AMCG00001677


Basic Information

Item Value
gene id AMCG00001677
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 11385284 ~ 11396975 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001677
GCTGCAATAGATCTCACTATTTCAGTCCTGGATGTGAATGACAGCCCACCAGTCTTCACCAAAAGCAACTACACCACCAGTCTGAACCTGACGTCTCCTGCAAGAACCTTTGTCACTTCAGTTTCTGCTACTGACCAAGACTCGGGAAGTAATGCTGTTGTGGAGTACTACATGCTGGATGAGGATCCTGatagtaaatattttacaatcGAAGACCCGTGCAAGGGAGCTATACTGACGAAGCAGAGCCTCCCCCGGCCTGGGTCGTACAGGTTCTCTGTGGAAGCTAGAGACCGGGGCGACCCCTCCCTGAACAGCACAGCCTCCGTGTTTGTGGACGTCATAGACAATGGGATGTTCATGCCGGAGTTCAATTCCTCTGAAATCAGTGAACGTGTTGAGGAGAACACAGGGTCTGGGCACCTTGTGTACACTTTTTCTGTACTGGATACACCTGGAGTGAGTGTCATCTACAGCAttataaatggaaacaaattgGGTGAGTCTCTAACAGTTTCTGTAGCAGCCCTGTCACTGAACTGTGTTTTTACAGAAACCCTGAATTGGTCTCTCCTGTCCACAGATCATTTCCGGTTGGATGCAAGCACCGGTGAACTGTACACCACAATCAATCTGGACTTCGAGCAGCTGTCAACGTACATCATCACTATTGAGGCCATAGGATTCCCCTCTACCAAGTCTTCACCAGctGGCAAAAATATTGCAACATTGACCATTTTGGTTGAGGATGTGAACGAAGCACCTGAATTCAGCAGCCCCAGCTATTCTGCAAGGATTTTCAAAGTGTCTCCATACAAGACTCCAGTGGTGAAAGTGAAGGCCACAGATCCAGACAGCGGAGAGAAAGGACTTCTGGTGTATAGTTTGAATGAACCTAAAAGCAAGGAGTTTGATGTTGACAGCTCCACTGGGCAAGTTTATGTGGTGTCCTTAAAGAGTGGGACGTTCACTTTCCAAGTGAATGCTACTGACCTCGAGGGAAAGGGATTGTCAGCTGTAACAAGTGTGGAAGTAAGTGCCCTGAATATACTGGAGACTGAATGCATGTCAGAGGAAGGGAACCTGCAGTTTATGGAGCTGAAGGCTCTGCAACAATCAATGGGCTGGAATATACACATTATCGAGGTCAAAGGCATCAGTAATCAAACAAGATCCACAGAAAGCCAGGAAGAGACCTACATCAGTTTCATAGCCTCCAACGCGGACTACAAAATCATATCCACAGTTCAAggtagatgttttattttttatttttttaacatggttaCTGATGCTAATAATATactaaAATTACAAGCAGCAAAGGAGAAAATCAATAATGAACTCCAAGCGATATTTGGagaagatgtttatttttcagtgaaagACGGTTTTAATGAGTTTCAGCCACAGGACCAAATAGCAGGCATTGTTGTGGGTGTGTTGGTGGCCCTGGCTTTCATAAGCTTCCTCATTTATGCTTTTTTACGCAGAAAGGACAATAATTCTCAAGCAGACAGTCAGGTCGTTCAGATTTCTGACACAGACACCTCCATTTTAGTAAATATAGcTGCCAAAAATATTGCAAGATTGACCATTTTGGTTGAGGATGTGAACGAAGCACCTGAATTCAGCAACACCAGCTATTCGGCAAGGATTTTCGAAGTGTCTCCATACAAGACTCCAGTGGTGAAAGTGAAGGCCACAGATCCAGACAGCGGAGAGAAAGGACTTCTGGTGTATAGTTTGAATGAACCTAAAAGCAAGGAGTTTGATGTTGACAGCTCCACTGGGCAAGTTTATGTGGTGTCCTTAAAGAGTGGGACGTTCACTTTCCAAGTGAAGGCTACTGACCTCGAGGGAAAGGGATTGTCAGCTGTAACAAGTGTGGAA

Function

GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04976 Bile secretion
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001677 True 1893 mRNA 0.45 12 11385284 11396975

Neighbor

gene id symbol gene type direction distance location
AMCG00001678 usp34,LOC106585779 coding upstream 12603 11346559 ~ 11372681 (+)
AMCG00001679 NA coding upstream 38869 11338367 ~ 11346415 (+)
AMCG00001669 LOC107715966,LOC108438731,LOC108269901,LOC107689808,LOC107744605,LOC107583557 coding upstream 60143 11310570 ~ 11325141 (+)
AMCG00001664 NA coding upstream 97500 11281304 ~ 11287784 (+)
AMCG00001665 cct4,LOC107700877,LOC102790717 coding upstream 104796 11275284 ~ 11280488 (+)
AMCG00001676 NA coding downstream 98091 11495066 ~ 11507509 (+)
AMCG00001674 bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107655449,LOC107743494,LOC107559339 coding downstream 216213 11613188 ~ 11615245 (+)
AMCG00001690 NA coding downstream 691230 12088205 ~ 12108319 (+)
AMCG00001693 LOC106911521,LOC103131642,LOC101466658,LOC103131658 coding downstream 920870 12317845 ~ 12329483 (+)
AMCG00001686 dtd1,LOC107752123,LOC102798855,LOC107551933,LOC107678219 coding downstream 938049 12335024 ~ 12348395 (+)
G159441 NA non-coding upstream 163376 11217319 ~ 11221908 (+)
G159378 NA non-coding upstream 413194 10969401 ~ 10972090 (+)
G159377 NA non-coding upstream 416883 10967334 ~ 10968401 (+)
G159356 NA non-coding upstream 541450 10841097 ~ 10843834 (+)
G159333 NA non-coding upstream 625095 10759976 ~ 10760189 (+)
G159483 NA non-coding downstream 39687 11436662 ~ 11439612 (+)
G159594 NA non-coding downstream 228696 11625671 ~ 11647452 (+)
G159775 LOC102207824,LOC102800191,LOC107693914 non-coding downstream 1279836 12676811 ~ 12679489 (+)
G159798 NA non-coding downstream 1388820 12785795 ~ 12876686 (+)
G159800 NA non-coding downstream 1402534 12799509 ~ 12810735 (+)
AMCG00001645 NA other upstream 627426 10747489 ~ 10757858 (+)
AMCG00001643 spred2 other upstream 707430 10655187 ~ 10677854 (+)
AMCG00001630 NA other upstream 1225458 10157734 ~ 10159826 (+)
G159174 NA other upstream 1470620 9913308 ~ 9914664 (+)
G158836 NA other upstream 3223469 8159146 ~ 8161815 (+)
AMCG00001691 NA other downstream 933004 12329979 ~ 12333700 (+)
G160026 NA other downstream 2872640 14269615 ~ 14270190 (+)
AMCG00001760 mpc1,LOC107725004,LOC106589821,LOC107693783 other downstream 3934645 15331620 ~ 15334580 (+)
AMCG00001762 NA other downstream 4035362 15432337 ~ 15439031 (+)
AMCG00001814 ryr2,LOC106456445,LOC108410403,LOC106906861,LOC101062804,LOC103129799 other downstream 4840287 16237262 ~ 16377860 (+)

Expression


Co-expression Network