AMCG00001572 (smek2,ppp4r3b)


Basic Information

Item Value
gene id AMCG00001572
gene name smek2,ppp4r3b
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 7882716 ~ 7895972 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001572
ATGTCGGACACTCGGCGGCGTGTGAAAGTCTACATGCTGAATGAAGACCGGCAGTGGGACGACAGGGGCACCGGGCATGTCTCGTCTACCTATGTCGAGCGGCTCAAGGGGATCTCCTTGTTGGTCCGGGCAGAATCCGATGGTTCGCTTCTATTGGAGTCTAAAATCAGCCCAAACACAGCATATCAGAAGCAACAAGACACCTTGATTGTCTGGTCGGAAGCGGAGAATTACGACTTGGCTCTGAGTTTCCAAGAAAAGGCCGGCTGTGATGAAATCTGGGAGAAGATTTGCCAGGTTCAAGGAAAGGATCCTGCGGTGGAAATTACCCAGGACCCCATCGACGAGTCGGAGGAGGAGCGCTTCGAGGAGATGCCCGAGAGCAGCCATCTGGTGGACCTCCCTCAGTGTGAATTGAACAAGCTGGAAGAGATCGCCGACCTCGTCACCTCGGTCTTGTCCTCCCCCATCCGCAGAGAGAAGCTGGCGCTGGCCTTAATGAACGAGGGCTACATCAAGAAGCTGCTGCAGCTCTTCCAGGTGTGCGAGGACCTGGAGAACACCGAGGGCCTGCACCACCTGTACGAGATCATCCGAGGAGTGCTGTTCCTCAACAAGGCAGCCCTGTTCGAGGTCATGTTCTCTGACGACTGTATCATGGATGTGGTGGGCTGTCTCGAGTATGACCCCTCTCTAGTGCAGCCCAAAAAGCACAGGGAGTTCTTGACCAAAACTGCCAAGTTCAAGGAGGTAATACCCATTACAGACTCCGAGCTGCGGCAGAAAATCCACCAAACGTACAGGGTGCAGTACATTCAAGACATTATCTTGCCAACGCCATCAGTGTTTGAAGAGAATTTTCTCTCCACGCTGACCTCCTTCATTTTCTTCAACAAAGTCGAGATTGTCAGCATGTTACAGGTCAACTTCTTTAAAGAGTTTTGTGCATTTTCACAAACATTACAGCCTCAGAACCGGGATGCATTTTTCAAGACGCTTGCAAATTTAGGGATTCTTCCTGCACTAGAAATTGTTATGGGCATGGATGACTTGCAAGTGAGGGCCGCAGCGACAGACATCTTTTCTTATTTGGTGGAATTTAGTCCGTCCATGGTTCGGGAATTTGTCATGCAGGAGCCTCAGCACAATGAAGATGACATCCTTCTGATCAACGTAGTCATTAAGCAGATGATCTGTGACACGGACCCCGAGCTGGGTGGAGCTGTCCAGCTGATGGGCCTTCTGCGCACCCTGATTGACCCGGAGAACATGCTGGCCCCTACAAATaaaacagaaaagactgAATTTCTCAGCTTTTTCTACAAGTTCTGTATGCATGTTCTGACTGCCCCTCTTCTGGCCAATACAGCTGAAGAAAAAAGCGTTAAAGATGGTGTGGTCGGACCCCCTAAGATCGGTGCTGTGTGTCCTGATAATTTCCAGACTGCCCAGTTGCTGGCCTTAATTTTGGAGCTGCTTACCTTCTGTGTGGAGCATCATACGTACCACATAAAGAACTATATCATGAACAAAGATCTGCTGCGGAGGGTCCTGGTGCTGATGAACTCCAAACACACCTTCCTGGCATTATGTGCGCTGCGCTTCATGAGGAGAATTATTGGCCTGAAAGATGAGTTTTATAATCGCTACATCATTAAAGGCAACCTTTTTGAGCCAGTGATCAATGCCCTCTTGGACAATGGAACAAGATACAATCTTTTAAATTCGGCTATTATTGAGCTCTTTGAATTCATCAAAGTGgaGGACATTAAATCCCTCATAGCACACATAGTTGACAACTTTTACAAAGCACTTGAGTCCATTGAGTACGTTCAGACCTTTAAAGGACTGAAGACCAGATACGAGCAGGAGAAGGACAGACAGAGTCAAAGACTCAACAGATACCGTCGGGACGCCAGGGCCATGGAGGACGACGAGGAGATGTGGTTCAATGAAGATGATGACGAGGAAGGCGAGGCAGTGCCTCCCATCGAGAAAAGCAAACCGGACGATGAATTTCCCGACAACTATGGGAAGTTCATTGAAGCAATAAAAgTTAAAGAAAGTGAGGACAAGGAGAATCTCCCCAAGAGGACCTCCAGTGGCAGCTTTAAGTTTACCTTCACTCATTCTGCAGCAGCAGCTAACGGCGCCAATGGTGCCAACAGCAAGTCTGTGGGTTCGCCCCCGTCGCCTGCCAGTCCCAACAGCTCCTCTGCCAAGTCCACCAACTCGCCAGCAACGGCCATGACTAAGGCAGGACTGGTGGGTCTCGTGGATTACCCAGatgatgaggaggaagaggaggaggaggaagagtcTCCACGGAAGCGACCCCGTCTGGGATCGTAAAGGCCTGGGCGCTGGAAAACGTGTAACAATGGTGCCCCTGTTCCACAGCCCACTGGACTGAGAAACCTctcctccccttccctcctccccccttccccctcctccAACACAACTACCAGGATAGAAGCCGACCAGAGGAGTAGCAAACAGGGTGCCAACGTTCCTGCTAGGCAAGCTTAGAGTCCCGGCAGGAGCTCCGCACCTCCCACGATCTGTGTCTTTTACAAGAGTGAGGGGAGCAGGGGTGGTGGGACGTCAATCAGGCTGGTAGGACTAGCGAGTTAGTAATGAAGGCCTGATTGGCTGAACCTCACAGCTATGGACCCTCACACTGACGGGAGgactacaggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatcacatttagtTCCAAGGAGCAGGACTCAGACTTTGAAACTTTTAGTCTCCTATTGAGGTGGCTAATGCTGGAACTATGTCAGTAAGGAATCCtgtattcataattttattaaaagtactgtacagtgtgttaatttttttttttttttttttaatcgtatATACCCCATGAAAATATTCCCAGGAACTAGACCTGCCTGACCGTTTTAGGTGGAACCACTGCTGACCCTTTTAATCGAGAAATTGAATTAGTTATCGTAAGCACAGTTGTAATGCTGGTTTTAAAACATTGGAACGGCAGTAAAGCGGCGTGTTTTGCTGTCCACGGGGAACATGGCGatcattttaatctgttttggCTGTTCGACTTACAGGTTTCAAGGTACCctcttatttacatttcttacaaGTGGTATATTTTTTAGGGAAACACTattttgataaaatatatatatatatatattgcaaaaatCAGGGACTTGAGAACCAGAATTGGGGTGCAACCGGTGCATTTAGAGTAGCAATTTTTTTAAAACCCTTCCGGAATTGTTAAACATGCTCGCCtctatttccttttaaatgaacaggacttgatttgtttgcatacaaATTCCAAGGTTctactttttagttttctttttaaacctaATGCAACTAATCCTTTAATTTGCAGAGGAAGCGCATCTCCAGACCCAGACTGTTCACCTGTACAGGTAGTAAGAGTGTGCTTCCTCAATCTGCAATGTAAACTTTCACAAGTTTAGCACTGGTTGTTAAACTAGCTACAGCCAACAGATACAGGCATTCCTATTGAGACAACTTAGTTTGGAAATGGTGAAAGCAAAGGTAAGAAGAGCATTTCAGACTAAATTAGTATGCCCAATTTGGGGAAGATCCTATAGTTCTGTGTAAGCATTTCAAATATAGGATGGctgtagaattttttttttttttttcttctgtaactTTTGTATAAATGAATGAACTGCCACTCTCCATTCTACaccatttgtatacatttgatattaaaaaaaaaaaaaaaaaa

Function

symbol description
ppp4r3b Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human PPP4R3B (protein phosphatase 4 regulatory subunit 3B).

NR:

description
PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 3B isoform X2

GO: NA

KEGG:

id description
K17491 SMEK, PPP4R3; protein phosphatase 4 regulatory subunit 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001572 True 3793 mRNA 0.46 15 7882716 7895972

Neighbor

gene id symbol gene type direction distance location
AMCG00001573 pnpt1,LOC106607983 coding upstream 1358 7871153 ~ 7881358 (+)
AMCG00001571 NA coding upstream 23301 7854144 ~ 7859415 (+)
AMCG00001556 LOC104967701 coding upstream 89836 7774842 ~ 7792880 (+)
AMCG00001560 NA coding upstream 162605 7718794 ~ 7720111 (+)
AMCG00001558 gtpbp2,LOC108263131,LOC107751133,LOC102796526 coding upstream 171891 7696288 ~ 7710825 (+)
AMCG00001574 NA coding downstream 13226 7909198 ~ 7917326 (+)
AMCG00001577 NA coding downstream 26796 7922768 ~ 7923494 (+)
AMCG00001576 NA coding downstream 27554 7923526 ~ 7928887 (+)
AMCG00001575 snx5,LOC106611592 coding downstream 44162 7940134 ~ 7962377 (+)
AMCG00001567 rrbp1 coding downstream 80115 7976087 ~ 7995881 (+)
G158677 NA non-coding upstream 129946 7752402 ~ 7752770 (+)
G158675 NA non-coding upstream 138683 7743558 ~ 7744033 (+)
G158673 NA non-coding upstream 141660 7740626 ~ 7741056 (+)
G158671 NA non-coding upstream 147106 7735276 ~ 7735610 (+)
G158668 NA non-coding upstream 151015 7729553 ~ 7731701 (+)
G158713 NA non-coding downstream 3471 7899443 ~ 7901353 (+)
G158726 NA non-coding downstream 37686 7933658 ~ 7933858 (+)
G158727 NA non-coding downstream 38001 7933973 ~ 7934875 (+)
G158728 NA non-coding downstream 39102 7935074 ~ 7935289 (+)
G158729 NA non-coding downstream 40300 7936272 ~ 7936478 (+)
G158676 NA other upstream 135736 7746681 ~ 7746980 (+)
G158672 NA other upstream 144826 7736515 ~ 7737890 (+)
AMCG00001550 NA other upstream 202933 7671314 ~ 7679783 (+)
G158537 NA other upstream 854575 7023388 ~ 7028141 (+)
G158478 NA other upstream 1006138 6874768 ~ 6876578 (+)
G158725 kat14,LOC106584902 other downstream 37184 7933156 ~ 7933555 (+)
G158836 NA other downstream 263174 8159146 ~ 8161815 (+)
G159174 NA other downstream 2017336 9913308 ~ 9914664 (+)
AMCG00001630 NA other downstream 2261762 10157734 ~ 10159826 (+)
AMCG00001643 spred2 other downstream 2759215 10655187 ~ 10677854 (+)

Expression


Co-expression Network