AMCG00001571


Basic Information

Item Value
gene id AMCG00001571
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 7854144 ~ 7859415 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001571
GATGTAGACGAGTGCAGCATGGGAACGCACAGCTGCACCCCTGAGCAGATGTGTTACAACACCAGGGGCTCCTACGCCTGCCAGTGCCTCCCTGGCTTCCAGAGGAATGGGGAACAGTGTGTAGACAAAGATGAATGTGCTGGGCCCAATTATTGCATGCACAGATGCGTGAATACACATGGCTCCTATTTCTGTGTGTGCAATCCAGGCTACCAGTTGGCCAGCAACAATCACAGTTGCATAGATGTGAACGAGTGTGAAGTCAGTAACCAGTGCCAGCACCAGTGCTACAACATCCTGGGCTCCTTCGTCTGCCAGTGTGACCAGGGTTACGAGCTGGCTATAGACACGGTGTCCTGCCAAGATATCAATGAGTGTGACACGGGTCACAACTGTCGGGAGGACGAGATGTGCTGGAATTACTACGGTGGCTTCAGGTGTTACCCCAAGAACCCCTGCCAAGAGCCGTACGTGAAAACGGCAGAGAATCGTTGCATGTGTCCGTCGTCGGCCGTGTGCAGAGGCTTGCCACAGTCCATCGTGTACAAGTACATGAGCATCCCGTCAGATCGCTCCATACCAGCGGACATCTTCCAGATCCAAGCCACCAGCATCTACCCCAACACAATTAACACCTTCCGGATCAAAGCGGGCAACGAGGGAGGGGAGTTCTTTCTCAGGCAATCCAGCAATGTCAGCGCGATGCTGGTCATGACAAAGCCGGTGTCGGGGCCGAGGGAGCACATCGTGGACCTGGAGATGGTCACTTTCAACACCGTCATGAACTACCGCTCCAGCTCACTATTACGGCTCACCATTATAGTGGGCCCTTACCCCTTCTAGTCACACTGTCACACGTGCTGTAGAAGTGCAACCAAAgaacatctgaaaaaaaaaaacacccaacaaccaaaaaaacacttaattgtttaatattgcTTAATTTTTGAGTTATCAGTTATGCAAACTATAGTCATGTAATGCCGTTATTGGAAGAGATGATGGGCAGCTTGCTTCAGTTCAAGTGTAAGGTGTCATATTAAAACCAAGCATTATAGGATGCAAATTACGTTCCTACTCTTTAATAGTACTATTGTGAGGAGCAGAAGCAGCACGAAGACGGACTGTCGATATCTCAATTTGTAAGAGCCCCCCCCTCCTGTGCAATATAATCAAcattcatttcacaatttaaatgaaCTGAAGCGACTAAAAAATAAGCCTTGAGCGCAGTTGGCcgtgaacagaaataaataggACTTATCCACTGAAAACTGCTCCTCTCCCCCCAGTTCAGAACACTTTTCCCTTGTCACATGTCAGGTTCTAGCTGTGTGGCTGAGGAGTATTTCTTACCCAAGCACTTACCTACTGGTCTACATAATTTGGGAAGCGTTTTTTGAATGTACTTCCACCGCTTTACAGATGGAAGGGGTTGTTGTGTGACAAAGGCCTGCTGGAATTTGTCGCAACTTGGAACGtctttgttgttctttgttGAAAATCACAGAGGGCAAAAATTATATCTGTCTCTTAAAAGAACGTGGCCTGTCTTTTAGATTAACTTTGTCATATATAAACTTAATAAATGTGTGCTCTCCACAGCATATGATGTGTGTTCTGCAGTCAGTGAGTGTCAGAGTTCAAGGGCATTGTTCTCCACCCATAGTCCAATAAACTATAAAAGAACAAGCTGACAATCTCATCAGTCTAGAAGTGTGTTTTGCTCTGAAACTAGTCTCTCACAAACAACGAGAGACTACCTACAGCTCAGATGCAAATACCTCCGTCTTAAACTTTTTTCTGTACcttataaaatggaaaatcctCACTAAATTCTATcaagaataaaacagaatagTTACAGATGAATTATATATCCTTACCATCATCACACCACAAACGCAACACATATCTTGGGAATCACTGTACAAGACATGGGCTTTTTGAAGATGTTTCTTTATTAACATTCACCTGAACACTATTCAGTTTAAAGCACTTATTGTCAAATTCCCAGGGATGTTTCTTGTTACCTAATCTCTCTAACATGGCAAGCGGCAGAACACTGTGGTATGAAGGGGAgatgaaagcatttttatataGGGCATATATTAGTTCATATGTACAGCCGTCTCTCTTATGTTGTAAAAGGGGGCCACAATGCATATTTTACTCCAAATACATAAGCATTTGTAGTTATCATATACTGATCCGTgtgactttttatttgtattttttttacaggttatgtaatgcttttaaaagactgaaagagaaagtgtttatttttcctctgtaAAAAAGTGCCTCAAAGATGATAGTAGATCAACAGTTTGATAAGTACACATTGTATCTTTCTATTTAAAACTGAGTTGTTTCACGTTTAATATTGGAAAAACATTTGCTCTGATGTACAAAGtaattttataatgaa

Function

GO: NA

KEGG:

id description
K18262 EFEMP1, FBLN3; EGF-containing fibulin-like extracellular matrix protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001571 True 2434 mRNA 0.43 6 7854144 7859415

Neighbor

gene id symbol gene type direction distance location
AMCG00001556 LOC104967701 coding upstream 61264 7774842 ~ 7792880 (+)
AMCG00001560 NA coding upstream 134033 7718794 ~ 7720111 (+)
AMCG00001558 gtpbp2,LOC108263131,LOC107751133,LOC102796526 coding upstream 143319 7696288 ~ 7710825 (+)
AMCG00001559 LOC105902337 coding upstream 165746 7686384 ~ 7688398 (+)
AMCG00001548 NA coding upstream 304151 7530946 ~ 7549993 (+)
AMCG00001573 pnpt1,LOC106607983 coding downstream 11738 7871153 ~ 7881358 (+)
AMCG00001572 smek2,ppp4r3b coding downstream 23301 7882716 ~ 7895972 (+)
AMCG00001574 NA coding downstream 49783 7909198 ~ 7917326 (+)
AMCG00001577 NA coding downstream 63353 7922768 ~ 7923494 (+)
AMCG00001576 NA coding downstream 64111 7923526 ~ 7928887 (+)
G158677 NA non-coding upstream 101374 7752402 ~ 7752770 (+)
G158675 NA non-coding upstream 110111 7743558 ~ 7744033 (+)
G158673 NA non-coding upstream 113088 7740626 ~ 7741056 (+)
G158671 NA non-coding upstream 118534 7735276 ~ 7735610 (+)
G158668 NA non-coding upstream 122443 7729553 ~ 7731701 (+)
G158713 NA non-coding downstream 40028 7899443 ~ 7901353 (+)
G158726 NA non-coding downstream 74243 7933658 ~ 7933858 (+)
G158727 NA non-coding downstream 74558 7933973 ~ 7934875 (+)
G158728 NA non-coding downstream 75659 7935074 ~ 7935289 (+)
G158729 NA non-coding downstream 76857 7936272 ~ 7936478 (+)
G158676 NA other upstream 107164 7746681 ~ 7746980 (+)
G158672 NA other upstream 116254 7736515 ~ 7737890 (+)
AMCG00001550 NA other upstream 174361 7671314 ~ 7679783 (+)
G158537 NA other upstream 826003 7023388 ~ 7028141 (+)
G158478 NA other upstream 977566 6874768 ~ 6876578 (+)
G158725 kat14,LOC106584902 other downstream 73741 7933156 ~ 7933555 (+)
G158836 NA other downstream 299731 8159146 ~ 8161815 (+)
G159174 NA other downstream 2053893 9913308 ~ 9914664 (+)
AMCG00001630 NA other downstream 2298319 10157734 ~ 10159826 (+)
AMCG00001643 spred2 other downstream 2795772 10655187 ~ 10677854 (+)

Expression


Co-expression Network