Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00001616 |
| gene name | ism1,LOC107662810,LOC103134171,LOC103134168 |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030143.1 |
| NCBI id | CM030143.1 |
| chromosome length | 20516281 |
| location | 9150017 ~ 9155016 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| ism1 | Acts upstream of or within angiogenesis and hemopoiesis. Predicted to be located in extracellular region. Is expressed in several structures, including margin; midbrain hindbrain boundary; midbrain hindbrain boundary neural keel; shield; and tail bud. Orthologous to human ISM1 (isthmin 1). |
| description |
|---|
| PREDICTED: isthmin-1 |
| id | name | namespace |
|---|---|---|
| GO:0001525 | angiogenesis | biological_process |
| GO:0005576 | extracellular region | cellular_component |
| id | description |
|---|---|
| K24435 | ISM; isthmin |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00001616 | True | 1242 | mRNA | 0.60 | 5 | 9150017 | 9155016 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00001617 | LOC107600566,LOC107654988,LOC107662809 | coding | upstream | 14654 | 9093769 ~ 9135363 (+) |
| AMCG00001613 | btbd3 | coding | upstream | 121223 | 9017866 ~ 9028794 (+) |
| AMCG00001614 | NA | coding | upstream | 183279 | 8947413 ~ 8966738 (+) |
| AMCG00001610 | NA | coding | upstream | 334700 | 8805321 ~ 8815317 (+) |
| AMCG00001604 | NA | coding | upstream | 375926 | 8763121 ~ 8774091 (+) |
| AMCG00001618 | ndufaf5 | coding | downstream | 63613 | 9218629 ~ 9229998 (+) |
| AMCG00001626 | NA | coding | downstream | 81395 | 9236411 ~ 9247003 (+) |
| AMCG00001634 | snrpb2,LOC107684252 | coding | downstream | 812399 | 9967415 ~ 9970362 (+) |
| AMCG00001635 | NA | coding | downstream | 816337 | 9971353 ~ 9972980 (+) |
| AMCG00001633 | pcsk2,LOC107699156,LOC106607177 | coding | downstream | 859207 | 10014223 ~ 10050694 (+) |
| G159041 | NA | non-coding | upstream | 372272 | 8776937 ~ 8777745 (+) |
| G158857 | NA | non-coding | upstream | 845177 | 8302550 ~ 8304840 (+) |
| G158837 | NA | non-coding | upstream | 892828 | 8165773 ~ 8257189 (+) |
| G158823 | mrpl14 | non-coding | upstream | 1047602 | 8101451 ~ 8102415 (+) |
| G158788 | NA | non-coding | upstream | 1111476 | 8035301 ~ 8038541 (+) |
| G159101 | NA | non-coding | downstream | 55104 | 9210120 ~ 9214347 (+) |
| G159142 | NA | non-coding | downstream | 161095 | 9316111 ~ 9369910 (+) |
| G159170 | NA | non-coding | downstream | 707944 | 9862960 ~ 9863228 (+) |
| G159169 | NA | non-coding | downstream | 714152 | 9869168 ~ 9869603 (+) |
| G159204 | NA | non-coding | downstream | 914914 | 10069930 ~ 10070334 (+) |
| G158836 | NA | other | upstream | 988202 | 8159146 ~ 8161815 (+) |
| G158725 | kat14,LOC106584902 | other | upstream | 1216462 | 7933156 ~ 7933555 (+) |
| G158676 | NA | other | upstream | 1403037 | 7746681 ~ 7746980 (+) |
| G158672 | NA | other | upstream | 1412127 | 7736515 ~ 7737890 (+) |
| AMCG00001550 | NA | other | upstream | 1470234 | 7671314 ~ 7679783 (+) |
| G159174 | NA | other | downstream | 758292 | 9913308 ~ 9914664 (+) |
| AMCG00001630 | NA | other | downstream | 1002718 | 10157734 ~ 10159826 (+) |
| AMCG00001643 | spred2 | other | downstream | 1500171 | 10655187 ~ 10677854 (+) |
| AMCG00001645 | NA | other | downstream | 1592473 | 10747489 ~ 10757858 (+) |
| AMCG00001691 | NA | other | downstream | 3174963 | 12329979 ~ 12333700 (+) |
