AMCG00001676


Basic Information

Item Value
gene id AMCG00001676
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 11495066 ~ 11507509 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001676
ATGTTTGTAGGCTTTGCCATGTTGCCTCTGAAGGAGAAGGACAGGCCAGTGGTACAAGCTCTGCTCAAGGCGGGCTGTTGTGTGCGCTGTGTTCTCCGATTCTGCTGTGTGGAGCTGCAGTCCACATACAGACAGCCCTGCAAGGATTTGGAGAGTGAGCTGCACAGCTTTGCCCACACAGAGGAATGCACTGAAACAAATCCTGAAACCGAGGACGCGCAGGACCCTCCGTGTAAGAGACTGAAACTGGAGGGAGAAGGGCACAGTGTAGCTGACGGACAGGGAGCAGTGATTGTCCCAGGCCCGGACCCCCTTCATGCCCACAAGGATGAGTCGGAAGTGTGCGTGGTGTGTTTGGGAGTACTGCAGGACTTCTGTGACCGAGACTTTGCCAAAAAAATGGCAGATATTGTGGATTCTGCTGGCTATCAGTTCAGCAGTCTGGTGGTGTCAGTGTCTCTTCCCCCCCAGCTGTCAGTGAGAGAGCATTCTACCTGGTTACTAGTAAAGAAGGAAGTAGGgcaGAAAGGTCTTTGTCTAGGAAAGGATGATGTGATTCAAATCAAGGAGGCCTACAAATGGATAATCCACCCCCTGATCTCAGCGGAGCTGGGAGTACCTGTGGATGGCAAGGCGAGTACATCATTTCCCATCACTTCTACATTCATAGGAAGCTGCTTTGAAGTGAGCGTAGTGTTCACACATCCAGAGACGGATGGGGACTGCCATTTTCTTGCTACTGTTTGCTCTGACTGCTTCAAACCTGCTAAAAACAAACAGTCTGTTTTCACTAGAATGGCTGTGACAAAAGCATTGGAGAAGATAAAAGACAAGGATTTCCGCAACCAGTTTCCTTGCCCTCCATGCCACCCCGTTACCAAATGTATTGCCCAGGATATCAGTTGTCTTCACAGTCCAATCTTTGTTGCTGGGAGATACAACAAGTACTGCCGGACGCTGCCCCAGACGCCCTGGGTGATCGATGGCGAGAGGAAGATGGAGTCCTCTGTGGAGGAACTAATTTCAGAGCATCTGCTAGCCAACTTCAGAGCCGAAGGTTTTAATTTCTCATCTTCAGGAAGAGAGGATGTTGATGTCCGAACATTGGGGAATGGGAGGCCCTTTGCAATTGAGTTACTTAACCCACACAGGGCAAATTTCACAAAAGAGGAGATCAAACAGCTCCAGCAGGCGATCAATAAGTCCTCGGAAAAAATTAAAGTCCGGGATCTACAGATTGTAACAAGAGATGCAGTTGGTCACATGAAAGaaggggaggaggagaaaaCCAAATCCTACAGTGCTTTAATATGGTCTCAAAGACCCATTGAAAAAGAAGACATAGACTTCCTTAATGATATCAAGGACTGCAAGATCGCCCAGAAGACCCCCCTGCGTGTGCTGCACCGCCGCCCCCTGGCCGTCCGCCAGCGCCTCATCCACACCATGCAGGCGCGCTTCCTAGACCAGCACCACTTCACCCTGCACCTGAGGACGCAGGCCGGCACATATATAAAAGAGTTTGTACATGGGGATTTCGGAAGAACTAAACCAAATCTGTGCAGCCTGATGAACACAGTGACCGACATTTTGGAGCTGGATGTGGAGTCTGTGGATGTAGACTGGCCTCCAGCAATTGAAGATTAAGACGGAGAGAATCCAAGTTCCCATTTACTGTGAAGCCATGTCGTCAGCCTTGCGATAACCATGTATTTCAAGAGGACCTGGAAGGGCTGTGCTAcattgaacacatttaaatagtatatttttttatatttcttctttACGTTCAGAATGCATACTAATGGCTGAAGaactttctacattttattaaatatctgttaaaacatatttggtaaaaaaaaaagttttttttt

Function

GO:

id name namespace
GO:0009451 RNA modification biological_process

KEGG:

id description
K07583 PUS10; tRNA pseudouridine synthase 10

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001676 True 1877 mRNA 0.48 17 11495066 11507509

Neighbor

gene id symbol gene type direction distance location
AMCG00001677 NA coding upstream 98091 11385284 ~ 11396975 (+)
AMCG00001678 usp34,LOC106585779 coding upstream 122385 11346559 ~ 11372681 (+)
AMCG00001679 NA coding upstream 148651 11338367 ~ 11346415 (+)
AMCG00001669 LOC107715966,LOC108438731,LOC108269901,LOC107689808,LOC107744605,LOC107583557 coding upstream 169925 11310570 ~ 11325141 (+)
AMCG00001664 NA coding upstream 207282 11281304 ~ 11287784 (+)
AMCG00001674 bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107655449,LOC107743494,LOC107559339 coding downstream 105679 11613188 ~ 11615245 (+)
AMCG00001690 NA coding downstream 580696 12088205 ~ 12108319 (+)
AMCG00001693 LOC106911521,LOC103131642,LOC101466658,LOC103131658 coding downstream 810336 12317845 ~ 12329483 (+)
AMCG00001686 dtd1,LOC107752123,LOC102798855,LOC107551933,LOC107678219 coding downstream 827515 12335024 ~ 12348395 (+)
AMCG00001692 slc24a3,LOC106576975 coding downstream 918442 12425951 ~ 12449184 (+)
G159483 NA non-coding upstream 55454 11436662 ~ 11439612 (+)
G159441 NA non-coding upstream 273158 11217319 ~ 11221908 (+)
G159378 NA non-coding upstream 522976 10969401 ~ 10972090 (+)
G159377 NA non-coding upstream 526665 10967334 ~ 10968401 (+)
G159356 NA non-coding upstream 651232 10841097 ~ 10843834 (+)
G159594 NA non-coding downstream 118162 11625671 ~ 11647452 (+)
G159775 LOC102207824,LOC102800191,LOC107693914 non-coding downstream 1169302 12676811 ~ 12679489 (+)
G159798 NA non-coding downstream 1278286 12785795 ~ 12876686 (+)
G159800 NA non-coding downstream 1292000 12799509 ~ 12810735 (+)
G160024 NA non-coding downstream 2759879 14267388 ~ 14267722 (+)
AMCG00001645 NA other upstream 737208 10747489 ~ 10757858 (+)
AMCG00001643 spred2 other upstream 817212 10655187 ~ 10677854 (+)
AMCG00001630 NA other upstream 1335240 10157734 ~ 10159826 (+)
G159174 NA other upstream 1580402 9913308 ~ 9914664 (+)
G158836 NA other upstream 3333251 8159146 ~ 8161815 (+)
AMCG00001691 NA other downstream 822470 12329979 ~ 12333700 (+)
G160026 NA other downstream 2762106 14269615 ~ 14270190 (+)
AMCG00001760 mpc1,LOC107725004,LOC106589821,LOC107693783 other downstream 3824111 15331620 ~ 15334580 (+)
AMCG00001762 NA other downstream 3924828 15432337 ~ 15439031 (+)
AMCG00001814 ryr2,LOC106456445,LOC108410403,LOC106906861,LOC101062804,LOC103129799 other downstream 4729753 16237262 ~ 16377860 (+)

Expression


Co-expression Network