AMCG00001541


Basic Information

Item Value
gene id AMCG00001541
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 7016929 ~ 7020818 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001541
TGTCGGTCCGCCATTGGCCCTTTCAACGCTTTAAAGTATCCGCTGCGCTGTGATTGGCCGCTGTCTTTTGGATACGGAATTCAAACAGGTTTCTGCCTGGCGCTTTTTATGTTGCCCTCAGAGGCTGTAAGTCAGATTCACACAGCGCTGCAGCTTCAAGGCGAACCAAAGGAAGCTGGAAGCTCACATCACGTTTTTATAAATAAGGAAGCATAAGGAAAAATCCGTTTTACTGACTTGAGAAGGCTGGAAAGCACAAGATGAAGTGTCCATTTAACCCCCAGCAGAAGCTCTCTGCTGCTTTTAAAGGTGACAAGGGTGATGGAGACTACAGCAAAGCCAGCTCTTATGAGAGGAAATCTCCCCTGAAGAACGAAGCCAATATTTCTTTTGAATGCCTAGCTTCCCCAGAGCTGACACCCCCGGCTGTGGAGCAACGGGAAGACAATTTTGGCAGCGTCCATAACAAAGAGAACCAAAAAGACTTCTTTGCCTCCAGGCTTTTagacagtgtggagtatgggaATGACTCCATTTTGAGTACCGGAGCTCTTCAAGAGGACAGCGGCTATCTGTCTCTTTACAACAGCCAGATCGATCAAGAGGAACACGGCTCGGGGACAGCGGACGATGAGGGGAAGCCTGTGCCACCGTCCGAGATGCCGTGTGATGCCAGTCCTTCTGAGTTGCGGCTCCCCCTGCTGCAGTTTGAGCACACTGTCTGCAAGGAGCTGAGGAAAAGCTACAGCAGGACCCAGAAGTTTGACTGGACGGTGGTTGGGAAGATCGCAGAGGATTTCGGGCTCCAGAACGTGGTGGGTAGGAAGATGGGCCTCGAACACGTGGATCTCCTCCAAGAGCTAATGGAGAGGAACATGAGGCACATTCTGACCAGGATCCTCCGCTTTCTCGGAGATGTGGATTTGATCAACTGTCAGAAAGTTAGTAAAACCTGGCGAAGAGTCATCTGTGAGGATAAGTGGGCGGTCCAGATGTGTACAGCTGCTGAAGAGAGGCTCCAGGCTGCAAGACCCACAGAGGTACATGCCACACGGGATTTTGCCCTTTCTAGAGTCGTATTGTCCTGCATCCAAGGCCTGGCTTCCACCCCTGTACCAAAGCCATCGAAGCGATCTTCCCCGAAGGAATGCAAACCGAGCAGGTCCTGGAGGAGTCGGCACAAAGACTTCCAGGAGGCCGCCAATGTGTTAAAACAGCACGAAGCCCTGAGACATTGCACACACTGTGGGTCCCCTGCCAAATACGATTCCTACCTCGAAAGGGCCACCTGTACCCGGGTCAGCTGCAGCTTTGACTTCTGCACCAGGTGTTTGTGTGAATACCACAGCAATGCCACGTGCACCACTGGCCACAAAGGACAAGGCTCTCAAACTGGACTTCTGGCAGGCAGCAGCCGGAGCAAGAAAAACTTGAAAAGACTCTGAACCCTATCTTGTgtttgtattagtatttttatttgaaagactgaaatctcaattttaaaaaactatatatttataccattgcattttattgtagaCTCCACATCCCCACTGAATAAACTGAAtgggtttattttaaagtcCAATATCATGGCATACTCCCAATCCAAGTGTACTGCCTGTGTGGAAAGatgctgtgtttaaaaatgtgaagaagAGTATTGGAATTTTATACCGAAGGAGagagaagtaaaaaaatattttactgttttagaTTTAGAAAGAGAATTGAGTCCATTTCCTGAAGTTCCAGGGGTTTTGAAGATTTGTGgtactttgtttaaaatgtaaatataaaactaaatgtaaatatttattcagatgtatttattttttcttgttgtaaGTCAataaacctttctttttttaaagaacaga

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0045839 negative regulation of mitotic nuclear division biological_process
GO:0016567 protein ubiquitination biological_process
GO:0051276 chromosome organization biological_process
GO:0000281 mitotic cytokinesis biological_process
GO:0044424 obsolete intracellular part cellular_component

KEGG:

id description
K10292 FBXO5, EMI1; F-box protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001541 True 1880 mRNA 0.46 5 7016929 7020818

Neighbor

gene id symbol gene type direction distance location
AMCG00001532 NA coding upstream 1592 7011905 ~ 7015337 (+)
AMCG00001531 ppm1g,LOC107660231 coding upstream 6214 7000441 ~ 7010715 (+)
AMCG00001529 LOC107717858 coding upstream 73783 6937347 ~ 6943146 (+)
AMCG00001528 NA coding upstream 142834 6871764 ~ 6874095 (+)
AMCG00001522 NA coding upstream 153545 6861191 ~ 6863384 (+)
AMCG00001542 adss,LOC107666526,LOC107375820,LOC107733748 coding downstream 91834 7112652 ~ 7133015 (+)
AMCG00001536 NA coding downstream 249600 7270418 ~ 7296604 (+)
AMCG00001535 akt3,LOC107747540,LOC105912451,LOC107666430,LOC107698756 coding downstream 279372 7300190 ~ 7305321 (+)
AMCG00001539 NA coding downstream 371255 7392073 ~ 7410053 (+)
AMCG00001540 NA coding downstream 400992 7421810 ~ 7452801 (+)
G158435 NA non-coding upstream 227957 6787404 ~ 6788972 (+)
G158364 NA non-coding upstream 507299 6509294 ~ 6509630 (+)
G158342 NA non-coding upstream 594694 6422000 ~ 6422235 (+)
G158337 NA non-coding upstream 606372 6409021 ~ 6410557 (+)
G158332 NA non-coding upstream 618741 6396920 ~ 6398188 (+)
G158539 NA non-coding downstream 7369 7028187 ~ 7036066 (+)
G158548 NA non-coding downstream 35030 7055848 ~ 7056061 (+)
G158555 NA non-coding downstream 137432 7158250 ~ 7160609 (+)
G158571 NA non-coding downstream 148715 7169533 ~ 7169767 (+)
G158580 NA non-coding downstream 291326 7312144 ~ 7313758 (+)
G158478 NA other upstream 140351 6874768 ~ 6876578 (+)
AMCG00001509 sf3b5 other upstream 620969 6394103 ~ 6395960 (+)
AMCG00001493 NA other upstream 1115931 5889836 ~ 5900998 (+)
AMCG00001489 NA other upstream 1145499 5869975 ~ 5871430 (+)
AMCG00001486 NA other upstream 1383580 5593680 ~ 5633349 (+)
G158537 NA other downstream 2570 7023388 ~ 7028141 (+)
AMCG00001550 NA other downstream 650496 7671314 ~ 7679783 (+)
G158672 NA other downstream 715697 7736515 ~ 7737890 (+)
G158676 NA other downstream 725863 7746681 ~ 7746980 (+)
G158725 kat14,LOC106584902 other downstream 912338 7933156 ~ 7933555 (+)

Expression


Co-expression Network