AMCG00001663


Basic Information

Item Value
gene id AMCG00001663
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 10992078 ~ 11042644 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001663
AGGTTTGGTATCAGCCGCCAACCAGCAACGCCCATGTCCCTCTGGCGATGTCTGGCTCTGGTGAGAAGGGCAGGTGGCAGAGTGCCCCTCGCCTGACGCAACAGAGACCAGGAGGAGTCCAGGAAAACGTGATCTACTGGTCCTGCCCTGTGCGCCTTCCCTGGCTTCTCTTCACGGTTCAGCACAAATCAGGAGTGGGCTTCACCACAGCCTGCAGCCTCGCCGGCGCACAGGAGTGGAAAAGAGAGTTGCGTCAGAGAACCCTAACACCCATCAGGAGAGTTATCTTTtatgttgttgtctttttttttccattcttgtTTCAACAGAATCAAGtttcccttcacaatcagatGTCTTTCTGCCTGACTGAGCTGCACTTGTGGTCCTTGAGGAGTTCCTTGCATGTCAGAGATACAGATATTGGCACGTATCAGTACTATGATAAAGGAGAGCCAGtcACACCGACAGATCATCATTACTTTGAAGAGAAGCAGCATTTTTTGGAAActCGCGGGCATCCATGGACTCCCAAGAATAGGCGTCCCGAGAAACTTCGAGACACGCTGAAGGAGCTGGAGGAGCTGCTCCAAAGCAGCCGCTGTGTTCGAAGCAAATGGAGGAACAAGCACTTCTGTCAGaTGATCCTCGGTTCAGGTGTGCTGGTGTCTCTCAGCCTCTCTGGGCCACAGCTGGAAAAAGTGACAATCGACAAGACCCTGGTGGGCAAGCTGGCCGCTGACACCATCAGTGATGCTGTACTCACTGACAGATTCATGATTTTGACATTCCTGGAGAAAAACAAGGTTTGTTACATCCATTTGACAAAGAAGCAAAGCTCTCCAGACATCAGCAAGAGGTTGGAAAAGCTCTCCTTTTCAGAACTTAagGTCTCCTATGTGGATTTGCCTGGGCCTGCTGGACGCAGACTGGAACGGCGGGTGGCTGTAAACTGCTTGCAGGATGTAGCTATTTGCTGGTGGCCAACAGTTAATGATGATGCCTGGCCTTGGTCTCCCATCTCCAGCGAGAGAGACCGAGCCAACCTGGTGCTGCTGGGCTGTGCAAACGCTAGCCTGAAGATTCTCAGCTGCATTCGCACCGAGTGGGACCCTCTGGACTGTTGCTTCAGCATCACCCAGCCCTACCAGGTCCTGACAGTGGAGCACTCTCTGGGCACGCACAGGGAGTGGATGGCAGACAGCTGTGCGTACGAGTGTGCCCGGGGCCGGATCCAACGGCTGGCAGTCACCAGCATCCCCCTCACCGCCCGGGCCATCTCCTGCAGCCGAGACCCCACGGAGAGCAAGCTTGTCCTGGGCTGCCTGGACTCCTCACTGGTGCTGTACGACGGGCACCAAGGGGTCACCCTCCTCGCCCAGGCAACCGCTCTGCCCTCCCTGGTGGAGTGGCACCCCCAGGGGGCCTTGCTGTTGGTGGGCAGCAGCCAGGGGGAGCTGCAGTTCTTCAACGTGGCCCTCTCGCCCATCAAGGTGCAGCTGCTGGCGGAGGACCTGAGTCCTACCCCCACTCTCCAGTTCAGTCGGCACCTGAACACCCCGGGAGGCCTGGCACGAGTGCAGTGGGCAGCTGCCCGTTTGCCCCCCCATGGTGCAGATGGCCTGGAGGTTCATGACCTGCTGTTCGTCAGCTTCGACGGGGGACCAATAGGAGCCTTGCGTCTCAGACTtgGTGCCACTAACGGGGGCCAGCTGGGGCCAGTAGACATGGCCCTCCAGTGTATCCGCTACAACCAGGTGGACGAAAGTATTAACATCTTAAGTGGCATCAACTGGAATACAATGGGACCGGACTCCTACAGGTGTCTAATTGCCATTGTGGATCATCTACTCCGGCAGAAGTTAACAGTGGATACAGAAGCTCAACTCGAAGCTGCTCTGGGAACCTTTTACGCTCCGTCAAAACCCCTGTCTGACACCACAGTGCTGGAGTACCGGGATGCCATCAGCAAGTATGCCCGACGCTTCTTTCATCACCTGCTCCGGTACCAGCGATATGAAAAAGCTTTCCTGCTGGCAGTGGACATAGGAGCCCGTGACTTGTTTATGGCCCTGAGCACTCATCTCTCTGACTCCCTCTCCGAGCAGGCTCAACTGGCAGCGACCGGCCAGGCCCATCCAGCCACTGAGCCCCTAACGCACCAGCGCTCCCCTCTTAATCACTGGGGgccggcagcagcagcagaagctGTGATCGTTCCCCTTTCTCCTCGGTGCACAAAAGGGGACATCCATTACTTAGCCCTAGATAAGGGGGAATTGGTGCTGGCTGAAGTGGCGAAGAAAAAGGCTAATGAAATTGATGCAGAATCAATAACCACTGGACTGGAAGAGCAGGCTTCCTTGCTTGAAGGTGAGACCCTGAACGAACACCTCCCTGACGCTCCCATGGACAGACAGAAGGTCGGACTGCCCCCCCGAGGGCCCAGCGCAGAAAGAAGCCTGCAGTGCCAAGGCAGTCCCTCTCAGGACAGATCACGCCTCCGACCTTCTAGCCAGACTCTGTCAGGCCAGCTGGGGAGGGAGTTGGCAGTTGAGGCCTATACAGCCGCTCTAATGGACGACCCCTGGGCCTGGACACAGGCAGGAAATAATCTGGCTGAAACCGGAGATCAGGTAATATGCTTTTATCCTCTAACATCCACTCAAGTGAGCACTCAAAACTGCCGTATGATCAATACAGCTCGCCCCTTATCCTGTCTGAGTACCTTGTGTACCTTTGGACTTGTCCTGAAGAACTGCTGTTTAAATCGAGTGATGTGTTTCTTATTAGCATCGAGACTGCCTTTCCGGGTGAATTTAGcatcacattttgattgttaGATCATAATATGACGTGTTCCATAAAAATATTGAATCGGTtccatacagaaatgtattgagAGGCATGGACGTCCTGTTGATACATTTACCCTTACTATGTGGAAGGGCTCTTGCACCCTCTGTTCTTTTGGGATTTTGACACCTTTAAATGTTATTTGCACAAGGAAGTAGTGCAGATTTGCAAGAAATCATTAGTATAAAGAACAGGAACAATGCGTGTGGAAGATTTTTCTTTAGTCCTTCAGAAATAGTGTCCGTGTTCTCCAGGTTGTACTCACGGACAGCAGGTGGACACACTGCAGTTGCTGGCTTGACCATGCATTTTTCAGTGCAGTACATCCTTGAAAAACACAATCGATCCTCTACCTTTGCTAATGTTgtctttataattaatttaccaatttttgtttatcttttagGTAACTGGAGAAACTGGATCTCTCAAAGTAGTTC

Function

GO: NA

KEGG:

id description
K22863 WDPCP, CPLANE5; WD repeat-containing and planar cell polarity effector protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001663 True 3296 mRNA 0.53 18 10992078 11042644

Neighbor

gene id symbol gene type direction distance location
AMCG00001651 NA coding upstream 54159 10919255 ~ 10937919 (+)
AMCG00001650 peli1b,LOC107583279,LOC107583565,LOC107720901,LOC107670869,LOC107654901 coding upstream 73532 10905474 ~ 10918546 (+)
AMCG00001654 NA coding upstream 121876 10851873 ~ 10870202 (+)
AMCG00001657 NA coding upstream 194328 10796728 ~ 10797750 (+)
AMCG00001644 rab1a,LOC107676578,LOC103035225,LOC107666439,LOC107601860,LOC105005759,LOC107725478 coding upstream 274396 10709873 ~ 10717682 (+)
AMCG00001665 cct4,LOC107700877,LOC102790717 coding downstream 232640 11275284 ~ 11280488 (+)
AMCG00001664 NA coding downstream 238660 11281304 ~ 11287784 (+)
AMCG00001669 LOC107715966,LOC108438731,LOC108269901,LOC107689808,LOC107744605,LOC107583557 coding downstream 267926 11310570 ~ 11325141 (+)
AMCG00001679 NA coding downstream 295723 11338367 ~ 11346415 (+)
AMCG00001678 usp34,LOC106585779 coding downstream 303915 11346559 ~ 11372681 (+)
G159378 NA non-coding upstream 19988 10969401 ~ 10972090 (+)
G159377 NA non-coding upstream 23677 10967334 ~ 10968401 (+)
G159356 NA non-coding upstream 148244 10841097 ~ 10843834 (+)
G159333 NA non-coding upstream 231889 10759976 ~ 10760189 (+)
G159294 actr2,actr2a,LOC108423375,LOC104930021 non-coding upstream 304642 10684782 ~ 10687436 (+)
G159441 NA non-coding downstream 174675 11217319 ~ 11221908 (+)
G159483 NA non-coding downstream 394018 11436662 ~ 11439612 (+)
G159594 NA non-coding downstream 583027 11625671 ~ 11647452 (+)
G159775 LOC102207824,LOC102800191,LOC107693914 non-coding downstream 1634167 12676811 ~ 12679489 (+)
G159798 NA non-coding downstream 1743151 12785795 ~ 12876686 (+)
AMCG00001645 NA other upstream 234220 10747489 ~ 10757858 (+)
AMCG00001643 spred2 other upstream 314224 10655187 ~ 10677854 (+)
AMCG00001630 NA other upstream 832252 10157734 ~ 10159826 (+)
G159174 NA other upstream 1077414 9913308 ~ 9914664 (+)
G158836 NA other upstream 2830263 8159146 ~ 8161815 (+)
AMCG00001691 NA other downstream 1287335 12329979 ~ 12333700 (+)
G160026 NA other downstream 3226971 14269615 ~ 14270190 (+)
AMCG00001760 mpc1,LOC107725004,LOC106589821,LOC107693783 other downstream 4288976 15331620 ~ 15334580 (+)
AMCG00001762 NA other downstream 4389693 15432337 ~ 15439031 (+)
AMCG00001814 ryr2,LOC106456445,LOC108410403,LOC106906861,LOC101062804,LOC103129799 other downstream 5194618 16237262 ~ 16377860 (+)

Expression


Co-expression Network