AMCG00001573 (pnpt1,LOC106607983)


Basic Information

Item Value
gene id AMCG00001573
gene name pnpt1,LOC106607983
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 7871153 ~ 7881358 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001573
CTCGGACGTTGCCCCGCCCACTGCCCTACGTCAGAAAGTGTCATGTCAGCCTACAGTACCTGCAGCACTGGTTTAATCAGGCTGCTTTGCCATTCAGAGCTTTTCTCAACTCGCTACCCCACCATGAGACACTTGCTCGGCCTGGGGTCCCGAGTGGCTCGGACTCATGGCAGGGGCTGCCATCAGAGCATCTGGAAGAGCCACGGCGCCGTGGGGAAAGTCGGAGTGGATATAGGAGAAAGAAAACTCGAGATCTCCACAGGGAAGCTGGCCAGATTTGCTGATggctgtgctgtagtgcagCTTGGAGACACATCTGTGATGGTGACAGCTGTCAGTAAAACTAAGCCAACATCCTCACAGTTTATGCCACTAGTAGTGGATTACCGACAGAAAGCTGCAGCAGCCGGGAGAATCCCCACTAATTACCTGAGGAGGGAGCTGGGAACGACAGATAGTGAAATTCTCACCAGCAGACTGATCGatcGCTCCATCAGGCCGCTGTTTCCTGCTGGCTATTTCTATGACACACAGaTCCTGTGTAACCTGTTGGCCGTTGACGGGGTGAATGACCCTGATGTACTTGCCATTAATGGAGCTTCTGCGGCCCTTGCACTCTCGGACATCCCATGGAATGGACCCATTGGGGCAGTGCGTGTGGGTCTGGTTGACGGAGAGTTTCTGGTGAACCCGACCCGGATGGAGATGGCTTCCAGCACTTTAAACCTGGTGATCGCTGGAGCCCTGCACAGCCAAGTGGTCATGATGGAGGCTGCAGCGGAGAACGTGCTGCAGCAAGATTTCTGCCACGCCATCAAGTTGGGAGTGAAACATACCCAACAGATCATTCTCGCCATCCAGCAGATGATGAGGGAACAGAAAGTGTCCAAGCGCACCCCCGCCAAACTCTTTGCTGCCCCTGTTGAGATGGTGCAATATGCAAGACAGCTGGCCTCAGAAAAGATCTATGCAGTTTTCACAGACTTCACCCATGACAAAATTTCAAGAGATGAAGCTGTTAACAAAATCCGTCTGGACACGGAGGAGCAGATAAAAGAAAAATATCCCGAAGCCGACCCATACGAGGTGATGGAAGCCTTTAACACCGTTTCCAAGGAGACTTTCCGAAATTTAGTTCTGAATGAATACAGAAGGTGCGATGGAAGGGACTTGACGTCTCTGAGGAACATTTCCTGTGAGGTGGACATCTTAAAGCCCCTTCATGGATCTGCCCTGTTTCAAAGGGGACAAACTCAGGTTCTTTGCACAGTGACATTCGACTCTATAGAATCAAGTATTAAAACTGACCTGATCACTTCAGCTGTAagTGGAGTCAAAGACAAGAATTTCATGTTGCACTATGAGTTTCCCCCCTACGCCACCAATGAGATTGGCAAAATGGGTGGCATCAACAGGAGAGAGCTCGGCCATGGGGCCTTAGCGGAGAAGTCCTTGAAACCAATCATTCCCAAAGACTTCCCTTTCACGATAAGAGTCACGTCCGAAGTGTTGGAGTCCAATGGATCCTCTTCTATGGCCTCAGCCTGTGGTGGGAGCCTGGCTTTAATGGATGCAGGTGTGCCGATCTCGTCTGCTGTCGCTGGTGTCGCCATCGGCCTCATTTCAAAGCCAAACCCAGAGAAGCCCTCTGAAGTGGAGGATTACAGGATTCTCACTGACATTCTGGGAATAGAGGATTACAATGGAGATATGGATTTCAAAATGGCGGGAACAAACAAGGGAATTACAGCTTTACAGGCGGATATAAAGATTCCTGGATTGCCACTGAAAATTGTCATGGAAGCTATTCAACAAGCTACAGTGGCTAAGAGGGAGATATTGGCCATAATGAACAAGGCGATTGCAAAACCCAGGCTAAACAGGAAGGAGAATGGGCCCGTAGTAGAGAACGTCAGGGTTCCTATCTCGAAGCGAGCCAGATTCGTTGGGCCAGGGGGGTATAACCTCCGGAAACTACAAGCAGAAACAGGCGTTACAATCAGCCAAGTGGACGAGGAGACGTTCTCTGTGTTTGCGCCCACTCCCGCTGCCATGCATGAAGCCCAGGACTTCATCACTGACATCTGTAAAGACGATCAAGAGGAGCAGCTGGAGTTTGGGGCTGTGTACACAGCCACCATCACCGAAATCAGAGATATTGGAGTCATGGTCAAGTTATATCCTAATATGAGTGCTGTGCTACTCCACAATTCTCAGCTGGACCACAAGAGGatcaGACATCCGAGTGCTCTGGGACTTGATGTTGGCCAACAAATCCAGGTGAAGTACTTTGGGCGCGACCCCACAGACGGGAGGATGAGACTCTCCCGGAAAGTTCTGCAGTCACCTGCGGCAACTGTTGTGAAGACCCTGACTGACAAACACAGTATCGCCATGGGAGCGGGCGACTCTCAGGGCGCGAACTCCTCTTAACCCCTCTCGGTCTCGGAGCGTGGAGCGTTTTGTTGGTGCTTAAGGCCACACTTGAGCTACCCATTTCTTAATTACAGTCATCTGTAAGCTGCTAACATTTCACATGGTTTTTCCTTCATAAATACAGTGGTGCTCTGGTGCAGTATTGTTTATGAAGGTGTACAGAAAAGAACATAGCCACTTGGTGTACTAAGAGGTTCTCTACCCCAAACCTGATTTTAATCAATGTCGGATTTTTGGTCGTACCAATTTCACCCCTATGAGTTTTTCACTCCTGACCCATTCACACAAGAAACCTCTCTTGGAATGTGGCTATTTTATGGATCTTTATTGAGTGAGAGGAAAGCCATAAAGGCTATTAAGTCTCATTTTGATTTATGaagcaaaaacaattaaccttttctagttaatatattttttaaactttaattaagAAACGGAGCCAAGTTAGACAGTGGCATACACTTCCAGAGGCAAGTCAACATTACACAATGAAGAACAGCTTTGCAATGGCCTGtgtggataaaaaaataaactagttCTAGTTTCAAGCACCCTGTATAAAATTCTGTATCCTTTGATGTTTTTAGActcttgtatgtatgtatttaaaatgttttataaaataaatatggaaaatgaaA

Function

symbol description
pnpt1 Enables 3'-5'-exoribonuclease activity; RNA binding activity; and polyribonucleotide nucleotidyltransferase activity. Involved in several processes, including RNA metabolic process; cellular response to interferon-beta; and positive regulation of cellular catabolic process. Located in cytosol and mitochondrial intermembrane space. Part of mitochondrial degradosome. Implicated in autosomal recessive nonsyndromic deafness 70 and combined oxidative phosphorylation deficiency 13.

NR:

description
PREDICTED: polyribonucleotide nucleotidyltransferase 1, mitochondrial-like

GO: NA

KEGG:

id description
K00962 pnp, PNPT1; polyribonucleotide nucleotidyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001573 True 3077 mRNA 0.48 28 7871153 7881358

Neighbor

gene id symbol gene type direction distance location
AMCG00001571 NA coding upstream 11738 7854144 ~ 7859415 (+)
AMCG00001556 LOC104967701 coding upstream 78273 7774842 ~ 7792880 (+)
AMCG00001560 NA coding upstream 151042 7718794 ~ 7720111 (+)
AMCG00001558 gtpbp2,LOC108263131,LOC107751133,LOC102796526 coding upstream 160328 7696288 ~ 7710825 (+)
AMCG00001559 LOC105902337 coding upstream 182755 7686384 ~ 7688398 (+)
AMCG00001572 smek2,ppp4r3b coding downstream 1358 7882716 ~ 7895972 (+)
AMCG00001574 NA coding downstream 27840 7909198 ~ 7917326 (+)
AMCG00001577 NA coding downstream 41410 7922768 ~ 7923494 (+)
AMCG00001576 NA coding downstream 42168 7923526 ~ 7928887 (+)
AMCG00001575 snx5,LOC106611592 coding downstream 58776 7940134 ~ 7962377 (+)
G158677 NA non-coding upstream 118383 7752402 ~ 7752770 (+)
G158675 NA non-coding upstream 127120 7743558 ~ 7744033 (+)
G158673 NA non-coding upstream 130097 7740626 ~ 7741056 (+)
G158671 NA non-coding upstream 135543 7735276 ~ 7735610 (+)
G158668 NA non-coding upstream 139452 7729553 ~ 7731701 (+)
G158713 NA non-coding downstream 18085 7899443 ~ 7901353 (+)
G158726 NA non-coding downstream 52300 7933658 ~ 7933858 (+)
G158727 NA non-coding downstream 52615 7933973 ~ 7934875 (+)
G158728 NA non-coding downstream 53716 7935074 ~ 7935289 (+)
G158729 NA non-coding downstream 54914 7936272 ~ 7936478 (+)
G158676 NA other upstream 124173 7746681 ~ 7746980 (+)
G158672 NA other upstream 133263 7736515 ~ 7737890 (+)
AMCG00001550 NA other upstream 191370 7671314 ~ 7679783 (+)
G158537 NA other upstream 843012 7023388 ~ 7028141 (+)
G158478 NA other upstream 994575 6874768 ~ 6876578 (+)
G158725 kat14,LOC106584902 other downstream 51798 7933156 ~ 7933555 (+)
G158836 NA other downstream 277788 8159146 ~ 8161815 (+)
G159174 NA other downstream 2031950 9913308 ~ 9914664 (+)
AMCG00001630 NA other downstream 2276376 10157734 ~ 10159826 (+)
AMCG00001643 spred2 other downstream 2773829 10655187 ~ 10677854 (+)

Expression


Co-expression Network