AMCG00001604


Basic Information

Item Value
gene id AMCG00001604
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 8763121 ~ 8774091 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001604
tttttgcatttgtattctgAGTTGTTATACACAGTTATTTTctgataattaaacaaatatctaGTCATGTGctaataaccttttttgttggcTCTGGAAAAATTAGTGCTTTGGGTCAAATGCAATTTTGGATTTACAAATGAACCTTTCTCCTGAACTTGTGACTCTCCTTGCTTGTGACTTCTCTCCTGTGTTACTTTGTGACACAGAACATGAATCGGATATGAGTAAGGGCGAATGCGTTTAGTTTATCTTTGTAGATTATGTTAGGCTGATGAAGAGAAAAGCTGTAATGATAAGAAGTTGACCACAGAAAATGATTGGACATTCATTGGTAATGAATGGGCGCAGTGTGGAGtagaggtcagggctctggacacGCTGGAGGCTTGTGGGTTCAGTCACAGTTGGGGGATTCTCCttcttgagcaaggtactttacatGGCTTGCaccaataaaaacacagctgtagaAATGACTAATGTTTGTAAAAACATAATGTGGTATATTTAGAATTGTATGTGACCCTGGATTTCcttagaaatgtaataatgtattatactcAAAGAAATATCTGtctacaaaaatatttatagcaAATGTGTAATTATACCAAGGAAAGTCATTAGGGGTTGCACAGCTGATAAGTATATGCTAAAGTGGATACTCTTGCACTAGAAATACTGAACCAAAACATTCGACTTGCGAAGCCTTCTCAGGTTACTTCACTGGATTACTATTTTGACTATGAAAAAGAGACAGGGAGGAGTTTGCATTCTGCGTGACTTTACTTTCAGTAGGACAGCACCTTTCACATGAGCTGGGAACTGCTGCACAGGGCTTATTGTACTGCCGATCAGGATACAATGCAGTGCCACGTGGATCTGATGCAGTGGCTGAACTGGGTGTTTATCTTGGCAGGGGTTGCTTATTTCTTCAGGCAGAGTTTTGCTCACACTCCTTACGGGCGCTATGTTGAAGGCACAGAAAGCTGCTGGATGGTGCCCGCTAAAGCTGCCTGGTTCATCCAAGAGGTGCCATCCTTCCTTGCGCCTGCAGGTTTGTGCTACTTTTGCAATGGGAAGTCCAGCATCGGGAGGAATCTGCTTCTAGGGACATTCTGCTTCCACTACATCCAAAGgcAGCAGACTTTTGATTCGGATGCGCTAGGTCCACCTGCGCACGGCGCGCTACCTGGCGGGACCCTTCCCATAACCCCCCGCTGCCGCCCGGCCCTGCCAGGCTGGGAAGTCACCATGTTGTCCTGCAAAGCCCTGTCTGTTACCTATAGCTGTATGCTGACTGCGGGGGCCGTCGTGTTAAGCTACAGACAGAGGTCGAGACAGACCCCTTACGGGCGCTATGTCCGGCACTTTGGGGCTTGGAAACCGGTGCCGGCGAAACTGGCTTGGCTGGTGCAGGAGCTGCCGTCGTTTTTCGTGCCGCTGCTGCTGTGGGCCACCGCGGGCGAGACCAGCGTGATAGGCAGGACCCTCCTGCTGGCGCTCTTCTGTGGACACTATTTCCAAAGGTCCTTCATCTACGCTTTGTTAACCAAAGGTCGCCCTTCTCCTTTTTTCATTGTGGTGTCTGCTGTGATCTTCTGCACGGTCAACGGCCTGTTCCAGGGCTCGTACATGCTGTTCTGCGCGCAGTATGACGAGGCCTGGCTCACTGACATTAGACTGATTCTGGgtttaactttgtttttccTGGGCATGGCCATTAATATCCACAGTGATCACATTCTGCGCAATTTGAGACAAACTGGGGAGGTCGTGTACAAGATTCCCAGAGgtgGCTTGTTTGAATACGTCTCCGGTGCCAATTTCTTTGGGGAGATTATCGAGTGGTTTGGATATGCTATAGCAACCTGGTCTTTGCcagctttttcttttgcctTCTTTACGATGTGCTCCATTGGACCCCGAGCCTTCCACCATCACAGGTTCTACCTCCAGAAATTTGAAGATTACCCAAGAGCGAGAAAAGCTCTAATACCATTCATCATTTAAGAAGACATCCAGAGCGCTCCATTGCACAGATGTTTATCACTTTCTTAAACATGACCATGTTAAACAAAGACTATTCATTTGGTTACAAACTCAGTGTTGTACATGGAGCgtgtaatttatttcacttttccCTGCCAACAGTATGATTAGTGTAAACACTGTCCCTGTTGAGTTTGACCAAATGTCTTTTCTCTACCAAGAAGAATTGGGGGATCATACAAGGTTATAAGGGTTTCCTTTTGCGGAACATATTGCCGTTTCATTATTGCAATCCTTTTCTGTGAGGTTAAATGGCTGCTCAGGTGTTTCCTTTAATGTGTGAAGCCTCATCTCATTCTAATGCATTCCATCCTCTATTGTATATGTCCTCAGCTGGGGTGTCTTAATCCAACCTTCCAACACAATATTTGCATATCAGAACACGGGGAAGTTTACAATTAAGAGGAGCCCATTTGGATTATCTTGCTCTTATGAAGTAATTAAAGCACAAGCAGTCAATGACATGGCTGGATAGATTGAACCAGATTGTCACAGCTTTAGTTGTAAAGACTTGTCACCAgttttctgtcctgaatgcTCTTaaatttgtttccatttattttaaactttatatgcacacaaaaaacCTTGTTTCATAATATTGTTCATAAATTATCTATACCTTTTGTAGCCTTTGATTTGCTTTGCAGTCAGATACATTTCTGTTGTACCTTGTAATCGTTTGGTTGTACCCACATTCGAGTGATTCTGTAAAGCACATTTCCCCAATCTGtttctctttaaataataaagtttgcTCTTTTGAAATTACAACTCGGTGTCAATCAGTTACCGATTTCATTGGAAAGTCCAATTTAATCAAAAACCTCTTTCTGGATCAGAAGTATTTGATAAAACGAGCAACAAAAATCAGGAATCTCTTTCCCTGGAAGATTCATTGGTGTTTTAATCTTACTGGCAACCCTGCCACTCACTAAATCAGAAACAAAGTGCCCCTTGCCAACTGGGAAAGGTGTCGTCTTGCCTCTCCTACTCAATCTGTTCAAAAACCGAGGAAGTGGGATTTGTCTACATCTTTTTGT

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors molecular_function

KEGG:

id description
K12344 SRD5A2; 3-oxo-5-alpha-steroid 4-dehydrogenase 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001604 True 3098 mRNA 0.43 7 8763121 8774091

Neighbor

gene id symbol gene type direction distance location
AMCG00001603 memo1,LOC107654980,LOC107705412 coding upstream 4611 8748296 ~ 8758510 (+)
AMCG00001605 LOC106564822,LOC106586224 coding upstream 23099 8738472 ~ 8740022 (+)
AMCG00001606 NA coding upstream 97460 8659527 ~ 8665661 (+)
AMCG00001599 LOC106564825,LOC108430145 coding upstream 131660 8606654 ~ 8631461 (+)
AMCG00001602 strn,LOC102790911,LOC102314492 coding upstream 188104 8570684 ~ 8575017 (+)
AMCG00001610 NA coding downstream 31230 8805321 ~ 8815317 (+)
AMCG00001614 NA coding downstream 173322 8947413 ~ 8966738 (+)
AMCG00001613 btbd3 coding downstream 243775 9017866 ~ 9028794 (+)
AMCG00001617 LOC107600566,LOC107654988,LOC107662809 coding downstream 319678 9093769 ~ 9135363 (+)
AMCG00001616 ism1,LOC107662810,LOC103134171,LOC103134168 coding downstream 375926 9150017 ~ 9155016 (+)
G158857 NA non-coding upstream 458281 8302550 ~ 8304840 (+)
G158837 NA non-coding upstream 505932 8165773 ~ 8257189 (+)
G158823 mrpl14 non-coding upstream 660706 8101451 ~ 8102415 (+)
G158788 NA non-coding upstream 724580 8035301 ~ 8038541 (+)
G158771 NA non-coding upstream 763409 7997910 ~ 7999712 (+)
G159041 NA non-coding downstream 2846 8776937 ~ 8777745 (+)
G159101 NA non-coding downstream 436029 9210120 ~ 9214347 (+)
G159142 NA non-coding downstream 542020 9316111 ~ 9369910 (+)
G159170 NA non-coding downstream 1088869 9862960 ~ 9863228 (+)
G159169 NA non-coding downstream 1095077 9869168 ~ 9869603 (+)
G158836 NA other upstream 601306 8159146 ~ 8161815 (+)
G158725 kat14,LOC106584902 other upstream 829566 7933156 ~ 7933555 (+)
G158676 NA other upstream 1016141 7746681 ~ 7746980 (+)
G158672 NA other upstream 1025231 7736515 ~ 7737890 (+)
AMCG00001550 NA other upstream 1083338 7671314 ~ 7679783 (+)
G159174 NA other downstream 1139217 9913308 ~ 9914664 (+)
AMCG00001630 NA other downstream 1383643 10157734 ~ 10159826 (+)
AMCG00001643 spred2 other downstream 1881096 10655187 ~ 10677854 (+)
AMCG00001645 NA other downstream 1973398 10747489 ~ 10757858 (+)
AMCG00001691 NA other downstream 3555888 12329979 ~ 12333700 (+)

Expression


Co-expression Network