AMCG00001539


Basic Information

Item Value
gene id AMCG00001539
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 7392073 ~ 7410053 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001539
ATGAGCTTAACGTCCTGGTTCCTGGTGAGCAGTGGGGGCACCCGGCACCGACTGCCAAGGGAGATGATCTTTGTGGGCCGAGACGACTGCGAATTGATGTTGCAGTCGCGAAGTGTCGACAAGCAGCACGCCGTCATCAACTATGAGGCGGCCACAGATGAGCACAAAGTGAAAGACCTCGGGAGTCTCAATGGGacCTTTGTTAACGACATCAGAATCCAGGAGCAGATGTACATCACGCTGAAGATGGATGACAAGCTGAGAGGAGAGCTGCACGTTCCAGAGGAAGCTTTGAAGCATGAAAAGTTTACAAGCCAGCTCCAGCTGACCAAGAAGCCTTCAGAAGGGGAGACCTCCAAGGTGCCGCCTACTAAAGTGGTCGAACCCAAGGCTGCTGAGGCATGTTGCGAGGGCTCCCCCAAACTGGCCGACCCCTACAAACTGGATGACAAGCTGGCAGGAGACATTGCTGCAATGCACCGGGGCACTCCGCTATATGGGCAGCCATCTTGGTGGGGGGACGGAGACGCTGACGATGAAAACTCTTTCAAACAGGAAACCAAAACGGCCAGCAAGAAGCAGGAGAGCTCTTTGTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001539 True 597 mRNA 0.55 6 7392073 7410053

Neighbor

gene id symbol gene type direction distance location
AMCG00001535 akt3,LOC107747540,LOC105912451,LOC107666430,LOC107698756 coding upstream 86752 7300190 ~ 7305321 (+)
AMCG00001536 NA coding upstream 95469 7270418 ~ 7296604 (+)
AMCG00001542 adss,LOC107666526,LOC107375820,LOC107733748 coding upstream 259058 7112652 ~ 7133015 (+)
AMCG00001541 NA coding upstream 371255 7016929 ~ 7020818 (+)
AMCG00001532 NA coding upstream 376736 7011905 ~ 7015337 (+)
AMCG00001540 NA coding downstream 11757 7421810 ~ 7452801 (+)
AMCG00001548 NA coding downstream 120893 7530946 ~ 7549993 (+)
AMCG00001559 LOC105902337 coding downstream 276331 7686384 ~ 7688398 (+)
AMCG00001558 gtpbp2,LOC108263131,LOC107751133,LOC102796526 coding downstream 286235 7696288 ~ 7710825 (+)
AMCG00001560 NA coding downstream 308741 7718794 ~ 7720111 (+)
G158580 NA non-coding upstream 78315 7312144 ~ 7313758 (+)
G158571 NA non-coding upstream 222306 7169533 ~ 7169767 (+)
G158555 NA non-coding upstream 231464 7158250 ~ 7160609 (+)
G158548 NA non-coding upstream 336012 7055848 ~ 7056061 (+)
G158539 NA non-coding upstream 356007 7028187 ~ 7036066 (+)
G158621 NA non-coding downstream 164861 7574914 ~ 7575132 (+)
G158631 NA non-coding downstream 251531 7661584 ~ 7664572 (+)
G158667 NA non-coding downstream 317497 7727550 ~ 7728815 (+)
G158668 NA non-coding downstream 319500 7729553 ~ 7731701 (+)
G158671 NA non-coding downstream 325223 7735276 ~ 7735610 (+)
G158537 NA other upstream 363932 7023388 ~ 7028141 (+)
G158478 NA other upstream 515495 6874768 ~ 6876578 (+)
AMCG00001509 sf3b5 other upstream 996113 6394103 ~ 6395960 (+)
AMCG00001493 NA other upstream 1491075 5889836 ~ 5900998 (+)
AMCG00001489 NA other upstream 1520643 5869975 ~ 5871430 (+)
AMCG00001550 NA other downstream 261261 7671314 ~ 7679783 (+)
G158672 NA other downstream 326462 7736515 ~ 7737890 (+)
G158676 NA other downstream 336628 7746681 ~ 7746980 (+)
G158725 kat14,LOC106584902 other downstream 523103 7933156 ~ 7933555 (+)
G158836 NA other downstream 749093 8159146 ~ 8161815 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006478 cep170aa coding NC_007124.7 CM002897.2 10980755 ~ 11072964 (-)