AMCG00001688


Basic Information

Item Value
gene id AMCG00001688
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 12508278 ~ 12515505 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001688
CACTTCCTGGTAAACAGCTGCTAGTGTCGGCGGGCTCCAGCTGTGCACCAAAAGTCGGTTTTTTTCACTGAATGAAGTGGttacatattgtttttgcaaaagAACATGATTTATTCTGGATCAGAAAGTGAGACGGACGACAATGAACACCCTTTGTTGCACAGGAAGCCGCTTGTCAAAGTTGAAAAGGCGCCAGTCTGCTGCTCATCCCGTTATGGCCTGGCCCTGCTGTCCTGCTATGGGTTTTTTGTGGCCTACGCACTGAGGGTCAACCTGAGCGTAGCCATGGTGGACATGCTGTCCAACAACGACAACGCCACCATTAACTCCAGCTCTCAGATCTGCCCTGCTCATGGAGGGTCCTTGCCACCTCTCCACAACAAGACGGCGAAGGTGTACGACTGGGACTCTGAAACTCAGGGCTGGATCCTGGGCTCTTTCTTCTACGGATACATTTTCACTCAGATTCCTGGAGGATACCTCGCCAGGAAATATGGAGCAAAGTGGTTCCTTGGAATTGGCATCCTGGGAACTGCCATATTTACGCTGCTTACCCCTCTGGCTGCTGATATGGGGGCAGGATACCTCATTGCGTTACGGGTTCTAGAGGGCATCGGTGAgGGAGTGACTTTTCCAGCAATGCACGCAATGTGGTCCGCGTGGGCTCCACCTTTGGAGAGAAGCAAACTCCTCACTATTTCATATACGGgtgCACAGCTGGGAACAGTAGTTTCACTTCCTATATCTGGATTAATTTGTTATCATCTGGACTGGAcctatgtgttttatatatttgGAGCAGTGGGGGTGTGCTGGTTCATATTGTGGATGTTGTTAGTCAGCAACACACCAGAGACGCACCAAAGAATATCTGTCAAAGAGAAGGAGTACATCACATCATCCTTAAAGAAAGAGTTATCTTCCTCATCTAAGCACATTCCCTGGAAGGCTATCCTGAAGTCTCTCCCACTATGGGCCATTGTTGTGGCCCATTTTTCTTACAACTGGACTTTTTACACTCTGCTTACATTACTGCCCACCTACATGAAAAATGTTCTCGGATTCAATATACAGCAGAATGGCTTTTTGTCTGCGCTGCCATATCTGGGCTGTTGGCTGCTGGCTCTTATGGGTGGACAGTTAGCGGATTACCTTAGAGAAACATTGCTGATTCCCACTGTGAAAGTCCGCAAATGTTTCAGTTTGATTGGAATGATTGGTCCGGCTGTGTTTCTGGTGTCTGCAGGGTATACAGGCTGTAATTATGTTTTGGCAGTGTCTTTTCTGAGCATCTCATCTGCTTTAGGAGGCATCTCTGCGTCAGGCTTTAGCATCAATCACCTGGATATTGCCCCATCTTATGCAGGAATTCTACTAGGAATCACCAACACATTTGCTACTATCCCTGGGATGGTGGGACCAGTAGTAGCAAGGGCCCTTACCCATTCTAACACTATTGAAGAGTGGCAAACTGTCTTCTACATTTCTGCTGCCATCAATGTTTTTGGTGCAGTGTTTTTTACAATCTTTGGTAAAGGAGTAGTGCAGGATTGGGCAGTTCCAGATCTCCATTCACATGGACACTAAGTTCTCTGACACCCAAGCCTGCAGACTGAAGCACTTGTACTGTAATCATGTGTCCCGGATGGACTGTTCTGCAGTGGGAATTGCTTTGCAGTCTTATATGGCCTTTCTCAATCCTGgctgcaaaaaatatttaattgtacatcTAATCCCATTTGAACAATATTACTCAGTCAGTGTTATATATCCCAGAATTGGGCATAGCTGACTGAAATGAAGACCTAGTTGGTTAAAAGTTGCCAATGTTGGAAGAATAGATTGTTCTATTTTTGTTGAAtccatttgcatttcttttactTATCATGTTTATGAATTATGTAActgtaattcagtttaatttcctcGTATAAATATGCCAGTCAAAAATCTCTGTAGAACAATGGTAAGTTTGTTGCACTGCGGTATTTTACAAAACACGTTTTGTAGTCAAGAAAGCACACGTGACTGCATGATTCTCCAAAATTAGACGAGCAATATTCCCTtagggttttaaaaatatatgaactgTTTTATATCAAtcttaaaacattaattgaagACACATTCACACTATTTTTAACTTAtagtatgtttgtatatgtgtgtgtaatatatatcaacacacagaggaaatgagggaataattacattttttgtgattCTCtggttattttcaaaatgatataGTGAGAATTGTTCTACTTATGATTGCCTTAAAACACAGCCCTatggtttatattttttgtattttgtaatctctgtctttcttttgtgtAATCTTAATCGTGGTGACAATTTCAATGTCACCATACTTAAACTCTCCAGATATAATCGGCAAATAAGGCACAAAAGAAGGGAAATACTTTATAAGAAGTCAGTCAAGGAAATGGAGATATCGTTAGAGGAATCTGATCGCCATTCCTAAAAGCTAGACGCGTAGAGAAATTGAATAGGTTTACTGTGTGATAAAGTATTAATAGGATCCTTACCTTGAGTCTTGAGTGGCCAAACAGTTAATCAAAATAGTCCTGGTTAAATCCATGTCCGTTACTTGGCTTCCATGGAGCGCTTTAGCCATGCATTTTTTGagcttttttaattcatttctgtTCTGGCAATTTCTTCCTTATCCAAAATGATCATAACTGAAACAATATTCTGTTCTGAAACTGTGACAATCtactttatttacacatttatttttctcaggtTCAACCTTCACTGTTTGCAAAAGATCATATATGGTCCCTACTTTTATTGGGGTGGGAACTGGTGGAATTGTAAAGGGACCTTTTCTTTATACCCATATGAAGCAAATCTATAAATGAATAACTGCTTTAGATATATCTTTCTTTGTTtacaattgtgtttgtttacaatcaGTGAGACCACTCATGGCATCTGAAAAAGGATCTAGTGAATCATATTACTTTGTTCAGTCTGTTACTTGGACCAATCTTCAGTTTGCTTAGTCATGTTAAGTGTAAAGTCAATTAAAACACTATTATAAAAATGCTGTTGGCATTTGTGTGTTTAGCAGGCTATTATATTGATAAATACACTGTTTCTTGACAACTTTCAACTACAGTATATGGTTATGGGATTATCTTTAAATTAGTaagcatttcaaatgttatttgtcttttttatataCCTAGAAATACTTGTGAAGTTGTTATGTTGTACTGTGTATGTTAATGAACCATTAACATTGTTGCATGTGAGAATAACACTACTCTGCCCTTCCTACAGGGTATCTAAGGACCTCAGTCTGAGTTATGTAATTTGTCTTAACCCATCCTCTAATCTAAAACAagtccaatgcattttacaaacacCTCCCTGCCAGAATGTCTATTAGCTCACTTAGGTCAATGTAATCCATTTACAATCCTAGCCCAGGCACTGAGAATAAAACAGGTCTTCACAAGTGCACCGAGCAAGGGAACAGCTCACAAGTTCCCAAACATTTCCATTCAAGTCTTCCACACATTGCAGGCACCACAAAC

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K12301 SLC17A5; MFS transporter, ACS family, solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001688 True 3572 mRNA 0.40 11 12508278 12515505

Neighbor

gene id symbol gene type direction distance location
AMCG00001687 NA coding upstream 5084 12475188 ~ 12503194 (+)
AMCG00001692 slc24a3,LOC106576975 coding upstream 59094 12425951 ~ 12449184 (+)
AMCG00001686 dtd1,LOC107752123,LOC102798855,LOC107551933,LOC107678219 coding upstream 159883 12335024 ~ 12348395 (+)
AMCG00001693 LOC106911521,LOC103131642,LOC101466658,LOC103131658 coding upstream 178795 12317845 ~ 12329483 (+)
AMCG00001690 NA coding upstream 399959 12088205 ~ 12108319 (+)
AMCG00001689 LOC102208791,LOC101485550,LOC101166076,LOC107375892,LOC105023253,LOC107098978,LOC103476462 coding downstream 1507 12517012 ~ 12520705 (+)
AMCG00001695 NA coding downstream 5984 12521489 ~ 12526395 (+)
AMCG00001698 NA coding downstream 271577 12787082 ~ 12792831 (+)
AMCG00001699 b3gat2 coding downstream 328659 12844164 ~ 12852723 (+)
AMCG00001708 col9a1 coding downstream 469394 12984899 ~ 13011789 (+)
G159594 NA non-coding upstream 860826 11625671 ~ 11647452 (+)
G159483 NA non-coding upstream 1068666 11436662 ~ 11439612 (+)
G159441 NA non-coding upstream 1286370 11217319 ~ 11221908 (+)
G159378 NA non-coding upstream 1536188 10969401 ~ 10972090 (+)
G159377 NA non-coding upstream 1539877 10967334 ~ 10968401 (+)
G159775 LOC102207824,LOC102800191,LOC107693914 non-coding downstream 161306 12676811 ~ 12679489 (+)
G159798 NA non-coding downstream 270290 12785795 ~ 12876686 (+)
G159800 NA non-coding downstream 284004 12799509 ~ 12810735 (+)
G160024 NA non-coding downstream 1751883 14267388 ~ 14267722 (+)
G160036 NA non-coding downstream 1790520 14306025 ~ 14306260 (+)
AMCG00001691 NA other upstream 174578 12329979 ~ 12333700 (+)
AMCG00001645 NA other upstream 1750420 10747489 ~ 10757858 (+)
AMCG00001643 spred2 other upstream 1830424 10655187 ~ 10677854 (+)
AMCG00001630 NA other upstream 2348452 10157734 ~ 10159826 (+)
G159174 NA other upstream 2593614 9913308 ~ 9914664 (+)
G160026 NA other downstream 1754110 14269615 ~ 14270190 (+)
AMCG00001760 mpc1,LOC107725004,LOC106589821,LOC107693783 other downstream 2816115 15331620 ~ 15334580 (+)
AMCG00001762 NA other downstream 2916832 15432337 ~ 15439031 (+)
AMCG00001814 ryr2,LOC106456445,LOC108410403,LOC106906861,LOC101062804,LOC103129799 other downstream 3721757 16237262 ~ 16377860 (+)
AMCG00001841 NA other downstream 4664089 17179594 ~ 17182601 (+)

Expression


Co-expression Network