AMCG00001695


Basic Information

Item Value
gene id AMCG00001695
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 12521489 ~ 12526395 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001695
CTGCGTGTACATAGTTAAACCTTCATGGAGTTTGGAAACAACTTTAGTCTCCCTGGAGAAGGATATCCACGGAGAAATAATAATCACGTTTGCATTACAAATGtctacacacaaatacatttcaaatagcaGTCTTGCCCTGTACTGCCGCGTTGCTCTGCCCACTACGATGAACGGGAACCCGGCAGCTGCTGTCCGGAGGAGAGCCAGGAACCAGGAGCCAGCGAGAAGCCCGAATGCAGCCAGGAAAGCTCCGGTATGCCGAAGAGGAAGAAGCCCCAGAGCTGCGGACAATGACAAGGGTAAAGCGGCATGCCCTACACGTGGGAAGGTCCCAGCCTGTCACAAGCCCTGTGGGCCATTACCCGCGCCGGACCGGGTCAAAGCGGCGAGCCCTCAGCGCCCCGCCGCGGCCGCCAGAGCCAGGGCTCCTGCCAAGATTAAAGCAGGAAAAGGCGCTCCACACAGTCCCGAGAGGGTCCTGCAGTCGACGCTTGAGAGTTTAAAGATCAGGAAAAAAGCCAGGGGGGACGTGGCCGGTGAAGTGAACAAAATCGTGGAAGGGatcataaagcatttaaaaacgAAATCAGACTGCTTCAGTGAAATCGAGAAACTGCCCACTGGAAGCTACTACGAGAATGTGAAGATCTCTGAACCAAATGAGTTTGACGTGATGCTGACAGTGCCGGTCCAAAGAGTTGAGCTCCAGGAGTTTGATTCGGAGGGGGCTTTCTACAGTGTATCATTCAAAAGAAACCCCCAAAAGCGCCCGCTGGATCGCTTTGTCCTGAACGACAGGACCATCTCTGCCAACAAGATGCTCAAGGACTTCAGGAATCACATCAAACAAGCCACTGCATCAGTGAGCAGTGTAAAACTGGAAAGGAAGAAAGCAGGATGTCCTGCAGTGACCTTATTAATGAAAGTTAAAGGTCGAGAGGTGGGTTTGGACATCGTGTTGGGTCTTAAGGTCCACGCACAGAGCTGGCCCACGATCACCAAGGATGGCTTCAACATCGACGGCTGGCTGGGCACCAAAGTGAAACAAGAGTTCAAGAGATGCCCCTTCTACCTGGTGCCAAAATATGTTGGCAAGGGCACTGATGAAAAACACGGAGTCTGTGCAAAAGATACATGGCGGATTTCATTCTCGCACGTGGAAAAGGGCATCTTGAAGAATCATGGATTTGCCAAGACTTGTTGTGAATCTGGAGGCTCACAATGTTGCAGGAAACAGTGTCTAAAACTCCTTAAATGTTTACTACAaaaactgaaagagaaacatCCAGAACTGGCAAAGTTTTTCTCCTATCAAGCAAAGACCGCCCTTCTCCATGCTTGTGTGAAGAGACCACAGGACAGCGACTGGGAGATCAAGGAACTCGATGACTGTTTTCAACAGTTCCTTGACGATTTCATCCAGTATCTGAAAGCTGGGGATCTCCCTCACTTTTTTATCCCAACTTACAATCTTTTATATTCTACAACTAAATCACACCGACAGTTTCTGATCAAGTGTATTGAAGAACAACGAAACAACAGGTTTCCAGTTTTCAGGAACTGAAATTAAACCGATCCTATATGGAAAGGACGAATCAATTTTTATATTGAACAGATGTGAAGTTATGCAATATTCAATTGcacaatattatattacaatgtgcttattttacatttgtcttaAAGTGCTG

Function

GO: NA

KEGG:

id description
K17834 MB21D1; cyclic GMP-AMP synthase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001695 True 1694 mRNA 0.47 6 12521489 12526395

Neighbor

gene id symbol gene type direction distance location
AMCG00001689 LOC102208791,LOC101485550,LOC101166076,LOC107375892,LOC105023253,LOC107098978,LOC103476462 coding upstream 784 12517012 ~ 12520705 (+)
AMCG00001688 NA coding upstream 5984 12508278 ~ 12515505 (+)
AMCG00001687 NA coding upstream 18295 12475188 ~ 12503194 (+)
AMCG00001692 slc24a3,LOC106576975 coding upstream 72305 12425951 ~ 12449184 (+)
AMCG00001686 dtd1,LOC107752123,LOC102798855,LOC107551933,LOC107678219 coding upstream 173094 12335024 ~ 12348395 (+)
AMCG00001698 NA coding downstream 260687 12787082 ~ 12792831 (+)
AMCG00001699 b3gat2 coding downstream 317769 12844164 ~ 12852723 (+)
AMCG00001708 col9a1 coding downstream 458504 12984899 ~ 13011789 (+)
AMCG00001709 lmbrd1 coding downstream 614702 13141097 ~ 13150256 (+)
AMCG00001718 NA coding downstream 1065796 13592191 ~ 13602628 (+)
G159594 NA non-coding upstream 874037 11625671 ~ 11647452 (+)
G159483 NA non-coding upstream 1081877 11436662 ~ 11439612 (+)
G159441 NA non-coding upstream 1299581 11217319 ~ 11221908 (+)
G159378 NA non-coding upstream 1549399 10969401 ~ 10972090 (+)
G159377 NA non-coding upstream 1553088 10967334 ~ 10968401 (+)
G159775 LOC102207824,LOC102800191,LOC107693914 non-coding downstream 150416 12676811 ~ 12679489 (+)
G159798 NA non-coding downstream 259400 12785795 ~ 12876686 (+)
G159800 NA non-coding downstream 273114 12799509 ~ 12810735 (+)
G160024 NA non-coding downstream 1740993 14267388 ~ 14267722 (+)
G160036 NA non-coding downstream 1779630 14306025 ~ 14306260 (+)
AMCG00001691 NA other upstream 187789 12329979 ~ 12333700 (+)
AMCG00001645 NA other upstream 1763631 10747489 ~ 10757858 (+)
AMCG00001643 spred2 other upstream 1843635 10655187 ~ 10677854 (+)
AMCG00001630 NA other upstream 2361663 10157734 ~ 10159826 (+)
G159174 NA other upstream 2606825 9913308 ~ 9914664 (+)
G160026 NA other downstream 1743220 14269615 ~ 14270190 (+)
AMCG00001760 mpc1,LOC107725004,LOC106589821,LOC107693783 other downstream 2805225 15331620 ~ 15334580 (+)
AMCG00001762 NA other downstream 2905942 15432337 ~ 15439031 (+)
AMCG00001814 ryr2,LOC106456445,LOC108410403,LOC106906861,LOC101062804,LOC103129799 other downstream 3710867 16237262 ~ 16377860 (+)
AMCG00001841 NA other downstream 4653199 17179594 ~ 17182601 (+)

Expression


Co-expression Network