AMCG00001693 (LOC106911521,LOC103131642,LOC101466658,LOC103131658)


Basic Information

Item Value
gene id AMCG00001693
gene name LOC106911521,LOC103131642,LOC101466658,LOC103131658
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 12317845 ~ 12329483 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001693
tattgatttaatatttatgtaatgtttataGACAATTACTGAATGAAAGAATGATTGACAGGTTTTTGTAACTGAAATCCTATCTTTCTTTATGGAGAATGTGTGAGCAATAGATGTTGTGgtcattacattatatttcagtAGAGACTACGCAGGTACACGTAGGTATGGGCGTGCCAAAAAAGCAAGATAAAACAAGCTGGTAAACCGGTAGCAGCAGTGTTTTCAAGTGCGCACTTCTCTTAAAAACCTCTTTATTTCACTGGATAAAGATTAATAAGGGAACATGACATTCTTGTGGTACTGTGTCTGTGGACTGTTTTTCTTCACAACTGTGAAGGCTACCAAGGGGCTTGTAGGAGGCATTGAAGAGATTCCTGTGAATAACTCTGGAGTACTTAGGAGTGCCCAGTTTGCTCTGGATAAGTATAATAATGCAAGCAATGATatgttcattaataaaataactcaaattttcaatgcaaaactgcaggTGGTTAGTGGGATTATGTACCAGTTTGGTGCTAAAATAGGACGCACAGACTGCATGAAAAGAAATTTCCCTAATGCAGAGTCATGTCCTTCAGCCCCAAGTCACGatcagCAGAATGAGGACCGGGACGGGGTGCGCTTCAGCTGGAACGTCTGGCCCTCGAGCCGACTGGAGGCCACAAGGATGGTGGTGCCCCTGTCCTGCCTCTTCACCCCCTTGAAGGAGCGCCTGGACCTCCCTCCAGTGCAGTACGAACCCGTACTCTGCAGCCGGCCCAACTGCAAAGCTGTGCTCAACCCCCTCTGtCAAGTTGATTACAGAGCCAAACTATGGGCGTGCAACTTTTGTTTCCAAAGAAACCCATTCCCCCCCACATATGCAGGCATATCAGAAGTCAACCAACCAGCTGAACTAATGGCACAGTTCTCTACAATTGAATATATTGTACAGcgTGGACCCCAGACCCCTCTGATCTTCCTGTATGTGGTGGACACATGTCTGGAAGAGGAGGACCTTCAGGCGTTGAAGGAGTCCTTGCAGATGTCCCTGAGTCTCCTCCCTCCTGACGCACTGGTTGGCCTGATCACATTTGGCAGGATGGTCCAGGTGCATGAGCTGAGCTGTGAAGGCATCTCCAAGAGCTACGTCTTCAGGGGGACCAAGGATCTGTCAGCTAAACAAATCCAGgAAATGTTGGGTCTGATGAAGCCTGCAGCCCCAGTACAACAAGGGAGACCTGCTCCACCTCAGGAAACGTCCACCTCCAGCAGGTTTTTGCAGCCTGTGCATAAGATTGATATGAACCTGACTGACCTCCTTGGGGAGCTTCAGAGGGACCCCTGGCCTGTCCCTCAGGGGAAGAGACCCCTCAGATCTACTGGTATCGCCCTGTCCATTGCTGTGGGGCTCCTGGAGGGTACTTTCCCCAACACCGGGGCTCGAGTGATGCTCTTCACGGGCGGCCCACCAACGCAAGGCCCAGGGATGGTTGTGGGCGATGAGCTGAAAACCCCTATCCGCTCCTGGCACGACATTGAGAAGGACAACGCTCGCCACCTGAAGAAAGCAACCAAGTACTATGAAGCTTTGGCCAACCGTGCAGCTGTTAACAGTCACTGTATTGACATCTATGCCTGTGCTCTGGACCAGACTGGTCTTCTGGAAATGAAGTGTTGTTCAAACCTTACAGGGGGTTACATTGTAATGGGGGATTCCTTCAATACTTCTCTGTTCAAGCAGACATTCCAGAGAGTCTTTAGTAAAGATTACAACGGGGAATTCCGCATGGCTTTTGGAGGAACATTGGAAGTCAAGACTTCAAGGGAGCTGAAGGTTTCTGGAGCCATTGGTCCGTGTGTCTCTCTTAACGTAAAGGGGCCGTGTGTGTCAGAAAATGAAATGGGAGTTGGTGGGACAAACCAGTGGAAGGTGTGCAGTCTTAACCCCTCCACCACACTCGCAGTCTATTTCGAAGTTGTGAATCAGcACAATGCGCCAATTCCTCAGGGAGGTCGAGGAGCCATTCAGTTTGTCACGCAGTACCAACATTCGAGCACACAGAGGCGGGTCAGAGTGACAACGGTTGCTAGGAACTGGGCCGATGCACAGTCTCAGATCCAGCACATAGAAGCGTCCTTTGACCAGGAGGCGTCGGCTGTTTTGATGGCACGCCTGGGTGTGTTCAGAGCCGAATCTGAAGAGGGGCCCGATGTGCTGAGATGGCTGGACAGGCAATTGATCAGGCTGtgtcAGAAGTTCGGACAATTCAATAAAGACGACCCAACCTCTTTCAGGCTGTCGGAGTCCTTTTCTCTTTACCCACAGTTCATGTTCCATTTGCGGAGATCACCTTTCCTTCAGGTGTTCAACAACAGCCCTGATGAGTCCTCGTATTATCGCCACCATTTCGTGCGACAGGACCTGACCCAGTCGCTCATCATGATCCAGCCTATCCTGTATTCCTACTCCTTCTATGGACCTCCAGAGACCATTGCACAGTGGCGCAAAGCGGGATACCAAGAGATGGCTGAGTACGAGAACTTCAAACAGCTCCTCCAGGCTCCTTTGGATGACGCCCAGGAGATCCTGCAGACGCGCTTCCCAATGCCCCGCTATGTTGACACCGAGCACGGAGGCAGCCAGGCTCGGTTTCTTCTGTCAAAGGTGAACCCATCTCAGACGCATAACAACTTGTATGCATGGGGACAGGAATCTGGGGCCCCCATTCTGACCGATGACGTGAGCTTGCAGGTGTTTATGGATCACTTGAAGAAACTTGCCGTTTCTAGTGCGTCATGATCGTGTTAAAGCACCCGTCTGAAGGATTCTTCGGGAAAGCTATCCATCTCTATTGGACCTATTGACATTTCAAATCCttacaatatttaaactttaaagtaTTCGTTTTGCTTTTGTATATGTACTTCTGTCATGAAGCATACTGTAGAGATAGAGGTTTTAATGGGATGATGAAACATCAGGCTTCAGAAGTTCAGAAAAGGTCAAACATTTTTACAGTCACCATTCCTTTTATAATTCCTTTTGTATCTTATTTCTGGAAAGGAATGACCAATTAACTTTTGTAAACCTGTAGTTTACATTTTGGTATTGTACCTGTAATAACTGTCCAATGATTATTGCACACTGATATGACTGTTTTTGCAAAGCAAGCTGTAAGAAAATGTTCTTATGAATGGAATACTTCTTATTAAgcttattttctgaatatttagAAACTTTAAGGCTGTAATTTCCATGAAGAACATGGATATGATAACCTCGAATTTTAAGTCATGTGCATTGTTAAAAAAACTGATGCATTTCCTCATCATGCAGAATTAgcatgcaaatgcaaaatatagtATATGATTAATGCATTCCATTGATCTAATAAGTCTTTAGTTTGTATAGATTTAGGAAGCATTGTAGTAATTCTAagtgtatgtataaatgtatgtttcacctgtttatattgtataaaaaatgaTCTCAGAATTTAATGTCTTAATTCCTGCTTCACCATTAAactgataaaatacaaacaa

Function

NR:

description
PREDICTED: protein transport protein Sec23B

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0048821 erythrocyte development biological_process
GO:0051216 cartilage development biological_process
GO:0048702 embryonic neurocranium morphogenesis biological_process
GO:0030127 COPII vesicle coat cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K14006 SEC23; protein transport protein SEC23

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001693 True 3537 mRNA 0.46 21 12317845 12329483

Neighbor

gene id symbol gene type direction distance location
AMCG00001690 NA coding upstream 209526 12088205 ~ 12108319 (+)
AMCG00001674 bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107655449,LOC107743494,LOC107559339 coding upstream 702600 11613188 ~ 11615245 (+)
AMCG00001676 NA coding upstream 810336 11495066 ~ 11507509 (+)
AMCG00001677 NA coding upstream 920870 11385284 ~ 11396975 (+)
AMCG00001678 usp34,LOC106585779 coding upstream 945164 11346559 ~ 11372681 (+)
AMCG00001686 dtd1,LOC107752123,LOC102798855,LOC107551933,LOC107678219 coding downstream 5541 12335024 ~ 12348395 (+)
AMCG00001692 slc24a3,LOC106576975 coding downstream 96468 12425951 ~ 12449184 (+)
AMCG00001687 NA coding downstream 145705 12475188 ~ 12503194 (+)
AMCG00001688 NA coding downstream 178795 12508278 ~ 12515505 (+)
AMCG00001689 LOC102208791,LOC101485550,LOC101166076,LOC107375892,LOC105023253,LOC107098978,LOC103476462 coding downstream 187529 12517012 ~ 12520705 (+)
G159594 NA non-coding upstream 670393 11625671 ~ 11647452 (+)
G159483 NA non-coding upstream 878233 11436662 ~ 11439612 (+)
G159441 NA non-coding upstream 1095937 11217319 ~ 11221908 (+)
G159378 NA non-coding upstream 1345755 10969401 ~ 10972090 (+)
G159377 NA non-coding upstream 1349444 10967334 ~ 10968401 (+)
G159775 LOC102207824,LOC102800191,LOC107693914 non-coding downstream 347328 12676811 ~ 12679489 (+)
G159798 NA non-coding downstream 456312 12785795 ~ 12876686 (+)
G159800 NA non-coding downstream 470026 12799509 ~ 12810735 (+)
G160024 NA non-coding downstream 1937905 14267388 ~ 14267722 (+)
G160036 NA non-coding downstream 1976542 14306025 ~ 14306260 (+)
AMCG00001645 NA other upstream 1559987 10747489 ~ 10757858 (+)
AMCG00001643 spred2 other upstream 1639991 10655187 ~ 10677854 (+)
AMCG00001630 NA other upstream 2158019 10157734 ~ 10159826 (+)
G159174 NA other upstream 2403181 9913308 ~ 9914664 (+)
G158836 NA other upstream 4156030 8159146 ~ 8161815 (+)
AMCG00001691 NA other downstream 496 12329979 ~ 12333700 (+)
G160026 NA other downstream 1940132 14269615 ~ 14270190 (+)
AMCG00001760 mpc1,LOC107725004,LOC106589821,LOC107693783 other downstream 3002137 15331620 ~ 15334580 (+)
AMCG00001762 NA other downstream 3102854 15432337 ~ 15439031 (+)
AMCG00001814 ryr2,LOC106456445,LOC108410403,LOC106906861,LOC101062804,LOC103129799 other downstream 3907779 16237262 ~ 16377860 (+)

Expression


Co-expression Network