AMCG00001690


Basic Information

Item Value
gene id AMCG00001690
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 12088205 ~ 12108319 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001690
AAAGTTTCGTATTCAAGAGGCGCTGACGCGGCGAGGGCGGGGCCAGCAATGCAGCCGCGGGAGTGTTGAGAGCTCAACTTTTGTAAAGCAGCTGACGCGGTAGAGGCAGAACTGCACAAGtactgtacaatgGCTGAGACGTCTTCACTGATAAAGCTGAGCCCACTGCTTCTGCCTCAGAACAAGGACAAGACTGTGTACGATGGGTTTATCACAGCTCAGgAAAAGGATTTCAGAATAAGAATCGTCTTGCCATCCGATCATCAGCTGAAACACGCAAGGCTGCAGTGCTGCTGGCAACTGAAGCAGATATTGCATGGATATCAACATATAATAAAACAGAGACTGCAGCATTCTTCGGATTTGCTGGGTTTTATGTTAGAGCTGAAAGCTGTTTTGGAACTGGCACtgaagaacaagcaggaatTACACGCAGCCCCCCCTCCACAGTACTACACACAGCTTATTAAAGAAATAGAATGCCTTGGATGGGATAAGCTTGTGTCCATTGACACAGAATTTAGCACTCTGAAGCTGAAGGCTGAAGACACTTCTGGTCGGGAACATCTGATTACAGTTAAATTAAAGGCCAAGCACCCAGCAGAACCCCCTGACTTCTCCGCTGACTTTCCAATCCCCCTGGTCATCGGCTGGACATGTCTGAGCTCTCTGATACACATTCACAGCCAGTTTCTGGCAGCGTTGGAGTCATTAAAGGAGTTTTGGGATGTAATGGATGAATTTGATGAGAAGACCTGGGTGCTTGAGCCAGAGAAGCCAACCAGAAGTGCCACAATGCGAAGAATTGCCATAGtTGTCACCCCCTTAAGGAATAAGTTGAATGCCAACATACACTTATGGAACCCAGAATGCAGTGTACTACAGAACATGAAGGACATTTTGGAAATCGAATTCCCCACAGCTGCCTCCCACGAAAAAGCtAATTTCAGTATGGAATGTGGCATTTGTTATTCATATCGACTTGATTCCGCCACACCAGATCAAGTGTGCAATGATCCACGATGTGGTCAGCCCTTCCATCAAGCCTGTCTATATGAGtggctCAGAGGGCTTCCCTCCAGTAGGCAGAGTTTTAACACCATCTTTGGAGAATGTCCATACTGTAGAAAGccaATTACAGTGAAAATGACTATGAAGAAACCCTGATGAGTCTATTTGTTCAATGGATCTTGACTGAAGATGAAATCAGTACTATGGATGAACACACAGTTATTTCCTAAGTGTTTGATTTGAAAttcaaacagcaaacaaaagaaagaaaatcaagaaCAGGAGTACACTTATTATACTGCTGTATAGTTTAACATGTGTAGGTATTGTGGATTCATTCCTGAATTCCTGTCTAGGCCGAGGTAGGACACAATCATCCCGGGTTGTTTCTTCCCTCTGTACATCATCAACCCATGTACTGCTTTGATTCTGTTCAGTGTCTTCTTTGGATTCCTTTATTCTATGGATCCTTTGGGCTGGTGAAACCTTTTTGTTCTGAAACAAAGCGTATTTGACAAGAACTTAGAGAAAGGTGTATGTTTTAACTAACTGCTCCTATAATTCAATGATCACTGGTAGAAAAAGCAAATCCCAAAGACGTTTTTGAAATGTTGTGTCCTTAAGATATGTTaacatagtttttaaatatgacaCAGAATTGTTAAAGCTGTACAATGTGTAAACCTGTGGTAATAAAGATTCA

Function

GO:

id name namespace
GO:0048599 oocyte development biological_process
GO:0016567 protein ubiquitination biological_process
GO:0006281 DNA repair biological_process
GO:0043240 Fanconi anaemia nuclear complex cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10606 FANCL, PHF9; E3 ubiquitin-protein ligase FANCL

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001690 True 1714 mRNA 0.43 14 12088205 12108319

Neighbor

gene id symbol gene type direction distance location
AMCG00001674 bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107655449,LOC107743494,LOC107559339 coding upstream 472960 11613188 ~ 11615245 (+)
AMCG00001676 NA coding upstream 580696 11495066 ~ 11507509 (+)
AMCG00001677 NA coding upstream 691230 11385284 ~ 11396975 (+)
AMCG00001678 usp34,LOC106585779 coding upstream 715524 11346559 ~ 11372681 (+)
AMCG00001679 NA coding upstream 741790 11338367 ~ 11346415 (+)
AMCG00001693 LOC106911521,LOC103131642,LOC101466658,LOC103131658 coding downstream 209526 12317845 ~ 12329483 (+)
AMCG00001686 dtd1,LOC107752123,LOC102798855,LOC107551933,LOC107678219 coding downstream 226705 12335024 ~ 12348395 (+)
AMCG00001692 slc24a3,LOC106576975 coding downstream 317632 12425951 ~ 12449184 (+)
AMCG00001687 NA coding downstream 366869 12475188 ~ 12503194 (+)
AMCG00001688 NA coding downstream 399959 12508278 ~ 12515505 (+)
G159594 NA non-coding upstream 440753 11625671 ~ 11647452 (+)
G159483 NA non-coding upstream 648593 11436662 ~ 11439612 (+)
G159441 NA non-coding upstream 866297 11217319 ~ 11221908 (+)
G159378 NA non-coding upstream 1116115 10969401 ~ 10972090 (+)
G159377 NA non-coding upstream 1119804 10967334 ~ 10968401 (+)
G159775 LOC102207824,LOC102800191,LOC107693914 non-coding downstream 568492 12676811 ~ 12679489 (+)
G159798 NA non-coding downstream 677476 12785795 ~ 12876686 (+)
G159800 NA non-coding downstream 691190 12799509 ~ 12810735 (+)
G160024 NA non-coding downstream 2159069 14267388 ~ 14267722 (+)
G160036 NA non-coding downstream 2197706 14306025 ~ 14306260 (+)
AMCG00001645 NA other upstream 1330347 10747489 ~ 10757858 (+)
AMCG00001643 spred2 other upstream 1410351 10655187 ~ 10677854 (+)
AMCG00001630 NA other upstream 1928379 10157734 ~ 10159826 (+)
G159174 NA other upstream 2173541 9913308 ~ 9914664 (+)
G158836 NA other upstream 3926390 8159146 ~ 8161815 (+)
AMCG00001691 NA other downstream 221660 12329979 ~ 12333700 (+)
G160026 NA other downstream 2161296 14269615 ~ 14270190 (+)
AMCG00001760 mpc1,LOC107725004,LOC106589821,LOC107693783 other downstream 3223301 15331620 ~ 15334580 (+)
AMCG00001762 NA other downstream 3324018 15432337 ~ 15439031 (+)
AMCG00001814 ryr2,LOC106456445,LOC108410403,LOC106906861,LOC101062804,LOC103129799 other downstream 4128943 16237262 ~ 16377860 (+)

Expression


Co-expression Network