AMCG00001686 (dtd1,LOC107752123,LOC102798855,LOC107551933,LOC107678219)


Basic Information

Item Value
gene id AMCG00001686
gene name dtd1,LOC107752123,LOC102798855,LOC107551933,LOC107678219
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 12335024 ~ 12348395 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001686
GCTTTCATCCCCGACGCTTTTCCGCAGTGCTGTGGCATTGTCTGACAATGAAAGCCATCATCCAGAGGGTGTCTAAAGCCAGTGTGACAGttGGTGAGGAACAAATCAGTGCCATAGGCAAAGGTATTTGTGTGCTACTAGGGATATCAGTAGAAGATACTCAGAAGGATGTGGAATATATGGTTCGTAAGATTCTTAACTTGCGCTTGTTTGAGGATGAGAACGGGAAGCACTGGAGTAAAAGTGTGATGGATAAACAGTACGAGGTGCTGTGTGTGAGCCAGTTCACACTGCAGTGCATCCTAAAGGGGAACAAGCCGGACTATCACTCGGCCATGCCTGCTGAACACTCCCAGCCTTTCTACAACGACTTCCTAGAGCACATGAGGAAGGCCTACAAGCCCGAACTGATAAAAGATGGGAAGTTTGGAGCCTACATGCAAGTCCATATTCAGAACGACGGTCCTGTTACTATTGAGCTGGAATCCCCTGCTGGTCCCATCGACCCAAAGCAGCAGTCAAAGCTTGACAAACAGCAGCGCAAAGAGAAGATGCGAGCCAAGGGGCCCTCGGAGTCCAGCAAAGAAAAAGCCGCATCACGTTCCAAAGTGGACCCCAGCGCCAGCAGTGGAGCCGAGGGAGATGTCTCTTCGGAGCGGGAGCCGTAAACAGTGGAGTGATGCTGTTGTTTGGAATTGATGAACACCACAAAATCCCCAGAAGACTTGATCTTCATTGACCTCAAAACATCATCTTGGACACTGAGCACAGTGTCCCGGGGAACGAGCTCTCAAACTGACATTGACATTAAACCAAAGGACTCCACCGCCTTGTGTTTCTCTGAGAAGtccatttgaaataaaaaggtgggaactgaggggaaaaaaaactggaacaaaTTTGATCGTGGCAGGACAATGTTCCAACCTGCATTCATTTTGACCTGTGCTGTTCCATATAAACTTGTgcagaaaaaacattgttacacgtgaaatgtgtgtgttgaatGTTGAAGGCAGATTCTGATTTAAGATTACAATACAATCATTAAAAAGTAGTCATTTTGTAAAGTTCAACTGCCTATATTATCTACTGCCGCCTGCATGACTCACAAATATTAATTGCTGTATGTTCAGTCTGAAacaatctgaatacatttgaaatgtctaGAAGGACAGAATCTGCCCACCTGACCTTTTCCTACAGCTCTTTTCAGCATACCAGGAACATGGGGGGTAGGATAATAGGCTGTACATATAATAGCTGGAAATCAACTTTATATGTGACTTTAGGTTTTCCTACTAGAAAAGAGAAGAGGACCTAAGTTACATTcatcaatttaaattcaaaagtCTACCTGTGTATTGAATAGAATTTGCCTGTCTAttaatttgttgcattttgatAAACATAATATTTGCATCAGTTCTGAAGtctattcattgtttttaagtataaaatttaagttagaaaataaaatgctgcagaTTGTGTAGACCTTATCGAGATTAAGTAGGAAACCAGCAGATTCTCCTAATTCTTTAGGCTGAATTATTAGGAAGAGATGTAATTATTAgtatattatttcattatattaacAAAAGTACAGTGGCAAAATATCAAAGAAAGCTGTTCACTGTGTATTTAACAGTGTGGAGGTTCAGCCTTGGATCAGTGAGCCCTCGGTTGCACAAGAAGGTTCACTTTCCACTCTCATCTCGTGGCCAGAGAAATACTGTGCTGCTCTGCCTACTGCATACAGAGATATTGGTGTCTGCAGTTCTTTCCTGATGCACCAGTCCATTTAATCACACGTGTGTTTGATAGGATTGTGAGCAGGCCATGACATGCTTTGTAGGTTTCTCTGCTTAAATGAATCCCATCTTTTGTGAAGTGGGGGGTTATCATGTTGAGGGATATACATTGTTTGTTGTAGCTGTTGTATCATCTCGGTTCAATTCCTTATATGCAGTTGACCCATTTGCAGACACAGCTGTGCATTGGCTGATGTCCTTTGTGATGGTTGTATGGTTGGTCTTCACCACATAATTCTCTGTTTGGCATACCTGTTTCAACATAATTTCCCCTCTGCTTAATCCCAAATCTTCTCTGGCATGCATTCTAGAGCTCCACTTCTGTACAGAAATCTACATGGTGGTTGTGATATGGCAACCAATCACTGTTCTGTGCTGATATGTGGCCAACTCAAACAATGTCTCATACTGGCAGGAACTGGCTGACAGGATGAAGGTTGTCTATGGAATACCAAACATAGCAAATTACCTCTGCTACAATATCTTACCAGTAGACAGAGGTGTGTCCTATATAATTGTTAATATAGTCTATTTCAAAtcctgggaaaaaaataaagtggatACAACAGGGgatctgaagtttttttttccttttataaattaatctgtAATAAAGAGTCATGTTTTAAGAACACATGTTGCATTTACTCTTGAATATACCTCTGATAAAAGGCTACTCACAGCATCATTTAATGCATGTGGTTATGCAGTTAAATTTAACATCCATTTATTGCACTGGTGGCCAGTGCTGGTCCTAAAGAATCTCTAATTTCATTGGTCATCCTAAATAATTTGTTGAAAGCTTGGAGCACTTTATTGGTTTATCTAATTTTGAtattaattggttaatttaaGGGTGGAATGTGGGATCGGAAGGTTACAggcttttcacattttcaaattagatCTGGAGAAACTGGGTTTTTATCTAGtcataatgtttgttttttatgaccTATCTAAGAAGGTGTATCAGGTTGGGACCATCTGAATTCACTGAATAAGAGCTTTGccattaaagaaatgtaaaataagtacAGAATAATTTAACATCACAGAGCTATATTATCAAGGTGTACTGGCATGTACAAGGTAATCAAAAGGGCATTTTTAGAAAACTGGCATGTTGGAATGTTATAGATTTTGTGACATTGGTTGG

Function

symbol description
dtd1 Enables Gly-tRNA(Ala) hydrolase activity. Predicted to be involved in tRNA metabolic process. Predicted to be active in cytoplasm. Orthologous to human DTD1 (D-aminoacyl-tRNA deacylase 1).

NR:

description
PREDICTED: D-tyrosyl-tRNA(Tyr) deacylase 1

GO:

id name namespace
GO:0019478 D-amino acid catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0016788 hydrolase activity, acting on ester bonds molecular_function

KEGG:

id description
K07560 dtd, DTD; D-aminoacyl-tRNA deacylase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001686 True 2973 mRNA 0.40 6 12335024 12348395

Neighbor

gene id symbol gene type direction distance location
AMCG00001693 LOC106911521,LOC103131642,LOC101466658,LOC103131658 coding upstream 5541 12317845 ~ 12329483 (+)
AMCG00001690 NA coding upstream 226705 12088205 ~ 12108319 (+)
AMCG00001674 bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107655449,LOC107743494,LOC107559339 coding upstream 719779 11613188 ~ 11615245 (+)
AMCG00001676 NA coding upstream 827515 11495066 ~ 11507509 (+)
AMCG00001677 NA coding upstream 938049 11385284 ~ 11396975 (+)
AMCG00001692 slc24a3,LOC106576975 coding downstream 77556 12425951 ~ 12449184 (+)
AMCG00001687 NA coding downstream 126793 12475188 ~ 12503194 (+)
AMCG00001688 NA coding downstream 159883 12508278 ~ 12515505 (+)
AMCG00001689 LOC102208791,LOC101485550,LOC101166076,LOC107375892,LOC105023253,LOC107098978,LOC103476462 coding downstream 168617 12517012 ~ 12520705 (+)
AMCG00001695 NA coding downstream 173094 12521489 ~ 12526395 (+)
G159594 NA non-coding upstream 687572 11625671 ~ 11647452 (+)
G159483 NA non-coding upstream 895412 11436662 ~ 11439612 (+)
G159441 NA non-coding upstream 1113116 11217319 ~ 11221908 (+)
G159378 NA non-coding upstream 1362934 10969401 ~ 10972090 (+)
G159377 NA non-coding upstream 1366623 10967334 ~ 10968401 (+)
G159775 LOC102207824,LOC102800191,LOC107693914 non-coding downstream 328416 12676811 ~ 12679489 (+)
G159798 NA non-coding downstream 437400 12785795 ~ 12876686 (+)
G159800 NA non-coding downstream 451114 12799509 ~ 12810735 (+)
G160024 NA non-coding downstream 1918993 14267388 ~ 14267722 (+)
G160036 NA non-coding downstream 1957630 14306025 ~ 14306260 (+)
AMCG00001691 NA other upstream 1324 12329979 ~ 12333700 (+)
AMCG00001645 NA other upstream 1577166 10747489 ~ 10757858 (+)
AMCG00001643 spred2 other upstream 1657170 10655187 ~ 10677854 (+)
AMCG00001630 NA other upstream 2175198 10157734 ~ 10159826 (+)
G159174 NA other upstream 2420360 9913308 ~ 9914664 (+)
G160026 NA other downstream 1921220 14269615 ~ 14270190 (+)
AMCG00001760 mpc1,LOC107725004,LOC106589821,LOC107693783 other downstream 2983225 15331620 ~ 15334580 (+)
AMCG00001762 NA other downstream 3083942 15432337 ~ 15439031 (+)
AMCG00001814 ryr2,LOC106456445,LOC108410403,LOC106906861,LOC101062804,LOC103129799 other downstream 3888867 16237262 ~ 16377860 (+)
AMCG00001841 NA other downstream 4831199 17179594 ~ 17182601 (+)

Expression


Co-expression Network