AMCG00001664


Basic Information

Item Value
gene id AMCG00001664
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 11281304 ~ 11287784 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001664
ATGGATAGCTCTCACCGTGCTAACATTTTGTTAACTTCGTGTATCAAGACCCCGGTGAATCCGCAAACTAAAGCCCCAGCGGCTCTGTATGAGAGGGGCAGCGCTGTCCAGCAACACAGCCAGAGAGCCGAGCCGGCGGGCCAGATGGACAACCGGGATTACGAGGAGGAGAATGAGTACGTGTCGGATGCGTCAGAGtgtgaggagaggagagggagtcCCTTGCTGATAAAGGACTACGTGGTGGGGGCGGAGCACCTAGACCTCCATGAATTCTACTTCTCTAATGAGGAGTACTACAGAaagctggaggagctgaagaaaGCTCATTTGCAGACCATGTCAGAGCTTGAGAAGATGTATCGAAATAAACTGGATCTCAAAGGAGGGGAGCCACCTGAGAAAGACTGTGACATCTCCAAGCTGTCCAGCAGATACCAGGGGAAGAAGAGTCCGATGCCAGCAAAACAACTTCTGAGAAAATCCTTTTCAGCAAACGAGCTGATTCACACCTTTGGCTCATTTGTGTCAGATATGTCGGATGAGGATGCAGCAGGCAACTGTGCAGGGCACATTGAAAAGGGACTCCTGTCATCTCCAAAGGAGCACATTAAAAGCATGTGGGATGGCTTCTTAGTGGAAGACTATGCATCCCATAAAAGACTACAGACATGTTCCTCGGTGAAAGAGCggcagacaaaaaacaaatgcgAAGACTGGAACCCCAGGATCACTATCCCCAAGCCCTTCAACATGACAATCAGAGAAgcagaaaagaagaagaggagggtCAAGTCCAGATCCGAGATCGAGATGGAGAACTGCCTGCTCAAGAAGCAGGTCGAAGAGCTTGTGGAGTGTCAGAAGAAGTTTCGGGCCAGTCCGGTGCCCGCCCATGTCTACCTGCCTCTGTTTGAGGAGATCAATGAGCGCAATGAGGATAGGAGACAGTTCATCAGGGACAGGAACAGGGAGCTTCTGTTGGCTTCCCAGAAACCGTTCAGCTTCctggagagggaaagaaagaagaaagaaatgagGGAAGCTCAGCTCAAAGACCTCACTCccaaaatggaaaagaaagctTTCAAAGCAAAGCCAATACCAAAGTCTGTATACGACCCCACAGTGAGCGAGCGGATCCAAGAAGAACAGCTTTACCGGGCGATTAAGATGCAAATGAGGGCACAGGAGCTACTGCATAGCTCCTCCATGCCCAAAAGTATGGTGGCTCAAAGACTGGTGGGGAAAAAGAGAGACAGCCCAGTAGAAGAAGAGAGGGAACTGGAATTTCACCCAAGGATTAACACGGAGATACCTGACTTTGAGGCAAAATACAGGAAATTCAAGAAACAGCTCATGCACAAAAAGGATACCAAACCAATGACAGTTTGCGAACCTTTCCATCTTCGCACATCTGAGATCACTTCCCACAAAGATAAGATCCTGGCCGACATAGAAGCAGATGAAATCAAGTTGAAGGAGATGCGCTGGCCGTACATTGCTCCCACCAGTCCAGCCAAAGCTAGATGCTCCAGTCTCTGCTCCTCAGGAAGTGTGGAAAGTCTACCTGCCAAAATCACAGACACAGTTAAAAAGCGTCAAGACGCTGTGAGGAAATCGCTAGAACAGAGAAAAAgggcagaagaagaagaggagaaatgGAGAGCAATGCAGAGGCAAAGGGAGAGGAAACTCCAGAAACTGGTTTCAAAGCGCGCCCAGGCCAATGACCCCCACCAGGCTCTGGCCCAATCCAGCACGTCCAGACTGAAGCAGTTCAGGAAACAAGACCAGCAGAGGAGAAAGGAGTACCTGGAGGAGATGAGGGAGATTCAGGAGAGAGTGAAGGGGCGACCTCTGCTTCTGGAACAAGTAGCACAGAGGAACGCCAAGCAAGCCGTGGAGAGACGCTACGCTGAGAAACTGAAGGGGTACGGAATCAGTGAAGCATTTGTCAGCAGCAAAGCGCCAAAGGTTCAGAAACACTGTGAGGGATCCATCAGTGGAGTGTCCTTTTCCAGCGAGGATAAAGAGAGtGCTAAGGACAGTTCCCGCGCAGGGTCCAGTGCTGGGCTGGAGGAGTATCtggatgattatgaagatgtaGAAGAtaacactgatgaaaacaatgGCAAAAATGATGACAATCACCAGGGAAATGGTGAAGATAAGGGtggtgaaaaaaaagaaaccaggGAATCTAGCATTGGAAGTGATGCGGTAGATGAAGACGACCACCACAGCACAGATAAAGACAGTGATCACGAAGACTGA

Function

GO: NA

KEGG:

id description
K16772 FAM161A; protein FAM161A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001664 True 2277 mRNA 0.49 7 11281304 11287784

Neighbor

gene id symbol gene type direction distance location
AMCG00001665 cct4,LOC107700877,LOC102790717 coding upstream 816 11275284 ~ 11280488 (+)
AMCG00001663 NA coding upstream 238660 10992078 ~ 11042644 (+)
AMCG00001651 NA coding upstream 343385 10919255 ~ 10937919 (+)
AMCG00001650 peli1b,LOC107583279,LOC107583565,LOC107720901,LOC107670869,LOC107654901 coding upstream 362758 10905474 ~ 10918546 (+)
AMCG00001654 NA coding upstream 411102 10851873 ~ 10870202 (+)
AMCG00001669 LOC107715966,LOC108438731,LOC108269901,LOC107689808,LOC107744605,LOC107583557 coding downstream 22786 11310570 ~ 11325141 (+)
AMCG00001679 NA coding downstream 50583 11338367 ~ 11346415 (+)
AMCG00001678 usp34,LOC106585779 coding downstream 58775 11346559 ~ 11372681 (+)
AMCG00001677 NA coding downstream 97500 11385284 ~ 11396975 (+)
AMCG00001676 NA coding downstream 207282 11495066 ~ 11507509 (+)
G159441 NA non-coding upstream 59396 11217319 ~ 11221908 (+)
G159378 NA non-coding upstream 309214 10969401 ~ 10972090 (+)
G159377 NA non-coding upstream 312903 10967334 ~ 10968401 (+)
G159356 NA non-coding upstream 437470 10841097 ~ 10843834 (+)
G159333 NA non-coding upstream 521115 10759976 ~ 10760189 (+)
G159483 NA non-coding downstream 148878 11436662 ~ 11439612 (+)
G159594 NA non-coding downstream 337887 11625671 ~ 11647452 (+)
G159775 LOC102207824,LOC102800191,LOC107693914 non-coding downstream 1389027 12676811 ~ 12679489 (+)
G159798 NA non-coding downstream 1498011 12785795 ~ 12876686 (+)
G159800 NA non-coding downstream 1511725 12799509 ~ 12810735 (+)
AMCG00001645 NA other upstream 523446 10747489 ~ 10757858 (+)
AMCG00001643 spred2 other upstream 603450 10655187 ~ 10677854 (+)
AMCG00001630 NA other upstream 1121478 10157734 ~ 10159826 (+)
G159174 NA other upstream 1366640 9913308 ~ 9914664 (+)
G158836 NA other upstream 3119489 8159146 ~ 8161815 (+)
AMCG00001691 NA other downstream 1042195 12329979 ~ 12333700 (+)
G160026 NA other downstream 2981831 14269615 ~ 14270190 (+)
AMCG00001760 mpc1,LOC107725004,LOC106589821,LOC107693783 other downstream 4043836 15331620 ~ 15334580 (+)
AMCG00001762 NA other downstream 4144553 15432337 ~ 15439031 (+)
AMCG00001814 ryr2,LOC106456445,LOC108410403,LOC106906861,LOC101062804,LOC103129799 other downstream 4949478 16237262 ~ 16377860 (+)

Expression


Co-expression Network