AMCG00001692 (slc24a3,LOC106576975)


Basic Information

Item Value
gene id AMCG00001692
gene name slc24a3,LOC106576975
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 12425951 ~ 12449184 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001692
CTCTTCATGAATTCCCCACGGACCTTTTCACGCACAAGGATAGACAGGAGGGTGCCATTGCTCTGCATGTCATGTGTGCGATGTACATGTTCTATGCCCTGGCCCTTGTTTGTGATGACTACTTTGTTCCCTCCCTGGAGAAAATTTGTTTACGTCTGCACCTCAGTGAAGATGTGGCAGGGGCAACCTTCATGGCGGCAGGAAGTTCAGCTCCTGAACTTTTTACATCAGTCATTGGAGTGTTTATTACCAAGGGAGATGTGGGTGTTGGGACTATTGTTGGATCTGCAGTATTTAATATCCTCTGTATAATTGGAGTCTGTGGGATTTTTGCTGGGCAGGCCGTCCACCTGTCCTGTTGGACTCTTCTCAGGGACTCTGCGTTCTATACCCTATCAGTGGCCGCGCTCATCGTGtttattCATGATGAAAAGGTTTCCTGGTGGGagtcattaattttaatatcgATGTACTTGGTGTACATTATGATCATGAAgtttaACTCCACGGCACAGCGTTACTTTGATAGAAGGAAGAAGGGTGCAATAAATTTGGCCAATGGAACAGCAAATAATACAGACATGGATGATAACAGCAACTGTGACGCTACTGTAGTGCTACTAAAGAAAGCAAACTTCCATCGCAAGACCTCCGTGCTGATGGTGGACGAGCTGCTGTCCGCATACCCTCACCAGCTCTCCTTCTCTGAGGCCGGCCTGCGAATCATGATCACCAACCACTTCCCTCCGCGCACCAGGCTCACCATGGCCAGCCGAATGCTAATCACTGAGAGGCAGCGGCTGATCAACAACAAGACTTTCAGCAACGGTGACTCTGACGTGGCCATCAGGATCCCCAATAAACATGGTATCGAGAACGGGCTAGGCCTGGGCACCTCCTCCGACAGGGGCATGAACGGCCGCCACGGCGAAGACGATGGGATGGAGACCGGCAACGAGACCGAGAACGAGAATGAGGACAACGAGAACAATGAGAAtgatgaagaggaagaggatgatgatgaaaatgaagGGCCCCTTGTGCCCTTTAACCCCCCAGCTGGTGTGTGTAACAAGATTAAGTGGCTTTTGGCTTGGCCACTCTGTCTTCTGCTCTATTTCACCATCCCCAACTGTGGATTGCCCCGGTGGGAGAAGTGGTTTATGGTCACGTTCATAACCTCTACCATGTGGATTGCATGCTTCTCCTACGTTATGGTCTGGATGgTGACTGTAATTGGATTCACTCTGGGAATCCCAGATGTGATCATGGGTATAACCTTTCTGGCAGCAGGGACCAGTGTACCAGACTGCATGGCCAGTCTCATTGTGGCACGGCAAGGCTTGGGGGATATGGCAGTCTCAAACTCCATTGGCAGCAACGTGTTTGACATTTTAGTAGGACTTGGACTTCCATGGACATTGCAGACATTGGCCATTGATTAtggttcatataTTCATCTGAACAGCAAAGGACTCATTTTTTCTGTTGGACTGTTGTTAGCTTCAGTTTTTCTCACAGTTCTGGGTGTCCATCTGAACAAATGGGTGTTGGATAAGAAACTGGGGTTTGTGTGCCTTTTTCTGTACGCCATTTTCCTGTGTTTCTCCATCATGATCGAGTTCAATGTCTTCACGTTTGTCAACCTACCGATGTGCCGGGATCTC

Function

symbol description
slc24a3 Predicted to enable calcium channel activity and calcium, potassium:sodium antiporter activity. Predicted to be involved in calcium ion transmembrane transport and cellular calcium ion homeostasis. Predicted to act upstream of or within calcium ion transport and transmembrane transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human SLC24A3 (solute carrier family 24 member 3).

NR:

description
PREDICTED: sodium/potassium/calcium exchanger 3-like

GO: NA

KEGG:

id description
K13751 SLC24A3, NCKX3; solute carrier family 24 (sodium/potassium/calcium exchanger), member 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001692 True 1667 mRNA 0.49 15 12425951 12449184

Neighbor

gene id symbol gene type direction distance location
AMCG00001686 dtd1,LOC107752123,LOC102798855,LOC107551933,LOC107678219 coding upstream 77556 12335024 ~ 12348395 (+)
AMCG00001693 LOC106911521,LOC103131642,LOC101466658,LOC103131658 coding upstream 96468 12317845 ~ 12329483 (+)
AMCG00001690 NA coding upstream 317632 12088205 ~ 12108319 (+)
AMCG00001674 bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107655449,LOC107743494,LOC107559339 coding upstream 810706 11613188 ~ 11615245 (+)
AMCG00001676 NA coding upstream 918442 11495066 ~ 11507509 (+)
AMCG00001687 NA coding downstream 26004 12475188 ~ 12503194 (+)
AMCG00001688 NA coding downstream 59094 12508278 ~ 12515505 (+)
AMCG00001689 LOC102208791,LOC101485550,LOC101166076,LOC107375892,LOC105023253,LOC107098978,LOC103476462 coding downstream 67828 12517012 ~ 12520705 (+)
AMCG00001695 NA coding downstream 72305 12521489 ~ 12526395 (+)
AMCG00001698 NA coding downstream 337898 12787082 ~ 12792831 (+)
G159594 NA non-coding upstream 778499 11625671 ~ 11647452 (+)
G159483 NA non-coding upstream 986339 11436662 ~ 11439612 (+)
G159441 NA non-coding upstream 1204043 11217319 ~ 11221908 (+)
G159378 NA non-coding upstream 1453861 10969401 ~ 10972090 (+)
G159377 NA non-coding upstream 1457550 10967334 ~ 10968401 (+)
G159775 LOC102207824,LOC102800191,LOC107693914 non-coding downstream 227627 12676811 ~ 12679489 (+)
G159798 NA non-coding downstream 336611 12785795 ~ 12876686 (+)
G159800 NA non-coding downstream 350325 12799509 ~ 12810735 (+)
G160024 NA non-coding downstream 1818204 14267388 ~ 14267722 (+)
G160036 NA non-coding downstream 1856841 14306025 ~ 14306260 (+)
AMCG00001691 NA other upstream 92251 12329979 ~ 12333700 (+)
AMCG00001645 NA other upstream 1668093 10747489 ~ 10757858 (+)
AMCG00001643 spred2 other upstream 1748097 10655187 ~ 10677854 (+)
AMCG00001630 NA other upstream 2266125 10157734 ~ 10159826 (+)
G159174 NA other upstream 2511287 9913308 ~ 9914664 (+)
G160026 NA other downstream 1820431 14269615 ~ 14270190 (+)
AMCG00001760 mpc1,LOC107725004,LOC106589821,LOC107693783 other downstream 2882436 15331620 ~ 15334580 (+)
AMCG00001762 NA other downstream 2983153 15432337 ~ 15439031 (+)
AMCG00001814 ryr2,LOC106456445,LOC108410403,LOC106906861,LOC101062804,LOC103129799 other downstream 3788078 16237262 ~ 16377860 (+)
AMCG00001841 NA other downstream 4730410 17179594 ~ 17182601 (+)

Expression


Co-expression Network