AMCG00001643 (spred2)


Basic Information

Item Value
gene id AMCG00001643
gene name spred2
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 10655187 ~ 10677854 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001643
ATGAAAACTGATATATCTAGAAAAGCAGAtgactgttttatttgtgaagTTGACCGAACCTCTTTCCCTTTCTCACGCAGTGACAGCTACATTGTGCGCGTGAAAGCAGTGGTTATGACCCGGGATGACTCTAGTGGAGGATGGCTTGCACAAGAAGGCGGTGGACTGAGCAGAGTTGGGGTCTGTAAGGTCATTCACACGGAGCTGGGCGGGAAAAGTGACTTCCTTATTCTCGGAGAGCGGCTGAAAGATAAACAGgTTATTCTAGAGTGTTTCTTAAAGAAGGACTTGATTTACACAAAGGCGACCCCCACGTTTCACCACTGGAAAGTTGACAACAAAAAGTGTGGGCTGACTTTTCAGAGTCCGGCAGATGCACGTGCATTTGACAGAGGTGTAAGGAAAGCAATCGAAGACTTGACAGAAGgATCTACGACTTCCTCTTCGACAATCCAGAATGAGGCAGAGGTGGGCGATGATGATGTGTTCACGaatgctaCCGATAGCTCTTCAAACTCTTCCCAGAAGAAGGATCACTCTATGCAGGCGCTGGCCTCCCCTAATTTCTGTGAAGCCCGAAGACATCGCTGCATCCTGGGCCACTTACATGACCATTACAGCACCGCGGACCACTACCTTCTGGATCAGtCTGTGCCTAAACTTCCGCGTCACGTCAGCTTCCAGGACGACGACGAGGAGATTGTGCGCATCAACCCTCGAGAGAAGACCTGGTTGACGGGCTACGAGGACTACAGACACGCGGCCGTGAGGGAGAAGTTCATTGACCCCGAGGACGTAGACTCCTATGTACAGTTTGCCAAAAGCGAGGCTTCAAAGCACGACTATAACTACCCCTACGTGCCCAATTCTGACTTGAGTCACAAGGATCTGAAGGGCGGCGGGGGAGTGGTGAACACACAGCCTCGATCCTTCAAATCCAAGTCCCGGCGGAGGAAGGAGGATGGGGAGCGCTCGCGGTGCGTGTACTGCAGGGACATGTTCAATCACGAGGAGAACGGCCGGGGCCAGTGCCAGGACGCTCCCGACCCCATACGAACCTGCATCCACAGGGTCAGCTTCATGTGGTGCGCGGACAGTTTGCTTTACCACTGCATGTCGGACCCTGAGGGGGACTATTCGGATCCCTGCTCCTGTGACACCAGCGACGACCGGTTCTGCCTGCGCTGGCTGGCGCTGGTCACCCTGTCCTTCCTGGCGCCATGTATGTGCTGTTACCTGCCACTGCGTGCCTGTTACCAGTGCGGCGTGGCGTGCAGGTGTTGTGGAGGGAAGCATAAAGCCGTGGGgtgatttttcttgtttttcttcggTTTTATCTTTTCTGAATTCCAGATGGGGGGGGTGAATAATTTGGAGCTTATTGGCTTTGGGTTTTTATAAACTCTGAGGGGACGTTTCTCTCACCTCAGCCTCTAGCAAAAGAAATTCCCAGTTCTTTGGGCCTCTAGTGCCACCATGTCATGCATTATAAAGGACTAACCAATGATTACTCATTTATATGTAAACAGgtactttatatttttacactgaTTTGTTTTAAGAACTTGAATTCTTTTTTATGTTGAGTGTGGTTGATGTGAgcataattttagtttttgttcttttgccATAGCTTgccaagtaaaaaaacaaaaaaaacaaaaaaacattttccttctgCAAGCCATGGCACTGACACTAAACTGGCATaattccccccctccctccaaaaaacaaaaccagaaatgacaacaacaacaaaatgattCACCTGAGACACTTAACCTGTAGTTGGgtggattgtgtgtgtatgttgtaaTTGCATACATGTGCTTGTATGGAAGTGGAATGGTAACAATGTATCATAGCATAACATTCTTGTTACTGTACTGAAGCCAAAATTACAACCTAAGCTGcagcatatatgtgtgtgtgtgtgtgtatgtatatatatatatatatgtatatatacatacatacatatatatgtgtatatccACCATAATTTCTTATTTACAGGTAGACTTCAATATCCGtcataagatttattttttttattttgtttttttcctcttactGGTTTAAAAGAAAGCCTTAGGCATTTTAAGGTGTGATGTTTAATATCCAAAGATACAGacaacctttatttttattttattcttcactAAACTGAGACACCAGCCAAAGGGAATGGGGGCAAAATATAATGTCATATAGTATAAGCACAGCCATGAATATGAAGAGATTGTCAGTAAGAAGGAAGGTCAATCTACACTAAGCCCACTCGTGTTTTTAAAGGTGCTGTTCGGTTTGTtgttaaagacaaaaacactaaaatgtaaatttgaattaagTAATCAACTCTGAGCCCTGTTGCACATCGCAGTAGCCCACACGCAGTCTGTTCAGAACCAGTCTGTGCAGACCTAAAacttattaaaatcattaacatGCATACTGCAGTTTAACTGTGATGAAAGCGACTGACCACCATTTTTAGAAGTTTTAAAAGCACTCACATCAATTGAAAAATTACTTGTGAAGGGTGCTCATTTGTAAGGCGTTTTGCCAAATCCAGCATGCTTTGTTTCTATTAGACAGTCCCTGGAGAACTGAAGATGTGAAATATGCCTTTAACTTATTAGAAACAGGATTGGATCTGACTTGTAGCTCCCTTCATAAACCAATACTAACTGTGTTGGTGGCAGTAGTGGCATGAAACTCTTCCCAGTGGTGCGAGTCTTCACAGAGTACTGCCAGTCCGTGAGGGAGAGCCAAACACATATTTTACCCATGTTCTAAGCTTTTAATTAGCTTGAAAAGAgtatttttctaatatatttcaATGATAGCAGTTCTAGCTAATAGCATAGTACAATCTGACATTCTGAGGTAGCCAGCAGTGACCTGTTGAAGCTGGCTCTGCTTTTCTGCATTGAGATTGCCAATGGCAATGTGCCCTTTCCCTATTGTCCATTAAAATGGGTCTTAAATTCAGACAAGGAACCCCCctaatatatattgaattactTGTCAGCTTTTTGATTATGTAACTGTACCAGTTTTGCATCGTATTCAGACACTTGCAAGGTGCGTGTAACCATTGAGTTCTCCAGCTCATTTTGTAAACCTATTTTGTAGCTTGTGCTGCTTCTGGTGTTAGGTTTAAATATTGGTTATTAAAGAAAGGGATGGAATAGGTAGTCAATAAGGgtgacaaataatatatatatatatacatatatatatatatatatatatatatatatatatatatatatatgcatgcatgcaatATATTTGATAGAAACACAAACCAGCCTCGAGTAAATCTACCCTATAACCTTACCTGTAGGATGACTATAAGGTTTTTATCTATATAAGAAGCACAACactaatacaacattttataaatattgtgcaAGTCACTCTGATGTGCCCCAAAGCTTGTTGTCATGTATACACCAGTATGCACTTAAGGCCTTTATGTCCTGGTGTAAATCTGTATTGAAAGCTCTCGCTGTACTTGCACTCTAGTCTATGAAATGGTGATGGAAATGTGGGGAAGGCTGATGGACTCTTGTATATACCAGTTCTCATTGTGTTTCCCAGTCTCAAGGTCTCCAGTGTGTATTGTCACCCTAGTCAGCTTTGCAATACTGGCATCATACATTGTTAGAGaataattaaattttatttttgtatctgtggTAAGGAAGTTAACCAAAAGCGTTTTCATCTGTCTGGTGCACAGTCTAGCTAATGCACACATTTAACTATTAAAAGAAAGTGCCTGAAgcatactgtacatttactaTCTCCTTATATactaaaaaagaataaaatgaaCCCTGTTGTAttgattagttttgttttttacaataaGCATTTTTACCtctgtaaaaagcaaaaaatatatatatatcaagtgtatgatgtacatttttagttctatttttttttattgtttctaatATGTATGATCAATGTAGctcttgctttaaaaaaaaaaaaaaaaaaaaaaaaagaa
>TU200526
ATATTTGATAGAAACACAAACCAGCCTCGAGTAAATCTACCCTATAACCTTACCTGTAGGATGACTATAAGGTTTTTATCTATATAAGAAGCACAACactaatacaacattttataaatattgtgcaAGTCACTCTGATGTGCCCCAAAGCTTGTTGTCATGTATACACCAGTATGCACTTAAGGCCTTTATGTCCTGGTGTAAATCTGTATTGAAAGCTCTCGCTGTACTTGCACTCTAGTCTATGAAATGGTGATGGAAATGTGGGGAAGGCTGATGGACTCTTGTATATACCAGTTCTCATTGTGTTTCCCAGTCTCAAGGTCTCCAGTGTGTATTGTCACCCTAGTCAGCTTTGCAATACTGGCATCATACATTGTTAGAGaataattaaattttatttttgtatctgtggTAAGGAAGTTAACCAAAAGCGTTTTCATCTGTCTGGTGCACAGTCTAGCTAATGCACACATTTAACTATTAAAAGAAAGTGCCTGAAgcatactgtacatttactaTCTCCTTATATactaaaaaagaataaaatgaaCCCTGTTGTAttgattagttttgttttttacaataaGCATTTTTACCtctgtaaaaagcaaaaaatatatatatatcaagtgtatgatgtacatttttagttctatttttttttattgtttctaatATGTATGATCAATGTAGctcttgctttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagatccAGTTACAATAACTGCACTTGGCACTGGATACACGTTTATGCAAAATTGAATATGAAGTGCCTCCAATATACACATGAGAGCCAAAAACTTAAATACCAGCTTTTACAATGTCTCCATGTCTAGTGACACCgatttgttattaatattacaaatattttatccCCTCCTGAAATTGTGATTAATTGAAATCAGGGAGCCCAGTCCCTCTAAAACAGAACAATGAAATTTCCGCAGCTCCGTGTTGAAGGGTGATGATCATACATGACATGACTACACATTCTTGCTCTCTACTCAAGAGAAATGTAACTGCACTGCAAAATGAAAGagtacgaaaaaaaaaaaataccccccttcccaccccacccaccccccccagcgaaaaaaataaaattttaaaaagaattgATCGGTCCTTATTCAAAATGTATCGCCTCACACGAAATTCCTGAATACAGAGGCAGAGGACATAACCGAAAGGATTGCGATGGCGTCTTTGAACAACTTATTTGTCGAGACGACCATTTCGTTAGGAAAGCTCCGAGCGcacagtggaggaggagggCCAGAGAGAGCAGCTTGCATTTTCCTCCACGATTCTCGAACCTAAGAGAAAGCCACCCCACCCGGTGTGCTGAAGACAAAAGCAAGCAGGCCTGTTGctataaatgcaaaaaaaaaaaaaaaaaacattacaaaaagaaagacagtaTAAGAGATATCAGCGGCACTACAAGGCAATAACAAGGCCCAGGACCGGCCTGCTGTTGTCGTTTTGTTTTACGGGGCAATAGTAAAAGTTAAACAGTCAAATCTGGTGGCCAtaacatacagaaaataaaaccttcccAGGATAATAAACCCACCCCCATCTCCCCAACATCCCCTCCCTCCCGGGCACAACCCCCATCTGATGGATGAGCGAGTTTGAAGAAAGTAGCAGAGAAAGTAAAGAGGTGAGAAGAAAGCTGAAGGAGATGGCGGTGTAGGAATGTCCGAGCTTATCTAACAGTGACCCCCAGCTTCTCTAAGACACGCATGCCCTTCTCCTGGTACTCCTCCCGGGTCAGCCAGAAGTTGTCCTTGTCTTTCATGATGTCGGCCAGCACAGCCCCGCCCAGGAACACCATGTGTTTGCGGCGAGGGGGGTCCTCGATTCGGATCTTGAATTTCTGTAGTGAGCGGGAAGGGGGAAAAGACAAATGCGGTTACtgcaagtgcatttaaaatagagTAACACGATACTGTGGTGGATTTGGGCCAGAGGTAACTGATCTATAACTTCCAACAATCCTCAAATGAAAGAAACCAGAAGGGCTTCCTACCGTATACGCTACTGTCATTTCTGTGTTAGCAGAAATGTCccgtaaacaaac

Function

symbol description
spred2 Enables protein kinase binding activity. Involved in negative regulation of peptidyl-threonine phosphorylation. Predicted to be located in cytoplasmic vesicle.

NR:

description
PREDICTED: sprouty-related, EVH1 domain-containing protein 2 isoform X2

GO: NA

KEGG:

id description
K04703 SPRED; sprouty-related, EVH1 domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001643 True 4030 mRNA 0.41 6 10655187 10669909
TU200526 False 2116 lncRNA 0.40 2 10669176 10677854

Neighbor

gene id symbol gene type direction distance location
AMCG00001639 c1d coding upstream 429105 10222565 ~ 10226082 (+)
AMCG00001640 wdr92,LOC107699151,LOC103374796 coding upstream 443113 10208776 ~ 10212074 (+)
AMCG00001641 ppp3r1b,LOC108441257,LOC107594412,LOC107558205,LOC107577029 coding upstream 453252 10199198 ~ 10201935 (+)
AMCG00001632 LOC107580235 coding upstream 477289 10174132 ~ 10177898 (+)
AMCG00001631 LOC103355666,LOC100697573,LOC101465959,LOC102795325,LOC106577087,LOC108243857 coding upstream 557384 10095360 ~ 10097803 (+)
AMCG00001646 NA coding downstream 17112 10694966 ~ 10705277 (+)
AMCG00001644 rab1a,LOC107676578,LOC103035225,LOC107666439,LOC107601860,LOC105005759,LOC107725478 coding downstream 32019 10709873 ~ 10717682 (+)
AMCG00001657 NA coding downstream 118874 10796728 ~ 10797750 (+)
AMCG00001654 NA coding downstream 174019 10851873 ~ 10870202 (+)
AMCG00001650 peli1b,LOC107583279,LOC107583565,LOC107720901,LOC107670869,LOC107654901 coding downstream 227620 10905474 ~ 10918546 (+)
G159273 NA non-coding upstream 206441 10441947 ~ 10448746 (+)
G159250 NA non-coding upstream 336043 10315061 ~ 10319144 (+)
G159204 NA non-coding upstream 584853 10069930 ~ 10070334 (+)
G159169 NA non-coding upstream 785584 9869168 ~ 9869603 (+)
G159170 NA non-coding upstream 791959 9862960 ~ 9863228 (+)
G159294 actr2,actr2a,LOC108423375,LOC104930021 non-coding downstream 6928 10684782 ~ 10687436 (+)
G159333 NA non-coding downstream 82122 10759976 ~ 10760189 (+)
G159356 NA non-coding downstream 163243 10841097 ~ 10843834 (+)
G159377 NA non-coding downstream 289480 10967334 ~ 10968401 (+)
G159378 NA non-coding downstream 291547 10969401 ~ 10972090 (+)
AMCG00001630 NA other upstream 495361 10157734 ~ 10159826 (+)
G159174 NA other upstream 740523 9913308 ~ 9914664 (+)
G158836 NA other upstream 2493372 8159146 ~ 8161815 (+)
G158725 kat14,LOC106584902 other upstream 2721632 7933156 ~ 7933555 (+)
G158676 NA other upstream 2908207 7746681 ~ 7746980 (+)
AMCG00001645 NA other downstream 69635 10747489 ~ 10757858 (+)
AMCG00001691 NA other downstream 1652125 12329979 ~ 12333700 (+)
G160026 NA other downstream 3591761 14269615 ~ 14270190 (+)
AMCG00001760 mpc1,LOC107725004,LOC106589821,LOC107693783 other downstream 4653766 15331620 ~ 15334580 (+)
AMCG00001762 NA other downstream 4754483 15432337 ~ 15439031 (+)

Expression


Co-expression Network