AMCG00001679


Basic Information

Item Value
gene id AMCG00001679
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 11338367 ~ 11346415 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001679
ATGTTGtacttcttttcattttctgtagtaTCTGATGCAGACAGCACCGATGGCTTACAACTGAAAAAGGAGTATGCTCTTAGGATTTTTAGTTACATCAATTCTTGGACCCAAAGGCAGTGTCTTTGTTGCTTTAAGGAGTACAAGCACCTTGAGGTTTTTAATCAGGTGGTCTACGCAGTCATAAACTTGGTGATCAACCAGGTCCAGACCCTCCGGGACCAGCTTTGTAAAACTTGCACTAATAGCGCCGAGCCAGACTGGGCAGGCGGGACTCAGCAGAGCGGCGATGAGACGGTCAACGTGGAGAGAGACTCCAACGAAGAGGATGGGGAGAGTCAGGGGCCCGACCCCGAGGAGAGCAAGCCTGAGTGCTCCAAGACTGCGGAGGACAGTTCCCCCAAGAATCTCGATCCCTTCAGCTCCTGGAGCACCGAGGAGAGGGAGAAGCTGCTGCTGTGCGCGGCCAAGATCTTCCAGATCCAATTCCCTCTGTACACGGCTTACAAACACAACACTCATCCCACCATAGAGgATATTTCAGCTCAAGAAAGCAATATACTAGGATCGTTTTGTGATATGAATGAGTTACGGCAGAGTGCGGCTCGCAACATGGCAGATTTAATGTGGAGTACAGTGAAGGAGCCTTTGGACACGGCTTTGTGTTTTGACAAAGAAAGCCTGGATCTTGCTTTCAAGTACTTTATGTCTCCAACTCTAACGATGCGTTTGGCAGGTCTGAGCCAAATAACAAATCAGCTTCACACGTTTAATGATGTTTGTAATAATGAATCCTTGGTGTCTGACACTGAAACGTCAATAGCAAAGGAACTTGCAGATTGGCTCATCAATAACAATGTGGTAGAGCATATCTTTGGACCAAATTTGCACATTGAGcTAAAGCACTGCAGTCGGTACATACACGACTTGTTTCCTTCCTTGATCAAGAACCTGGACCCGGTGCCGTTACGTCATGTTCTTAATCTGGTCTCTGCACTTCACCCCAGTGCCCACACTGAGCAGACCCTGTACTTGGCTTCAATGCTCATTAAAGCCCTTTGGAATAACGCTCTGGCTGCTAAAGCTCAGCTGTCCAAGCAGAGCTCCTTCGCTTCCCTGCTGAATACCAACCTCCCGatgggaaataaaaaagGCTCCCCAGCTGCTAGTCCTGAGAGTAGCGACAACAGTGACACCCATCACAGCGGAGGCAGTGACATTGAGATGGATGAGCAGATCATGAACAGCTCAAAGCGCGTGCAGCAGAGGCTCTCGGACACAGAGGAGTCAATGCAGGGCAGCTCTGACGAGACGGCAAACAGCGGAGAAGATGCCAGCAGTGGGCCTGGCAGCAGCAGTGGGCGCAGCGACGGCTCCAGCAATGAGGTGAACTCCAGTCACGCCAGCCAGTCGGCTGGGAGCCCCGGCAGTGAGGTTCATTCGGAGGACATGGCTGACAGTGAGGCCCtgaaggaggatgaggaggaggaggaggaggaggaagacgaggaggaggaggaggacacgGGGGCGGCAGAGAGGGGCTGCAGTCCTCAGAAGGAGGTCAGGAACCCTGAGCTGCGGAAGAGGAAGTCCGAGTCGCAGGCTGGCATCGGTCTGGGGGAGGCTCCGGGCCCTGCGGAGCGGCCGGGCAGCAGCAGCGGGACAGTCAAGGATCTCCCCTTCAACCCCGAGGCAGTGTCCTCCGTGGACAGCCGCATGAGGATCCTGGATGCCTGCTCCACACACCCGGAGGACCAGGATCATGACATGCAGGGGGAGATGGGCCCCGCACAAATGTCGCAGGGCCCCCAAGATCCCTGCCTCACGAGAACGGGAGACTTCCTGGGAGAGGCCATCGGCAGTGAGCTGTTCAACTGCAGGCGTTTCATTGGGCCCCagcaccaccatcaccaccaccaccaccaccatcaccaccaccaccaccaccacgagGGGTACATGTCTGTTCTGTCACCCTTCACCATGGGGGAATAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001679 True 1998 mRNA 0.54 10 11338367 11346415

Neighbor

gene id symbol gene type direction distance location
AMCG00001669 LOC107715966,LOC108438731,LOC108269901,LOC107689808,LOC107744605,LOC107583557 coding upstream 13226 11310570 ~ 11325141 (+)
AMCG00001664 NA coding upstream 50583 11281304 ~ 11287784 (+)
AMCG00001665 cct4,LOC107700877,LOC102790717 coding upstream 57879 11275284 ~ 11280488 (+)
AMCG00001663 NA coding upstream 295723 10992078 ~ 11042644 (+)
AMCG00001651 NA coding upstream 400448 10919255 ~ 10937919 (+)
AMCG00001678 usp34,LOC106585779 coding downstream 144 11346559 ~ 11372681 (+)
AMCG00001677 NA coding downstream 38869 11385284 ~ 11396975 (+)
AMCG00001676 NA coding downstream 148651 11495066 ~ 11507509 (+)
AMCG00001674 bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107655449,LOC107743494,LOC107559339 coding downstream 266773 11613188 ~ 11615245 (+)
AMCG00001690 NA coding downstream 741790 12088205 ~ 12108319 (+)
G159441 NA non-coding upstream 116459 11217319 ~ 11221908 (+)
G159378 NA non-coding upstream 366277 10969401 ~ 10972090 (+)
G159377 NA non-coding upstream 369966 10967334 ~ 10968401 (+)
G159356 NA non-coding upstream 494533 10841097 ~ 10843834 (+)
G159333 NA non-coding upstream 578178 10759976 ~ 10760189 (+)
G159483 NA non-coding downstream 90247 11436662 ~ 11439612 (+)
G159594 NA non-coding downstream 279256 11625671 ~ 11647452 (+)
G159775 LOC102207824,LOC102800191,LOC107693914 non-coding downstream 1330396 12676811 ~ 12679489 (+)
G159798 NA non-coding downstream 1439380 12785795 ~ 12876686 (+)
G159800 NA non-coding downstream 1453094 12799509 ~ 12810735 (+)
AMCG00001645 NA other upstream 580509 10747489 ~ 10757858 (+)
AMCG00001643 spred2 other upstream 660513 10655187 ~ 10677854 (+)
AMCG00001630 NA other upstream 1178541 10157734 ~ 10159826 (+)
G159174 NA other upstream 1423703 9913308 ~ 9914664 (+)
G158836 NA other upstream 3176552 8159146 ~ 8161815 (+)
AMCG00001691 NA other downstream 983564 12329979 ~ 12333700 (+)
G160026 NA other downstream 2923200 14269615 ~ 14270190 (+)
AMCG00001760 mpc1,LOC107725004,LOC106589821,LOC107693783 other downstream 3985205 15331620 ~ 15334580 (+)
AMCG00001762 NA other downstream 4085922 15432337 ~ 15439031 (+)
AMCG00001814 ryr2,LOC106456445,LOC108410403,LOC106906861,LOC101062804,LOC103129799 other downstream 4890847 16237262 ~ 16377860 (+)

Expression


Co-expression Network