCG00001522 NA coding upstream 73963 6861191 ~ 6863384 (+)
AMCG00001516 NA coding upstream 150327 6779662 ~ 6787020 (+)
AMCG00001519 actc1a,act2,zgc:86709,LOC105024319,LOC100534413 coding upstream 160661 6772496 ~ 6776686 (+)
AMCG00001518 NA coding upstream 166447 6753731 ~ 6770900 (+)
AMCG00001531 ppm1g,LOC107660231 coding downstream 57295 7000441 ~ 7010715 (+)
AMCG00001532 NA coding downstream 68759 7011905 ~ 7015337 (+)
AMCG00001541 NA coding downstream 73783 7016929 ~ 7020818 (+)
AMCG00001542 adss,LOC107666526,LOC107375820,LOC107733748 coding downstream 169506 7112652 ~ 7133015 (+)
AMCG00001536 NA coding downstream 327272 7270418 ~ 7296604 (+)
G158435 NA non-coding upstream 148375 6787404 ~ 6788972 (+)
G158364 NA non-coding upstream 427717 6509294 ~ 6509630 (+)
G158342 NA non-coding upstream 515112 6422000 ~ 6422235 (+)
G158337 NA non-coding upstream 526790 6409021 ~ 6410557 (+)
G158332 NA non-coding upstream 539159 6396920 ~ 6398188 (+)
G158539 NA non-coding downstream 85041 7028187 ~ 7036066 (+)
G158548 NA non-coding downstream 112702 7055848 ~ 7056061 (+)
G158555 NA non-coding downstream 215104 7158250 ~ 7160609 (+)
G158571 NA non-coding downstream 226387 7169533 ~ 7169767 (+)
G158580 NA non-coding downstream 368998 7312144 ~ 7313758 (+)
G158478 NA other upstream 60769 6874768 ~ 6876578 (+)
AMCG00001509 sf3b5 other upstream 541387 6394103 ~ 6395960 (+)
AMCG00001493 NA other upstream 1036349 5889836 ~ 5900998 (+)
AMCG00001489 NA other upstream 1065917 5869975 ~ 5871430 (+)
AMCG00001486 NA other upstream 1303998 5593680 ~ 5633349 (+)
G158537 NA other downstream 80242 7023388 ~ 7028141 (+)
AMCG00001550 NA other downstream 728168 7671314 ~ 7679783 (+)
G158672 NA other downstream 793369 7736515 ~ 7737890 (+)
G158676 NA other downstream 803535 7746681 ~ 7746980 (+)
G158725 kat14,LOC106584902 other downstream 990010 7933156 ~ 7933555 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006410 dld coding NC_007124.7 CM002897.2 6075572 ~ 6081803 (-)
grasscarp (Ctenopharyngodon idella) CI01000005_02761667_02765877 DLL1, DLD coding CI01000005 null 2761272 ~ 2766340 (-)