AMCG00001556 (LOC104967701)


Basic Information

Item Value
gene id AMCG00001556
gene name LOC104967701
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 7774842 ~ 7792880 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001556
CGCGTTGTCCCCACGGCCTAGCACGCTGCGTCTGTGTGCAGAGCGGAGGGACTGGGCGCTCCGGGTGCAGCACAGGTGTCTTTGTATTGGATTCCCACTTTCATTTAGCGCATATTTTCTccgtattattttttttagggtACAATCTAAGTCATGGCGGTCGAGCCGGTAGCCGCAATGTGTGAGCAGCTTGTTAAAGCGGTGGAGGTGATGATGGACGCGGAATCCAGTCAGCGATACCGCCTTGAGGCCCTTAAGTTTTGTGAAGAGTTCAAAGAGAAATGCCCCTTCTGTGTGCCCTGTGGTCTAAAGCTAGCAGAGAAGTCCCAGCCAGCAGTTGTGAGACACTTTGGCTTGCAAATACTGGAGCATGTTATCAAGTTTCGCTGGAACAACATGCCACAGCGAGAGAAGATTACGCTGAAAAATTGTGCGATGGGATTATTATCAACCGGCACATATCCCATTCTGGAAGAAGAGTGCCACATCAAGGACGCCCTATCGCGCATCATGGTGGAGATGATCAAGAGAGAGTGGCCACAGAACTGGCCAGACATGCTCAAGGAACTGGAGGCACTGACCAAGCAAGGGGAAGCCCAGACCGAGCTGGTGATGCTCATCCTCTTGCGACTGGCTGAAGACGTGGTGACCTTCCAGACGCTGCCCACCCAGCGGCGCCGGGACATCCAGCAGACCCTCACCCAGAACATGGACAGCATCTTCAGCTTCCTGCTCACCATCCTGCAGCTCAATGTCAACAAGTACCGCAAACTGaaactggatGCCACCCAAGAATTGAAGGCCAGGGCGCACTGCCGAGTGGGCGTGGCTGCTCTGAACACACTGGCGGGCTACATCGACTGGGTGGCCCTCGTGCACATCACCCATGACAACTGCCGCCTGCTGGAGATGCTGTGTCTGCTGCTGAGCGAGACGGAGCTGCAACTGGAGGCCGCAGAGTGCCTGCTCATCGCCATCAGTAGGAAGGGGAAGCTGGAAGACAGGAAGCCACTGATGGTGCTGTTTGATGATGTGGCGATGCACTACATTCTGTCTGCGGCACAGTCTGCGGATGGAGCCGGACTGGTTGAAAGGCACTACGTCTTCCTGAAGAGACTCTGTCAGGTGCTTTGTGCTCTGGGCAGTCAACTTTGTTCATTGGTGGGCTCTGATGTGGATGTAGAAGTACCAGCCAACCTTAGCAAGTATATGGAGGCATTCCTGGCATTTACTACACACTCCAGCCAGtttttaaGATCTTCCACCCAAGTCACCTGGGGCACCTTATTCAGACATGAGGTTATGTCAAAGGATCCCATCGTCATAGAAATGACTACCAAATACCTGAGAGCTACGATGACCAACCTTGTTAAGACTGGGTTCCCATCAAAAAATGACAGTCCGAGTTGTGAGTATTCTCGTGTAGACTTTGACAGCGACGAGGACTTCAATTCTTTCTTCAACTCTTTCCGGGCCCAGCAGGGTGAGGTGGTGCGCAATGCGTGCAAAATCATTCCTCTGGAAGCCTTCCAGATCGCGGGCGAGTGGCTGCGGTACCAGATCAGCACCCCCATTGACATCGGCTCCACCATGTGTAAGCTCTCTGAAGGACGGAGACAGTACCACAGAGCTGGCCAGACTCACGGAGAGTCCTTGTCCTGCGGCTTCATAGCCAAGACGGCCGAAGGCTTGTGCTCCATATTCTCCCCCTCTGTGGTCCAGTGGGATGCCATGACCTTCTTCACAGAGAGTGTAGTGGGACAGCTCTTCAAGAATGTGGAGAAGGAGAAACTCCCCACTGACCAGGGCATCGAGCTGCTGCAGGCCGTGCTGAACTACGAGACCAGGGACCCTCTCCTGTTGTCCTGTGTCCTGACCAACGTGTCCTCCCTGTTTCCCTTCGTCACCCACAGACCTCACTACCTCCCGCAGGTCCTCTCCAAGCTGTTTGCATCGATTACATTTGAAGTGATTGAAGAGAGCAAGGCGCCCAGGACCCGTGCTGTGAAGAACGTGAGGAGGCATGCCTGCTCCTCCATTATCAAGATGTGCCGAGACTACCCACAGTTCATACTGCCCTGCTTTGACATGCTCTACACCCACGTGAAGAACCTCTTCTCCAACGAGCTGCTGCTCACTCAGATGGAGAAGTGCGCTCTGATGGAGGCGTTGGTCCTCATCAGCAACCAGTTCAAGGACTACAACAAGCAGAAGGCCTTCCTGGAGGAGCTGATGGCCCCAGTGGCGGCGCGCTGGCAGTCTGAAGAGATGAGGCATGTGCTGTGGGATCCAGCGCTCTTCCTGGCCTATGTTGGTGCTGACCAGTTGATGAACGACCCGACCATTGATGACCAGAGTGGAATTAACAGGTCCAGGATCAGCTTTTGTGTGTACACCATTCTGGGCGTAGTGAAGCGGGCTCGTTGGCCTGCTGATCTGGAGGAGGCCAAGGCCGGAGGATTTGTGGTCGGGTACACCCCCAACGGCAACCCCATCTACCGCAACCCCTGCACAGAGCAGGTCCGCGCCCTGCTGCCAAACCTGCTCGCGCTCATAAGGACCCACAACAACCTCTTCCTGCCTGAGAACCTGGCCCGGCTGAGCGAGACCTTCACCAGGGCATACGACGTAATGGAGGTGGAGAAGAACGTTGTTCTGGGACTGCCGCAGCCTGTGCTGGATATCTACGACTCGCCCGTGTACAAGACCATGCTGGAGCGCATGCAGGGATTCTTCTGCACTCTGTATGACAACTGTTTCCACATCCTGGGCAACGCTGGTCCCTCCCTACAGCAGGACTTCTACACGATGGAAGGGCTGGCCGAGCAGGTGGTCAGCTCTGCCTTCGTCAGCCTGGCGCATGTCCCCGACCACCGCCTGCGGCCCATGCTCCGGGTCTTCATGAAGCAGCTGGTGCTGTCCTGCCCCACAGAGTACTATGACAGCCTTCTGTGCCCTCTCCTCGGACCTCTGTTCTCCTACATGCTGCAGGAGAAGCCCGTGACCCAGGAGATGCTGGAGGAGCAGCTGGTGAGACTGGTGACCCGGGAAGCCCTGGACCTGCTCAATGAAGAGATGATGGCCACAGACTCCTCTCAGGCCCCAGGCGCTCCCACATACCCCACAGACGAGCTGACGGAGCTTGGGAAATGCCTCCTGAAGCACGAGGACATTTATATGACCCTGCTGACCATCGCCTTCAGTTCACTGTCATGGAAGGACACCAGTAACTGCCAAAGGACTGCATCTGTGGTGTGCTGGACTCTGCTCAGACAGGTGGTGGGGGATAACCTGCTGCCCGAGGCAGTCACCTGGTTTTACACCAGCGTGCTCAAGGGCTTGCAGATGCACGGGCAGCATGAGGGCTGCAACGCTGCTCTTACCCAGCTGGCATTCCTGATCTACGACGCTTTGAGGCCTCGCTACTCTGAGCTCAGGGCAGTTATGACCCAGATCCCCAAGATACAGCTGGACACCCTGGACCTGTTTGACCAGAGGGTGTTGAACCCTGTGCCACAGAAGCCAGGGGACAAAAAGAGGAAGGATCAGTTTAAAAAGCTCATCACTGGCACAGTTGGGAAACCTCTGGGCCAGCAGTTTAAGAAGGAGGTCCACATCCGGAACCTTCCGTCACTCTTCAAGAAGGTCAAGCCGGAGGTGAAGCGGGACGCTCTGGACAGCGAGAACAGCGGCCTGGCTGCTCTCTTCACACCTCAGCCGGAGGACATTTAAGGAAGGGAAGAAGTTGGTGTGGCTCAGCCCCTGTAGTCATGGGAAATCCAGATTTGTTACCCCACCGCTTTCCCCCTGGAATGAAATgggtccttttttttttttttaaatgtagagtATTGATGACATTATATGTTGGCCACTGATCTTTCATGGTAAAGACAACAACCACATTGGTTTCTGGCAGGTATTTCGCTCTGGAGTCCTGGAAATGAGACGTGCATCTTCACATGTCCAGGACCCTGTCACCCCTTTAGAAACGGGACGCGTTTCACAATTTTCAGGCCTGCTACATAGGAAATTGGATTCTTTTTTGTGATATTGAGGcggtggtgatgatgatgatgatgatgatgatcatcCAGTCAGCAGGGGTGCTCAAAAGTGCATGTGAAGGATTGACTGATTTGACCTTTATAAAGTGATCTGAGACTGGGAGAGGTGAAAGCTGATGAAGATATAAGCTAATCTGTAAATCCGATTGGCTGACGGTTGGAATTTTTCAAGTTAGGCCTCGTCCACACTACAAAACCGATCTTTACGTTGACACTCAAAGCCTTTATGCTTTCTCTTGCTCAGAGCGGTCACCCTTAAACCCATTCTTTTGGATGAAATGTATCTAGACACCAATCATGCAGTTTGGATATGAATGTTAAGTCATGTGCTCCcactttctctgttttgttcaCTACCTCAGCACACCTGGAGCTGTAGAGACGCACCTTCTCGCTCTGTTTTTAGTTgtacaattacaaacacatatcaatttacattttttgtaggtATGCCATCTAGAATGAAGGATCAATCCTACAGTTTTAGGATATTTCTGAAGACAAATCAAGTTATAGTTCACGGTTAATTATGAAGTACTCACTCGTGACGGTCAGAAATTAACTTATTAGTTCCGTAGTCTCCACCACCTTCTGACCTGCTTTGTAGTGTGGaccttaaatatataaaggAGTCATAGTGCATCTTTAAAGAAATTGTTAAAATAACTGGCATAGATGGCCAAGGCGGGCTACATCTAGAGATGGTGCAAACGAGCTGAAGACCTTAAGAACAAAGTGCGATTCTCAAAAACCACTTTGCCAGAACttctcatttttattgtttcaaaagaaaaagtactACATTCCACTTCTGTTGTAATTTCTCCACCCGTTCAATGTACATTTAACAAatgttgcctttttaaaaaaagtaatttaattttttactaGTCATTTAAcactaaggaaaaaaaaaaaaaagatttgtaatGTACaggaatcaaaacaaatattggaAAGTATGTTGTGCTGTTTATATCATTTTGgcgtttttaataaatgtagacTTTGA

Function

NR:

description
PREDICTED: exportin-5-like

GO: NA

KEGG:

id description
K14289 XPO5; exportin-5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001556 True 5079 mRNA 0.51 30 7774842 7792880

Neighbor

gene id symbol gene type direction distance location
AMCG00001560 NA coding upstream 54731 7718794 ~ 7720111 (+)
AMCG00001558 gtpbp2,LOC108263131,LOC107751133,LOC102796526 coding upstream 64017 7696288 ~ 7710825 (+)
AMCG00001559 LOC105902337 coding upstream 86444 7686384 ~ 7688398 (+)
AMCG00001548 NA coding upstream 224849 7530946 ~ 7549993 (+)
AMCG00001540 NA coding upstream 322041 7421810 ~ 7452801 (+)
AMCG00001571 NA coding downstream 61264 7854144 ~ 7859415 (+)
AMCG00001573 pnpt1,LOC106607983 coding downstream 78273 7871153 ~ 7881358 (+)
AMCG00001572 smek2,ppp4r3b coding downstream 89836 7882716 ~ 7895972 (+)
AMCG00001574 NA coding downstream 116318 7909198 ~ 7917326 (+)
AMCG00001577 NA coding downstream 129888 7922768 ~ 7923494 (+)
G158677 NA non-coding upstream 22072 7752402 ~ 7752770 (+)
G158675 NA non-coding upstream 30809 7743558 ~ 7744033 (+)
G158673 NA non-coding upstream 33786 7740626 ~ 7741056 (+)
G158671 NA non-coding upstream 39232 7735276 ~ 7735610 (+)
G158668 NA non-coding upstream 43141 7729553 ~ 7731701 (+)
G158713 NA non-coding downstream 106563 7899443 ~ 7901353 (+)
G158726 NA non-coding downstream 140778 7933658 ~ 7933858 (+)
G158727 NA non-coding downstream 141093 7933973 ~ 7934875 (+)
G158728 NA non-coding downstream 142194 7935074 ~ 7935289 (+)
G158729 NA non-coding downstream 143392 7936272 ~ 7936478 (+)
G158676 NA other upstream 27862 7746681 ~ 7746980 (+)
G158672 NA other upstream 36952 7736515 ~ 7737890 (+)
AMCG00001550 NA other upstream 95059 7671314 ~ 7679783 (+)
G158537 NA other upstream 746701 7023388 ~ 7028141 (+)
G158478 NA other upstream 898264 6874768 ~ 6876578 (+)
G158725 kat14,LOC106584902 other downstream 140276 7933156 ~ 7933555 (+)
G158836 NA other downstream 366266 8159146 ~ 8161815 (+)
G159174 NA other downstream 2120428 9913308 ~ 9914664 (+)
AMCG00001630 NA other downstream 2364854 10157734 ~ 10159826 (+)
AMCG00001643 spred2 other downstream 2862307 10655187 ~ 10677854 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_005719 XPO5 coding NC_007124.7 CM002897.2 2861265 ~ 2892011 (+)