AMCG00001542 (adss,LOC107666526,LOC107375820,LOC107733748)


Basic Information

Item Value
gene id AMCG00001542
gene name adss,LOC107666526,LOC107375820,LOC107733748
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 7112652 ~ 7133015 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001542
ATGTCGGAGGGAAGGATCGTGGCAGCGGCGGGCGCACACAATGGAGCCCATACCGGCGAGGAGCACCGCATCGTCCAGCGGAGTGTGGGCAACAAAGTGACGGTGGTGCTCGGGGCGCAGTGGGGCGACGAGGGCAAGGGGAAGGTGGTGGATCTGCTGGCCCAGGATGCCGACATCGTCTGCAGATGTCAGGGAGGGAACAACGCCGGACACACGGTGGTGGTGGATTCGGTGGAATATGACTTCCACCTCCTCCCCAGCGGCATCATCAACCCCAATGTCACAGCCTTCATTGgcaaCGGAGTGGTGATTCACTTGCCTGGTCTGTTTGAAGAGGCTGAAAAAAATTTGCGGAAGGGAAAAGgACTGGAGGGCTGGGAGAAGAGGCTAATCATTTCAGACAGAGCTCATATTGTATTTGATTTCCACCAAGCAGTCGATGGTGTTCAGGAGCAACTGAGACAGCAGCAAGCAGGGAAGAActtGGGAACAACGAAAAAGGGCATTGGCCCGGTCTACTCGGCGAAAGCGGCCCGCAGTGGGCTCAGGATATGTGACCTCCTGTCCGACTTTCAGGACTTCTCCGAGAGGTATAAAGTCTTGGCTCAGCAGTACAAGTCGATGTATCCAACCCTCGATATCGACGTGTATGTGGATAGAATAAAGCCCATGGTGAGAGATGGCGTGTATTTCATTTACCAAGCCCTGCACGGGCCCAAAAAGAAGATCCTTGTGGAAGGTACTTATCCCTTTGTGACCTCCTCAAACTGCACCGTGGGGGGCGTGTGCACCGGCCTGGGGATGCCGCCGCAGAACGTGGGAGAGGTATACGGAGTCGTCAAGGCCTATACCACCAGAGTGGGGATTGGGGCCTTCCCTACCGAGCAAACCAATGAAGTCGGCGAGCGTCTGCAGAGCCGAGGGAAGGAGGTTGGCGTGACTACAGGCCGCAAGAGGAGGTGTGGTTGGCTGGACCTGGTTCTGCTGAAATACGCTCACATGATCAACGGATTTACTGCTTTAGCTCTAACCAAATTGGACATCTTGGATGTATTTGAAGACATTAAAGTTGGCATTGCCTACAAGGTAGATGACGAATTAATACCTCATTTTCCAgCAAACCAAGAAATCTTACACAAAGTTGAGGTTCAGTACATCAGCCTCCCAGGCTGGAACACCGACATCTCCAACACTAGGACGTTCGAGGAGCTGCCAGAGAACGCACAGAAATACGTTCGCTTTGTGGAAAAACACCTCGATGTGCCTGTGAAGTGGATCGGCGTGGGCAAGTCACGGGAGTCCATGATCCAGCTCTTCTGA

Function

symbol description
adss Enables adenylosuccinate synthase activity. Involved in several processes, including IMP metabolic process; aspartate metabolic process; and cellular response to electrical stimulus. Predicted to be located in mitochondrion. Predicted to be active in cytoplasm. Biomarker of sarcoma. Orthologous to human ADSS2 (adenylosuccinate synthase 2).

NR:

description
PREDICTED: adenylosuccinate synthetase isozyme 2

GO:

id name namespace
GO:0044208 'de novo' AMP biosynthetic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0005525 GTP binding molecular_function
GO:0004019 adenylosuccinate synthase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K01939 purA, ADSS; adenylosuccinate synthase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001542 True 1320 mRNA 0.54 13 7112652 7133015

Neighbor

gene id symbol gene type direction distance location
AMCG00001541 NA coding upstream 91834 7016929 ~ 7020818 (+)
AMCG00001532 NA coding upstream 97315 7011905 ~ 7015337 (+)
AMCG00001531 ppm1g,LOC107660231 coding upstream 101937 7000441 ~ 7010715 (+)
AMCG00001529 LOC107717858 coding upstream 169506 6937347 ~ 6943146 (+)
AMCG00001528 NA coding upstream 238557 6871764 ~ 6874095 (+)
AMCG00001536 NA coding downstream 137403 7270418 ~ 7296604 (+)
AMCG00001535 akt3,LOC107747540,LOC105912451,LOC107666430,LOC107698756 coding downstream 167175 7300190 ~ 7305321 (+)
AMCG00001539 NA coding downstream 259058 7392073 ~ 7410053 (+)
AMCG00001540 NA coding downstream 288795 7421810 ~ 7452801 (+)
AMCG00001548 NA coding downstream 397931 7530946 ~ 7549993 (+)
G158548 NA non-coding upstream 56591 7055848 ~ 7056061 (+)
G158539 NA non-coding upstream 76586 7028187 ~ 7036066 (+)
G158435 NA non-coding upstream 323680 6787404 ~ 6788972 (+)
G158364 NA non-coding upstream 603022 6509294 ~ 6509630 (+)
G158342 NA non-coding upstream 690417 6422000 ~ 6422235 (+)
G158555 NA non-coding downstream 25235 7158250 ~ 7160609 (+)
G158571 NA non-coding downstream 36518 7169533 ~ 7169767 (+)
G158580 NA non-coding downstream 179129 7312144 ~ 7313758 (+)
G158621 NA non-coding downstream 441899 7574914 ~ 7575132 (+)
G158631 NA non-coding downstream 528569 7661584 ~ 7664572 (+)
G158537 NA other upstream 84511 7023388 ~ 7028141 (+)
G158478 NA other upstream 236074 6874768 ~ 6876578 (+)
AMCG00001509 sf3b5 other upstream 716692 6394103 ~ 6395960 (+)
AMCG00001493 NA other upstream 1211654 5889836 ~ 5900998 (+)
AMCG00001489 NA other upstream 1241222 5869975 ~ 5871430 (+)
AMCG00001550 NA other downstream 538299 7671314 ~ 7679783 (+)
G158672 NA other downstream 603500 7736515 ~ 7737890 (+)
G158676 NA other downstream 613666 7746681 ~ 7746980 (+)
G158725 kat14,LOC106584902 other downstream 800141 7933156 ~ 7933555 (+)
G158836 NA other downstream 1026131 8159146 ~ 8161815 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location