AMCG00001687


Basic Information

Item Value
gene id AMCG00001687
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 12475188 ~ 12503194 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001687
AGGGCTTTGGGGGGTGAGAGAGCCTTCACAGACACCGCGAGGGCAGGATGGCGAGCACGCTGGTGCAACCCTGTCTGCTGGATCGGACAGGAAGCTTTTTCAAGTTGATTGATACGTTTGCCTCAGAAATCGGAGAGCTGAAGCAAGAGATGGTACAGACGGTCTTATCTGACAGGGATCCCGACAACTCGGATATGCAGGGCATAGAGGAAGACCTCAGCAGCCTATATCTCCAGGACTCCACAGGCAGTGCCAGAGACTCGGGCTACGACTCCCTGAAGAGAAAGATCAGTATCCTGGACCGCTTGATCAAGACCCACCCGGTGTGGCTCCTTCTGCAGCTCAACGATGAAGAGGCCATGCGGATCCTAAAGCACCAGCCGCCTGGGattttcCTCGTGAGAAAATCGACAAAGCTACAGAAGAAGGTTATTTCCCTGCGCCTTGATAGTGAGCTTGGGCCTCCTGTCAAAGACTTTCCTGTGAAAGAGAGTCAATACActttttctGTAGAAGGATCTGGAATTAGTTTTGCGGATTTGTTTAGACTTGTCGctttctactgcatcagcagGGATGTACTGCCATTCACCTTGAGACTTCCTGAGGCAATCGCAGCAGCTAAGACCCAGACGGATCTTGAAGAAGTAGCTCAGATGGGAGTTGAGTTCTGGGACTCCCCAGCACACAACCAACAGAAAACCCCTCCACTTTCTCAGCCCTGGCCATCAGACGGTGGGCGCAGACTGCAGAGGCAGCAGCGGGTCTCTCCCTCAGACTGCCTGCCTTCCCTTCAGACTCGCACACCCTCGGAGCTGGAATGCAGCCAGACTAACGGGGCCCTCTGCTTCGTTAACCCTCTCTTTCTAGAAGTGCATCGGCAGGAAGGAACCAGCGGGGGCTCGCTCAAGCGCCCCAAAACCCGAGATCCTGCTCCTTCCAGCAAGACTCGATCCCCCCCGCCCAGACCACCGCCACctaaaacacagagaaagccTCCTGTGAAGCAGGTGAGCATGCCCGAGACTGTCAGTTGGGTGAGAAAGCAGGACGAAGACCACGCCATGGGGAGCAAGCTGAACACCTCCAAGAAAAACAGCATGCCTATCCCTCCACCCCGAGTAAAGAAACAACTGAGCATGACTGACATGGAAAGAAGAAGGAATACTGCGCTGGATGACCAGATAATCCAGGAGGCCCTGACCCGAAGCCTGGCAAAATGTCCAAGACTAGGCACCAGCCCCAGCACAAACTCGCCGCCCCCCTCGCAGGACGCTGGGCAGGAGCGACAGAGTAAGAACGGCCGGCAGAGGCTGAGTGACATGAGCATCTCTACATCCTCCTCCGACTCGCTGGACTTCGACCGCAGCTTCGCCCTGCCCGACGGACCATCGGGGGCCGGCGACAGTAGCCTGGAGGAGGAGTATGGGGCCGAGAGCGACCAGGACATCAGCCCCCCGCCGCTCAAGACAAAGAAGAGGCACGGCACCACCTTCGTCCTACCCCGCGCCCTCAAGGGTCACCTGCGCAAGGTCAGCGGTGTCTTCAACTCCTTCATGACCCCCGAGAAGCGCATGGTGAGGAAGATCGCCGAGCTCTCCAAGGACAAGCGCACTTACTTTGGCTGCCTGGTGCAGGACTACATCAGCTTCCTGCAGGAGAACAAGGGCTGCCACGTCTCGGGGCTTGACATGCTGCAGACCATCCGCCAGTTCATGACCCAAAAAGCCATGCACAAGTGCATCCTGAAGCCCCTGAAGAGCCACATAGAGGCCAGCATGAAGGACTTCCAGATCACCAGTGGTTCGTGGAAGCAGCTGCGGGAGAACCTCGCCCTGGTCAAACAGAAGAAGCCCCAGGACCTGGGGGTGGACGCGGCCGCCCCAGACTCGGTGGTCATCGAGAAGATCCGCCACAAGTTCGACAACATGCGCAAGATGTACTCCCCAGAGAAGAAGGTCACGCTCCTGCTGAGGGTGTGCAAGCTCATCTACACTGTCATGGAGGACAGCTCAGGGAGGATGTACGGGGCTGATGACTTCCTTCCAATGCTGACGTACGTCTTGGCACAGTGTGACATGCCAGAGCTGGACACTGAGATTGAGTATATGATGGAGCTGCTGGACCCGTCACTTCTACATGGAGAAGGTGGTTATTACCTGACCAGCGCGTATGGAGCTATGTCTCTGATCAAAAACTTCCAGGAGGAGCAGGCGGCGCGGATCCTGAGCTCGGAGACGAGGAACACCCTACATCAGTGGCACCGGCGCCGCACCACCCAGCGTATCGCCCCTTCGGTGGACGACTTCCAGAATTACCTGAGGGTAGCCTTCCACGAAGTGAACAGTGGCTGCACAGCCAAAACCCTAATGGTGAGGCCCTACTCGACCACCGAGGAGGTGTGCCAGCTCTGTGCAGAGAAGTTCAAAGTTCAAGACCCTGAGAACTACACCCTCTTTCTCATCACAGAGGAGACCAGCCAGCAGCTGGCTCTAGACACCTACCCACAGAAGATCAAGGCTGAGATTCACAGCAGGCCCAACTCCCAGCCCTTCCATTTTGTCTACAAACGCCCCACCAACCTCAACATCTGCCTCCCGTCTGACGAGGAAAACGGAAACTGTCTTCCGAACTGAAACAACAAAGAGATCTTGGGAAGAGATCAGCACTTCTCAAGCTACATCTTTGCTTTGATGTTAAACTGTTAAGAGCTACACCTCCTTACgcttttgtatttttggagCTGCAGCCAGCTGACAAATGAATTGGGCATCAGGACTACTACAAGGAGGGAGTATCTTCAAGCCTCTGCTTTGAAACATTTGGATATTACGCGTGAACTTGCACTTTATgtcaaacagaaaaataaataaataaaagagatgCGGACACGTTACTACATAGGGTATTCAAGCAAGAGACCTCCAGTAACTTAACCTTTCAACTCAAATGGGGTTGTGCTGTATCAGTAGCCAACACCTTATTGGTTGTTGTACTTGTGACATTAGCAGAAGGCAGGCATCACACTGACACGGGTGTTGTGTATCAGGACGCTATCATATCGCTCAGTCAAACTTCCATTGACTTAAGTGGAACAGTTTTCTTAACAGATCTCAATAAAGAGAAATATTGTGTTCTAGGTTCTATGCTCTCTCTTTACTGTATCAGATTGTTAACGCAATCCCCTCCGCATGTGAACAGACCTCCTGCCGTGCCTTTCTAGATGGGTTCTATCCGTCTGCAAGACTGTAATGAAAAACTGACtgtgtcatttttttcattggAAAACATCACccttttgtatatgtatataagtatatattttttttatttagattcatgtttgtgttgcagTTGCAGGTAAACTGCGGGTTATGGGTTTTTAAGTCTTTATATAAATTGTTGGAATATTTCACATGTAATTAGTTTTGTCTTAGTGAGAACCCCTTATGAACCAGACATTGCtgagaattattattatctgagATAATGAATAATACTCATGTGCAAGATACTGAAGCCTActtaacaattacatttcaaaataaatttaaaatgtataaaaaataccTAGGTTCagacttttgcattttttgtgtgaaatgtattttcccaaATTCAATGTTGATGCATCAGTCTGGATTCCTTACACCTTGCGGAAGGTTAGAGGAAAATATGGAAGTACATCTGTAAGTGAATTGGCCAACCATATGTATTGTGTGTAGAAGCCACAACAATACAGGACCCCTTGACTTCACctgataacattttattttaaggataaCACGGGTGCAAACCTGTCCAAGTGGTTATATAACAATATGCAAACACAACCCAGGGTATTGCTCACCTGGGAAACCTGGTTCCTAAAGGGTTCAAGTTAACTCTCTTGCAGGTCTTAGAGTTAATAAGGCAGTGCCACAAAGTCTTGGTGTTATGGGTTTTCAGGAACAAGCTTTCTAAAAAGAATTTGTATCTTTTATATATGGAGCACAAACTCAATCTCCATACAAACACTGGCCTCTTGGGCAACTCTTTCAATTGCCAGATGTTCCTCAGCAGGGTGTTTTCCTCAAAGCGACTGATGTGAAGAAAGGTCAGTTAAGTGGGTGATGAAAAAGTGAAGGGGTTATGAAGAGTAGTATTCTGCTTAAAAGATTgacattcaaattattattattcaatctCTGACATAATTCAGGGTGTTGGaagcagtatttttttattctggtgACTGTATCCCAAATCAAGATCTAAAAAGCAACTGCTGAAATCACACATGACTCGACATGTATTAGAGAGCCTACAGCCATACATCAGGTTCATTTTGAGTGTTGCCAATTGAAACCACAATGTAAACTGGTCTAATGCAGGATATTGATTAGGCTGTAAGATGCGATTTCTCTTTtgacttaattaaatatttgaacataaacagaacattcaaaaacaccataacaaattaataaaacatgatccCGCTGTATTTATGCCACAAATACttctattcatttaatttatgtaaaagCAGATGTTGTGACTATGTTCAGTTGCATGTAAGCAGGTTCAGAAAGATTTATGAATGGATATTGTTTGAAAAGGCCGTGGTTTGGAAACTTGTAAGAATGAGAGAGGGAAATAGCCATTGTTATGTCAATAAACATTGTTAGAAACACTAAGCTTTTAGATGTATTTACGGTTAAAACATATTGAAGCACCTATTCGATATTTGATAGGTGTGTAGACAGACGACTaggatttatacatttgtattgtaggTTTTAGTGCTGTACttactgtcattttaatataatgaaatgtgtataagttttatatttatatatcatctGTGCAGGATTTTTCACAGATCACTTGTAATTTGTTATACACCTCAATGTAATGcgtgaaaatgtacttttccaCCAAAACGACAAGCTGTGTACTGGTCGTTTTTATATTCTGATGCCTTCCTGAAAACCCTCATTGTGGTTTTTACATACCCTGTAATGATTACATTTTGCACA

Function

GO: NA

KEGG:

id description
K23687 RIN2_3; Ras and Rab interactor 2/3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001687 True 5024 mRNA 0.47 11 12475188 12503194

Neighbor

gene id symbol gene type direction distance location
AMCG00001692 slc24a3,LOC106576975 coding upstream 26004 12425951 ~ 12449184 (+)
AMCG00001686 dtd1,LOC107752123,LOC102798855,LOC107551933,LOC107678219 coding upstream 126793 12335024 ~ 12348395 (+)
AMCG00001693 LOC106911521,LOC103131642,LOC101466658,LOC103131658 coding upstream 145705 12317845 ~ 12329483 (+)
AMCG00001690 NA coding upstream 366869 12088205 ~ 12108319 (+)
AMCG00001674 bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107655449,LOC107743494,LOC107559339 coding upstream 859943 11613188 ~ 11615245 (+)
AMCG00001688 NA coding downstream 5084 12508278 ~ 12515505 (+)
AMCG00001689 LOC102208791,LOC101485550,LOC101166076,LOC107375892,LOC105023253,LOC107098978,LOC103476462 coding downstream 13818 12517012 ~ 12520705 (+)
AMCG00001695 NA coding downstream 18295 12521489 ~ 12526395 (+)
AMCG00001698 NA coding downstream 283888 12787082 ~ 12792831 (+)
AMCG00001699 b3gat2 coding downstream 340970 12844164 ~ 12852723 (+)
G159594 NA non-coding upstream 827736 11625671 ~ 11647452 (+)
G159483 NA non-coding upstream 1035576 11436662 ~ 11439612 (+)
G159441 NA non-coding upstream 1253280 11217319 ~ 11221908 (+)
G159378 NA non-coding upstream 1503098 10969401 ~ 10972090 (+)
G159377 NA non-coding upstream 1506787 10967334 ~ 10968401 (+)
G159775 LOC102207824,LOC102800191,LOC107693914 non-coding downstream 173617 12676811 ~ 12679489 (+)
G159798 NA non-coding downstream 282601 12785795 ~ 12876686 (+)
G159800 NA non-coding downstream 296315 12799509 ~ 12810735 (+)
G160024 NA non-coding downstream 1764194 14267388 ~ 14267722 (+)
G160036 NA non-coding downstream 1802831 14306025 ~ 14306260 (+)
AMCG00001691 NA other upstream 141488 12329979 ~ 12333700 (+)
AMCG00001645 NA other upstream 1717330 10747489 ~ 10757858 (+)
AMCG00001643 spred2 other upstream 1797334 10655187 ~ 10677854 (+)
AMCG00001630 NA other upstream 2315362 10157734 ~ 10159826 (+)
G159174 NA other upstream 2560524 9913308 ~ 9914664 (+)
G160026 NA other downstream 1766421 14269615 ~ 14270190 (+)
AMCG00001760 mpc1,LOC107725004,LOC106589821,LOC107693783 other downstream 2828426 15331620 ~ 15334580 (+)
AMCG00001762 NA other downstream 2929143 15432337 ~ 15439031 (+)
AMCG00001814 ryr2,LOC106456445,LOC108410403,LOC106906861,LOC101062804,LOC103129799 other downstream 3734068 16237262 ~ 16377860 (+)
AMCG00001841 NA other downstream 4676400 17179594 ~ 17182601 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_10958668_10973745 RIN2 coding CI01000012 null 10958334 ~ 10973745 (-)