AMCG00001540


Basic Information

Item Value
gene id AMCG00001540
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 7421810 ~ 7452801 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001540
ATGATACAGAATGAATTTGTGGTCTCATTGTATGGGTTGCGCTCTCTCTGGGACATTTCAGACAGCAAAGAGCCCAAGAAAGCTGAGGAGCCGTGTGGGAAGGAGGAGGGCCTGTACTCTCTCTGCCGGGAGCCCAGCTACTTCGAGATCCCCACCAAGGAGGCCCAGCTGACGGCCCAGATGGGCGAGAGCGGCATCCACGAGATCCCCACCAAGGACACCGAGGGGGCCACTGCCTCCACCGCCGCTGCATCGGCCGCCGCCACGGCCGCCGCCCAGGGCCACGCGTCCTTCACCATCGAGTTCGACGACGCCGCGCCCGGGAAGGTCACTATCAAGGACCACGTCACCAAATTCACCCCCGATCACCGGCCTCGGCCCAAGAAGTCCCCGCAGCAGGGGGGTAAGGAGCTGAGTACCCTGCAGGCCGCCATGATCGCTGCTGAGAGCAAGGTGGCCGACTGGTTGGCCCAGAACGACCCCCCAATGGCCAGGAGGGAGTCTACCGAGGAGGACAGCAAGAGCATCAAGAGCGACGTGCCGGTCCACCTCAAGAGGTTGAAAGGAAGCAAACACGAGGACGGCACCCAGAGCGACTCTGAAAATGGCGCTGGGCACCGGTTCACCAGCAGGCGGGTGGCGCTGGAGGAGCGATTGAGGATAGCTCAGCACGGCAGGTGCCCAGGCGGGGTGGGTGCCGAGGGCAGGGCCGTGGAGGGGTCCTTCCTAAGCAGGACAGCCTTCATGATCGAGTTTTTCGACGAGGACAACCCCCGTAAGCAGCGCTCCTACTCCTTCACTCAGGCCCCCGGCATGCCAGGGGAGGGACCCTGCCCAACTCCTACCCCCCCCAGGCCCAAAGGCAGCGTGCCCACTGATTGCAAAGGGGCGCCCTCCCCGTTGGCTGTTCCCACGCCCGCCCGACTGCTCGTACACCAGAAATCGGACGACTCCTCAGTCGTCCGGAGCTCCGCAAGCGTGGGCCAGCAGACCAGCCCCACGGAGATGGACAAGGCCACCGGGACAGGGGACAAGGACAATGAGGACGACCACAGCGATAAGGGCACCTACACTATCGAGATGGAGAACCCCAACCCAGAGGAGGCAGAGGCTCGACGAATGATTGATAAGGTGTTCGGTGTCGAAGAGAGTCCGGACCATTCCAGGCCCGTGGTTCccgagcagcagcaggagggtCTGAAAGAGTGGCAGACCACCGGTTCTGGAGAGCAGAGGAAACCTGGTTTCATTGACTCCGAGattCTTCCAGAAGACACGGTTGCCGTGGGGAGCCCACGTTGGGTGTCTCAGTGGGCCAGCTTAGCTGCCAATCACACAGGAACAGAGCAGGATGACATGAGGAGCGAGTCTCCAGCCTTTCTTGTGCATGAGAAAGAAGCTGATGTCAGTGAGTCGGGGATTTCGATGAAAAGCGCTGCCTCGGCCACCTCCGCTTCGAGCCATGGTGAGCGGAAGCGCAGGACTCTGCCCCAGCTTCCCACAGAGGACAAAGCCCTGGACAGCCAGAGGGCCAAACCTGTCAAGACCTCCACTGGACTGGGCCTGAGGTCAGAGATTGGGGAGAAACAGGATACGGAGCCCCAGGAGAAGGAGAGCCAGTCATCTACTAAGGGAAGGGAGAGCGATAGGGCCAGCAGGGCCGCCCATAAGGCAGCCAACGCAACGCAGGCGGCTACAGAGATCGAGAGAGCTGACTTGGGCACGTCGGCTGTCAAGCAGGCTTTGGCCAAAATCcagcagcaggagcagaggAGCAGCCAGCAGCCATGGGCACCTTCCAAATCCGTTTCCAAACCCCTGGGCAGCACTGAGAAGAAGCTTCAGAAGCGCGATGGGGAGCGCAGGGAGGAGGACAAGAGGAGGAGGCCCGACGACAGCCCCCGGAGTCAGTCGGGCCGAGGTGGAGACAGCGAAAAGTCCGGCAAGCCCCTGGTTAGGCAAGGAAGCTTCACCATCGAGAAGCCCAGCGCGAACGTTCCCCAAGAGCTCATCCCCCGGATCAACAAGCAGATGGGCTCATCTCCCCTGGCCCGGGAGAGGAGTGACTCGGTGGGCAGCGTGGACACCACCCTGCTGCTGAAGGACACCGAGGCTGTCATGGCCTTCCTGGAGGCCAAACTGCGGGAGGAGAATAAGTTGGATGGAGGCGGCGGCGCAGACCCCCCGAGCTACCCTCTAGAAGATTCCATCTCCCCCGAGTCGGACGTGGACACAGCCAGCACCATCAGCCTGGTGACCGGAGAGGTCGACCGCAAGTCAGCCCAGAAGCGGCGCACGCTGAGCAGCCTCCACAAGGAGAAGAGCACCGTCAGCTCCGCTGCCAAGAGTGCCGCCAGCGCCCGCGAGCGCCTGGAGAAGAAGACCAAGCCACGCCCCTCCGAGGGCCGGCCGGACAGCCGCCGATCTGCCCATGCCAGCTCCCGGGTCAGGCAGCCCTCCCTCGACCTGACCGATGACGACCAGACATCCAGCTTACCACACTCCACCATTTCAGATGTCTTTTCCTCCGACCAAGAGACCTACTCTGGGCGCTCGCACGGCCGGGGGCAGTTCACCTCCACCGATGAACTCTTACATTCCAAACTGGAAGCCAGCAAAGCGGGCAAAACCAAGACTCCCCAGCCCCCAAGCCAAATTGCTGGCAAACCGGCCACCCTGCCCCGGCCCCGGCCCACCAGGGCTTCTCTCCTGCGTCGGGCTCGGCTGGGGGAGACCTCGGACAACGACTTGGCCGATGCCGATAAGGTCTCTGTGGCCTCTGAGGTGTCTACCACTAGCTCCACCTCCAAGCCTCCCTCTGGGCGGAAGACGCCATCCCGGATAGACATGCTGGCTCAGCCACGCAGGACGCGTCTCGGCTCTCTGTCGGCCAGGAGCGACTCGGAGGCCCCCATGAGCCGGAGCAGTACCAGCTCCCGCGCACCGGACTCCATGCTACGCCTGGGCCTGAGGACGGCCTCTACCGCGGATGCCAAGGTGATGCCCAGGATGAGGGCAAACAGTGTCTCCAAACTGCCCGACACCAAGGCCAAAATCTCCTCGGTTCACAGCTCTCCTTCAGCCAACGCCAGGTGGAGACGCCTCCCTCCCGAGTACGCGTCCACGTCAGAGGATGAGTTCGGGTCCAACCGCAACTCTCCCAAACACGCCCGCCTCCGCGCCGCCACCGCCCTGCGCGGCACCCGGCTCCAGAGCAGCGTCACGCCCGCCCCTGGGGGGGTGGTCCTCAAGCACAGGATGAGAGAGCAGGAGGAATACATCCGAGACTGGACCGCCCACAGCGAGGAGATTGCCAGGATCAGCCAAGACCTGGCCAAGGACCTGGCCATCCTGGCCCGGGAGATCCACGACGTGGCAGGAGAGATTGACTCGGTCAGCTCCTCGGGCACCGCGCCCAGCACCACAGTAAGCACTGCAGCGACCACCCCAGGGTCCGCCATTGACACCAGGGAAGAGCTGGTGGACCGTGTGTTCGACGAGAGCCTGAACTTCCGGAAGATTCCCCCGGTGGTGCAGAACAAGGCGCCGGAGATCAACGGCCGGCCTGTGGAGCTGCGGCCGCGCTCCTCGGACGCCCCCGACCCCCAGGCTGCTATTCGGAGGAGGACGTGGAACCGAGACGAAGCGGTCTTGGACAGTCTGCTGCTGACATCTGTTGCTCAGCTCTCGTCGAAAATTAGGCAATCTGTGGACAAAACAGCGGGCAAAATCAGGATACTATTTAAGGACAAGGACAGGAACTGGGATGAAATCGAGAATAAATTGCGAGCGGAGAGTGATATGCCACTGCTTAAAACTTCAAATAAGGAGATTTCATCAATCCTGCAGGAGCTGAAGAGAGTGGAGAAGCAGCTTCAAGTTATCAACGTGATGGTGGACCCGGACGGCACTCTGGACGCTCTGAGCAGTTTGGGATTGACCAGCCCCATCCTCCCCAAACAGAGATCCAGCCCCAGCTCCCAGGGCCCGCGGTCAGTGGCGTCCAGCCAGGGCGGGGCGAGAGCCTCCTCGGAGCAGGACAGCATGCCGTCCGAGCGCGACTTCAGCCTCCACTTCAAGCGCTTCAACGCCGGACGTGAGGAGGAGAGCTCCCTCACGCAGGAGTGACACGAACACCACCACTCCTAGAGACAACATACATGGAATGCTGTTACACTATGAccttatgtgtgtatatgtaaatacCCTTTACCGTGTTTAGGCCCCTGACGAGAGACCACTTCCGTCTCCAGTCGCATTCGCACAACTGCTCCCACGAAGGCCAAGGGAGGGTTTTTGTTACCAGGAAAGAAGCAAAATCCCTGCCCCCCCGCCTCTCGCCTCATTCAGATGTACAGGGAACGTGCAAGCAGGACCATACGAGATCCGTGTTCTTCTAcagcaaatggaaaacaaacggGGGGAAACTAAAATCAGACTTGTCCCTGTTTGCACACTGCCAGACCCTCACATCTAGGATTCCTGCAGCCCCTCAGATCAGACTCTCCCAGCATTATCGTTCCACACCTCTAGTGTGGCGCCCCCTGCAGGAAGTCCGGTGAAGCGGATTCCCAGTTAAACGACGGACGTTTTATTTGGATTCGCCTCGTTCTGAGCATCGACGCAAAGCACAGGCAGTCTCTCCTCTCTAAAGGAACTCTCACAATAGAGACACAACTGTGGAGAGTTCCAGATGACAACAGAAAGGTGCAACATGTGGACAAAATCTTGGTAGaacttattttccttttgttacaTATGGATGGGTGGAAGGAACAGTGACTGGAGGAGATTGCGAGGTTGGGAACGCACCTGTGCTTGAAACCTCTTGGTGTGATGACACGTCCACCGGAAAAAACCTCCTTGCCTTGGAAAGCAAAGACAGATACCTTTATCCTCTGGTGAAACGGACGTCCCCTGAATTTGATCTAACCCGCCATTTATGAGTATCAGTCTGCTCATATGTAGAAACCTAGCATTACGCAAAGCCATTAGTGCATAGCTTCCCAATTCTCATTAGTTTTTCACTGACGATTGCAAAACAGCCATCTAAATGTACCTACCAGCTACCCCGTCTCAGATAATCTGACTTTTggatttgatcccatggagatcagccaatgaatatataaattaatatcttTTGGAGTACAGGGTTATTCACTGTCAGTGCAAGTAGTACGAAAACGTAGTACGAAAACATTACAGTTGTAGCAGTTgagaataagaaaatgtaactgttttttctataacaaaatcaaattacaaaCATCTTACACAACTGGTTTTACAGCTTTGTCCGTTGCTCTTACAGTGTCCATAGCGACTCAAGTTTCAGCGGCTGCGTAATGCGCCCAATCCGGCGGTTACAAGTGTATCACGTGTGTTTGAAACTACTTTGTTTTTTACGAGAaaaaacatcaccttttcttcgTTCCATGGAAGTGCATTATGCTGTGGTGAAACAACATGTTGACTGGTAGTTCAACTCATGCAAGTTTTACCTTTTTGGGGTGCtcgggaaaataataaattaaaaatataaaagtaatacaataaaagacagaaaacattatttgtGAATCCATATTGTAAACTGAACCgattttcaatatgttttaaaccATTTGGGGTATCCTGACTGCctgattaaagaaaatatttgtgcATATATAAACGAACAAGAAAACGATCTAAAGTGACATTCTGTATCATTAcgtttcatttttcttttctcatgtTAACTACTATTTTTGTGAACTGGAAATAACAGAGATAAATGCAGTATGTATGTTTACTTTTCATTAGGACGGAGTTATCAGTATTTTAGACAGGAGCCTGGCACAACCCGAGTTATTTTTGCACTGAGAAGACATTCGAGGCTCTGCTATAGCAACTGTAGTATAAAACTCAGCTTGGTCTGTTTTGAGTTTCTCGTTTACATGTAAATGCAGATTCGGTGCAGGAGTGGACCGGGTGTGGGGCTGAGGGGGCGTGGCCTTGAAGCTGACAAAAGtgactttttgttttcccaCTCTGTGGAAACGACGGCAACCTTTTCAAAGATTTCAAATCAATGTGAAACTCGGTATGTAGCTCAGCATCCAAAAACGCATAACCGGGGATGTCTTCTTTCTAAATGAAATTTGCTGCCGCCATTGTTTAGTAAAAAAGCCCAACTGTACAATTTCGATATAGGCCTGTAGCAACCCCAATTAATAGTTCTTGCTTTGTTTAgttgttaaaatacaattatttcccATTTGCTGGAGTCTTTCTTATATACAAAGATTTCCTCTTCAGAGAATTTGCTGCTTTCTTTAGCTATCTGAAGGTTTCCAGAACCTTTTTTCCCCCAGGCCTCTCCTTGTGTATCCTTGTGCAGTAGATAAGACAGCCACGATAGCTCTCCTTTACTTAGAGATTGAAGCAATAGTGAAAATAAGTACcaggaataaaataaagtgctgtttctttttgtttgatatACAAGTGTATGATGTCACTAAGTGCCCGGTATTAAAACAGGAGTGAAACAAAACGAAttgaaaaccacacaaaacagTAACTTAGAGGCATCTTTGAGACGCGGGCTGAACATCTTTGATTTTGCACATCCCAAACTGATGGTGAGACTTCGGAAGACAGGAACAGAGAGTACAGCGAACAACACGACCAAAACTGACGATTTTCCACTCTTCTGTGTCCAGGTTTCGGTGTTAGGCCTCATTGTGTACCAGTGTTCTCCATACAGGAATGTAGCCAGATTGGGAAACCTCGATGTTAATCAGCATTCTGCAAAAccgaaagaaaacaaaaaaaaaaatctaagtgCTCggtacacttttttttgttgttgtttgtgaagTTGTTTACACATGTTTTCttatcagtgttttatttttatttttgggggggtttgttttgtattgtatgaacactatcttatttatttttattttccatgcattacattattttgttatatttcatgtatttgcattattttgttatttgcatcTACTActcattttcaataaaatacatttgaaaaaaagcTGCTGACTTTCGTTTTGGAATATATGTTCTGTCTTTTTTACCCTGGTAAAGGCTGGTCCACTACCACCCCTAGTtggcatttatttgtatataaataagtgACAATAGTGTTCTTATGCTGGTCAATCAAAG

Function

GO: NA

KEGG:

id description
K16463 CEP170; centrosomal protein CEP170

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001540 True 7191 mRNA 0.53 12 7421810 7452801

Neighbor

gene id symbol gene type direction distance location
AMCG00001539 NA coding upstream 11757 7392073 ~ 7410053 (+)
AMCG00001535 akt3,LOC107747540,LOC105912451,LOC107666430,LOC107698756 coding upstream 116489 7300190 ~ 7305321 (+)
AMCG00001536 NA coding upstream 125206 7270418 ~ 7296604 (+)
AMCG00001542 adss,LOC107666526,LOC107375820,LOC107733748 coding upstream 288795 7112652 ~ 7133015 (+)
AMCG00001541 NA coding upstream 400992 7016929 ~ 7020818 (+)
AMCG00001548 NA coding downstream 78145 7530946 ~ 7549993 (+)
AMCG00001559 LOC105902337 coding downstream 233583 7686384 ~ 7688398 (+)
AMCG00001558 gtpbp2,LOC108263131,LOC107751133,LOC102796526 coding downstream 243487 7696288 ~ 7710825 (+)
AMCG00001560 NA coding downstream 265993 7718794 ~ 7720111 (+)
AMCG00001556 LOC104967701 coding downstream 322041 7774842 ~ 7792880 (+)
G158580 NA non-coding upstream 108052 7312144 ~ 7313758 (+)
G158571 NA non-coding upstream 252043 7169533 ~ 7169767 (+)
G158555 NA non-coding upstream 261201 7158250 ~ 7160609 (+)
G158548 NA non-coding upstream 365749 7055848 ~ 7056061 (+)
G158539 NA non-coding upstream 385744 7028187 ~ 7036066 (+)
G158621 NA non-coding downstream 122113 7574914 ~ 7575132 (+)
G158631 NA non-coding downstream 208783 7661584 ~ 7664572 (+)
G158667 NA non-coding downstream 274749 7727550 ~ 7728815 (+)
G158668 NA non-coding downstream 276752 7729553 ~ 7731701 (+)
G158671 NA non-coding downstream 282475 7735276 ~ 7735610 (+)
G158537 NA other upstream 393669 7023388 ~ 7028141 (+)
G158478 NA other upstream 545232 6874768 ~ 6876578 (+)
AMCG00001509 sf3b5 other upstream 1025850 6394103 ~ 6395960 (+)
AMCG00001493 NA other upstream 1520812 5889836 ~ 5900998 (+)
AMCG00001489 NA other upstream 1550380 5869975 ~ 5871430 (+)
AMCG00001550 NA other downstream 218513 7671314 ~ 7679783 (+)
G158672 NA other downstream 283714 7736515 ~ 7737890 (+)
G158676 NA other downstream 293880 7746681 ~ 7746980 (+)
G158725 kat14,LOC106584902 other downstream 480355 7933156 ~ 7933555 (+)
G158836 NA other downstream 706345 8159146 ~ 8161815 (+)

Expression


Co-expression Network