AMCG00001559 (LOC105902337)


Basic Information

Item Value
gene id AMCG00001559
gene name LOC105902337
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 7686384 ~ 7688398 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001559
TTTAACTCCATGGATGCAGCTCGGATCTTCCTGAAGCTGATGGAGCGCCTGGGCTTCACCGAGTTCTATCTGCAGGGGGGCGACTGGGGGTCCCTGATCACAACTAACATGGCTCAGATGAAGCCACAGCTCGTGAAGGGGCTTCATCTGAACATGTTCCCAGTGACGAAAGGGGGAATGGGAATGCTGGTCTCCCTGCTGGTGGGGCCATACCTGCCGTTCCTGGTGGGCTTCACCAGAGAGGATGTGAGACGACTGTTCCCATACTTCGAGAAGAACGTGTATGAGATGCTGAGGGAGTCGGGGTACCTTCACATCCAGGCCACCAAGCCGGACACTGCAGGCTGTGGGCTGAATGACTCTCCTGTGGGTCTGGCTGCCTATCTCGTGGAGAAGTTCTCCACATGGACGGATTTTGAAAACAGAGACCTGGCTGATGGGGGGCTGGAGagGAAGTTTTCCCTAGACGATCTGCTGACTAATGTCATGATTTACTGGACCACTGCCTCCATCGTGTCCTCAATGCGCTTctacaaagaaaacatgaagGAAAACATTCAGAAGAGGATTGATGCCAGGGTTGGAGTGTATGTGCCTACGGGCCTGGCAGCCTTCCCCCATGAAATGCTTCACTGCCCCCTGCCCTGGGCGAGATGGAAGTACAAGAACATCGTGTCTTACAACTACATGGCCCGGGGGGGGCACTTTGCTGCCTTTGAGGAGCCCCAACTGTTGGCTGATGACATCCGCCAGTTTACCAAGAAAGTGGAAAAATTACAATAG

Function

NR:

description
PREDICTED: epoxide hydrolase 1-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0033961 cis-stilbene-oxide hydrolase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001559 True 783 mRNA 0.54 5 7686384 7688398

Neighbor

gene id symbol gene type direction distance location
AMCG00001548 NA coding upstream 136391 7530946 ~ 7549993 (+)
AMCG00001540 NA coding upstream 233583 7421810 ~ 7452801 (+)
AMCG00001539 NA coding upstream 276331 7392073 ~ 7410053 (+)
AMCG00001535 akt3,LOC107747540,LOC105912451,LOC107666430,LOC107698756 coding upstream 381063 7300190 ~ 7305321 (+)
AMCG00001536 NA coding upstream 389780 7270418 ~ 7296604 (+)
AMCG00001558 gtpbp2,LOC108263131,LOC107751133,LOC102796526 coding downstream 7890 7696288 ~ 7710825 (+)
AMCG00001560 NA coding downstream 30396 7718794 ~ 7720111 (+)
AMCG00001556 LOC104967701 coding downstream 86444 7774842 ~ 7792880 (+)
AMCG00001571 NA coding downstream 165746 7854144 ~ 7859415 (+)
AMCG00001573 pnpt1,LOC106607983 coding downstream 182755 7871153 ~ 7881358 (+)
G158631 NA non-coding upstream 21812 7661584 ~ 7664572 (+)
G158621 NA non-coding upstream 111252 7574914 ~ 7575132 (+)
G158580 NA non-coding upstream 372626 7312144 ~ 7313758 (+)
G158571 NA non-coding upstream 516617 7169533 ~ 7169767 (+)
G158555 NA non-coding upstream 525775 7158250 ~ 7160609 (+)
G158667 NA non-coding downstream 39152 7727550 ~ 7728815 (+)
G158668 NA non-coding downstream 41155 7729553 ~ 7731701 (+)
G158671 NA non-coding downstream 46878 7735276 ~ 7735610 (+)
G158673 NA non-coding downstream 52228 7740626 ~ 7741056 (+)
G158675 NA non-coding downstream 55160 7743558 ~ 7744033 (+)
AMCG00001550 NA other upstream 6601 7671314 ~ 7679783 (+)
G158537 NA other upstream 658243 7023388 ~ 7028141 (+)
G158478 NA other upstream 809806 6874768 ~ 6876578 (+)
AMCG00001509 sf3b5 other upstream 1290424 6394103 ~ 6395960 (+)
AMCG00001493 NA other upstream 1785386 5889836 ~ 5900998 (+)
G158672 NA other downstream 48117 7736515 ~ 7737890 (+)
G158676 NA other downstream 58283 7746681 ~ 7746980 (+)
G158725 kat14,LOC106584902 other downstream 244758 7933156 ~ 7933555 (+)
G158836 NA other downstream 470748 8159146 ~ 8161815 (+)
G159174 NA other downstream 2224910 9913308 ~ 9914664 (+)

Expression


Co-expression Network