AMCG00001628


Basic Information

Item Value
gene id AMCG00001628
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 10212874 ~ 10221718 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001628
ATGGATAACTGCGATCTGGAGAAACTCTCTGTCTGCACGGGAAAATTAGATCCTCCTTTTCAGCCACTGATAACAAATTATAAAGTGAATGTCCCGAGCAACGTCAATGGGATGAACATCATTGACATTGAAGTAATAGCTGAGGATGGCACGACTAAAAAGTACACCATCCAGGTAACTAAGCTGTCCGCCAGCACTGCAGAGCTGCACGGTCTCCAAATACCTGGGCATGCGCAGCTGCAGCCGGAATTTGCTCCGGACGTTTTTGAATACACATGTACTGTTGCTTTTTGTATAACTGCTGTAACTGTGCAGCCAAAGGTGCCAGACAGCAACATGCAGGTGTCAGTGCAGGACGCAGACGCATGCGTGGCTGTGCAGCTGATGGTTGGAGAAACTCTGGTTGAAGTCCAGGTTTCTTCAGCAGATGGCACCAAATCCCAACTGTACACAGTCGTGATCACTCGGGAACAGATTCCTCATATTGTCACTTTCAATGATTTAAAAGACCAGATCGAGTTTGAGTGTGCTATCTCTCTAACGGCATTTTACAGGCCTGTCTCAATTAATGGGAGGTCAAAGGTGGACCCCCTGGATGAGCGTCCTCTAGGAGAGGGCTGGAAGACCCCCGAGTATGAGGTGGAGAGGAGGATGAGCGCAGCCCTTGTGAAGTGTTGCTTCAGCTTTCAAGGTTGTGAGACTGTTGTGAAATTCTCAGATCTCGGGGAACATGCGATACACTGTCCACATAAGCAAGAGCCAAAGCTGGATGCAAAGGAGGTCACAGACTCGCAGTGGTACAAGACTGACTTTGCATCTTCAGATAGTCCTGAGATTCAGACCAAACATACTCTAGAGgCAAGAAACTGGGAGAGGAGACTGCACAAAGCATTGGGAGACAACGACGTGGACAAACTCTGCCGAGACCTTACTCAGTATGAAGGAGTATCTCCTCTCGATGCTTTGCACCACGTAGCTGTAGACTATGCTTCAGGGATCAGCCTGAATtcaagagatccaaggctgcaCTTCTGTTTGGGTCTGGCCCTGGAAGAACACTATTATGCTACTGAAATCTACGGGCTGAAGAAAAAGGCCAAAGAGGAAACACAAGACCTCAGCCATGCCAAGGCTGCTGGTAGGGAAGAAGAAATCCTGGCTATTTGTAGGCTGCATGGACTCCAGGGTCAGCCATCTCTGGAGAACCAGCTCAAAGCTTTGGATGCTGAGTTTCAGCAGCTGAAGGAACAAGGCCAGTCCAGCAGGGCTGACTACATCCAGACCCTTTTCATCTGGCTATCAAAGCAGGCTGGAAAGAGTGGAAGGGCTATGGTTTCGGATGAAGAAAGTCCACTCCACCGAGCATTTCTGAAGTATCTGGATGCCTGGTCTTTGAATCCTGAGCACTGGGAGTACAATCTCTATGTAGGCAGGCATCTACTGCTGCAGGGGAAATGCAGAGAAGCACTACAACACCTACAGAAAGCTCTCGCCCTGCAGCCCTGCAGAGCGTCCACGAGGTTTTACACCGGCCTGGCTCTGCTGCAGCAGGACGGAGGGCCGGGTCCGCGAGAGCAGGAGGCAGTGATGTATCTACAGCAGGGTCTGGAACATGTCCTCGCTCAACACTTCACCACGGCAGGGGGCTCTCCAGAGAGagaaCACCTAGAGGCGGCAATCCCCCTCTCTGTTACGAACGCGCAATTCCTGAGGGGCTGCCTGAGTCTGGGAGAGTGGCTGAGAAAAGCTCCAGGTCCCGGGAAATCCATGAGCGCCGAGCAGGTCCTTCACATCGTGGCGGATGCTGCAGCGCGGAGTGTGTGTGGGCGGCCATCTCGAGGGGCAGTGGGCCAGCAGCTGGAGTGGGTGCTGCTGGAGGCACACTATTCCCTCCTGGAGGATCTCGTGGCTCAGCCCAGGGGCAGAGAGCACTGGATCGCCAAGCGGTGCCAAGGGTTAACTGCCCTGATAAGACTGACTTCCATTCCCGCCTGCAGAGAGCTCCTAGACATGCAGGAAAAGGTCTGCCAGTTAGGAGTCCGTGCCACTCCCTGCAGCAGTCACGCTCTGTACCTCCTGGGTGCAGCACAGCTGGCTCAATACGATAACAACCCCGACTCCAAGGACAGCCCACGTGTGCTCGGCGAGGCCCGCCTCAGTTTCCGAGCCAGCATTGACCTTGAGGACATGCCAGATTCTGGACCTCCCCCGACACAATTAGCAAgcCAGAAGTGGTGGCAGGAccaggtagagagagagaaagagaaggggaAAGCTACTGAGCCGTCACTCAATGTAACAGCGCCCGCAGGGAGAGGAACAGCCCGGGGGAGAGGGGCAGCAGCTAGACAGCGGGCCGCAATGCCAGCAAAAGCCCCTGGCGCCCGTCCAGGAGGGACTCCCTCGCCAAGAGCTGTGCCCACTGCCCAACCCAGCGCTGCCACTGCTCCTGCTGCAAGGGGGCGAGCTGGTGCAGCAACTCCAACCAAGTCAACGGGGCCAAACTCATCTCCCAGTAAAACCTCAAAAACACAAGTCATACCCAGGAAGTCAGACAAAGCAGACTGCTGTCAAACTCCAATAAAACCAGCGACCAGTGAAGACCTTCCAGAGCATAAGGCCACAAGTGCCGTCAATATACCCGTTTCAGTAAACCGAAGATCACACACCCCCCGGCTGGGTCTCGCCCGCGCTCTTTCCCGGACTGAAGACACCCAAGGCCAGGCCTGCCAGCTCTATGAAGAAgTTCACGATGCCTACATCGAGCTCGCTGACCTGCTGATGAAGTCTGATCCTCTGGCCGCCGTGGAAATATACTGCAGGTTTCCTCTGAAAGCTGCCGCGGAGCAGACCTTCGACGATGCCTTCATTACAGGAGAGATCGTGAGGATTCTTATGAAACAAGAGTTGTTTGATCATCCAAACTTGGCTTCAAACTTCATTGCGTATGGAAAGGTCATGGGACTACgatgcctggaaaaatacattagtgttcttgaagagaaatacaaaacaaatctcttgAAGACCATTTATGCAGGCATCTACGATAAAGCCGTCGAAGACAAGGACCTTCAGGAGTTTTTTCGATTCAAATGCTGGTTCTAA
>TU200475
CGGACAGCTACTCGTGTCGTTCATTTCCATCTTAACAAACCGTCTGTAAGTGCAAATGCAATGGATAACTGCGATCTGGAGAAACTCTCTGTCTGCACGGGAAAATTAGATCCTCCTTTTCAGCCACTGATAACAAATTATAAAGTGAATGTCCCGAGCAACGTCAGTAAAATAACATTAGATCTACTAACTAGCGACAGCGGGGCATCATACAAAATTctgGGTGGTGACGGGTCAAAGGTTATTCAGCTGAAAGATGGGATGAACATCATTGACATTGAAGTAATAGCTGAGGATGGCACGACTAAAAAGTACACCATCCAGGTAACTAAGCTGTCCGCCAGCACTGCAGAGCTGCACGGTCTCCAAATACCTGGGCATGCGCAGCTGCAGCCGGAATTTGCTCCGGACGTTTTTGAATACACATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001628 True 3108 mRNA 0.53 20 10212874 10221658
TU200475 False 428 TUCP 0.46 2 10221169 10221718

Neighbor

gene id symbol gene type direction distance location
AMCG00001627 pno1 coding downstream 4749 10205495 ~ 10208125 (-)
AMCG00001638 NA coding downstream 45562 10163175 ~ 10167312 (-)
AMCG00001636 NA coding downstream 55653 10120109 ~ 10157221 (-)
AMCG00001637 NA coding downstream 151594 10051336 ~ 10061280 (-)
AMCG00001624 LOC105021512 coding downstream 284952 9898415 ~ 9927922 (-)
AMCG00001629 NA coding upstream 93341 10315059 ~ 10328348 (-)
AMCG00001642 meis1b,LOC106613898,LOC104951697,LOC107551348 coding upstream 269786 10491504 ~ 10504479 (-)
AMCG00001649 actr2,LOC108423375,LOC106585927,LOC104930021,LOC108441254,LOC105021597 coding upstream 455644 10677362 ~ 10694822 (-)
AMCG00001647 NA coding upstream 498748 10720466 ~ 10724151 (-)
AMCG00001648 slc1a4,LOC102791775 coding upstream 509183 10730901 ~ 10746052 (-)
G159205 NA non-coding downstream 142541 10069926 ~ 10070333 (-)
G159196 pcsk2,LOC107561970 non-coding downstream 181649 10017778 ~ 10031225 (-)
G159188 snrpb2,LOC107594438,LOC107684252 non-coding downstream 242558 9969375 ~ 9970316 (-)
G159183 NA non-coding downstream 344532 9863788 ~ 9868342 (-)
G159134 ndufaf5 non-coding downstream 989635 9221566 ~ 9223239 (-)
G159271 NA non-coding upstream 189014 10410732 ~ 10413357 (-)
G159300 NA non-coding upstream 410855 10632573 ~ 10633073 (-)
G159301 NA non-coding upstream 435104 10656822 ~ 10657844 (-)
G159302 NA non-coding upstream 443781 10665499 ~ 10665822 (-)
G159315 rab1a,rab1ab,LOC102783297,LOC107096932,LOC103375385,LOC108239170 non-coding upstream 491665 10713383 ~ 10714724 (-)
AMCG00001625 NA other downstream 247466 9952372 ~ 9965408 (-)
AMCG00001615 NA other downstream 1109840 9074089 ~ 9103034 (-)
G158971 map1lc3c,LOC107701141 other downstream 1672616 8514367 ~ 8540258 (-)
AMCG00001583 ggps1,LOC107728322 other downstream 1960670 8225569 ~ 8252204 (-)
AMCG00001594 NA other downstream 2117148 8092328 ~ 8095726 (-)
G159303 NA other upstream 448719 10670437 ~ 10671241 (-)
AMCG00001702 NA other upstream 2709513 12931231 ~ 12937243 (-)
AMCG00001704 fam135a,LOC107601029,LOC107747270,LOC107665594 other upstream 2720643 12942361 ~ 12977026 (-)
AMCG00001710 NA other upstream 2773919 12995637 ~ 13105424 (-)
G159976 NA other upstream 3925910 14147628 ~ 14151555 (-)

Expression


Co-expression Network