AMCG00001698


Basic Information

Item Value
gene id AMCG00001698
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 12787082 ~ 12792831 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001698
TGccacatttaattttcacttcAACACATCACACTACAACAGTAATACATAATCTCAggcatgttaattattatgcatatgGTAAACTATTGGTACAATTGGATAATAAGGTGTAATCTAGTCTTATGCAAATCTTCAAAGATACAAAAAGTCTTCTCCAACTCATGTCCTTAGTTCTTTTCTCCACTTCACATGAGAGAAGAGCTCCCGGTTAACCTggtaataaatgttttacttttgacATGCATCTGCTGAGAATTCCTGAAACCTCTTCAACACACACCCAAGTGTAGACCGACCGACGGGAGGAACAGATTTTTATTCCTGCTGTAACGTAGACGTGTAAAGCTCTAGTGGACTGTACGCGTCGTATTTATAACTCAAATCTTCCAATCTGCATTCTTTTACCAGGCTAACTGAAGACATGTTGCCAGTTATTGTGGCTCACGGTGGTGCCGGGTACATTCTCCCAGATAGGGAAGCGTCGGCCATCGCTGGAGTGCGTGAAGCTGTTCTTCATGGGTACAGCATCCTTCAACGTGGTGGGACCGCGCTGGACGCTGTGGAAGAGACCGTAGTGCTTTTAGAGAATAACCCAAAGTTTAATGCTGGCTGTGGATCTGTCCTGAATGAATTGGGAGAGGTTGAAATGGATGCTATCATCATGGATGGAAAAACTCTGAATAGTGGAGCAGTGTCTGCTATCAGAAGAATTGCAAACCCGATTAAACTATCGAGACTTGTTATGGAAAAGACGAGTCATCTATGTCTGACTGACCAAGGTGCTTCTAGGTTCGCCAAAGAAATGGGCATCCCTGAAGTGCCAGAGGAGTCCTTGATAACAGAGTACTCCCGGATGAGGTGGCAAAAGCTCAAGGAGTCTGGATTGGACCCAGTGGAAACTCAGATGGGGAAAACGGGCACAGTTGGTGCTGTGGCGATCGACTCTGAAGGGAACATAGCCAGCGCTACTTCTACTGGAGGAATGTTGAATAAGATGGTGGGACGGGTTGGTGATACACCTTGTATTGgGTGTGGTGCTTATGCAGATAACCAGGTGGGTGCAGTATCCCCGACTGGGCACGGCGAGGCCATCATGAAGGTGACATTGAGCAGACTCATCCTGTTTCACATGGAGCAAGGAAAGTCACCTAAGGAGGCTGCTGATGCTGCTTTGGGATACATGTATGAAAGAGTTCAGGGTCTTGCAGGTGTCGTGGTAGTTGACAAGACCGGTGACTGGTCCGCCCGTTTCAACAGCAGGCAAATGTCATGGGCAGCGGCCAAGAACAACCAGCTTCACTATGGCATTTACAAGGATCAGATCAATACTGAGCCCATTCCTAAAACTTAGTGCATCCTTCATGGAGCGTCTATCCAGGTTTATATGTTTctacacaataaaaatgtattaatacgtAGAACTACAGTTCTACAGTTCACTACAAAATGggaatgatttatatatacagtacaaacaCCAGTAACAAGATTTACTACCCTAAGTTTACTTCTCCTGATTGATAATGCAAGAATATCCTTacaaattctgtaaaaaaaataataaaagattcaAGCAGGAACCTCATCTAATCACACACAGAAGGTATAAGCCCATTGTCTACAACAgaaaattaattgtaaaaactacagtattaaaacaaatggaaaacagtaATGCCCtgggtacattttattttccaggagTATTGTCTTACGGTCTCCCTTAAAATCCAAACACATAGTTAAATTGGGATCTGAGCTGagcaacttatttatttattaaattaatggcATGCTGGAG

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0033345 asparagine catabolic process via L-aspartate biological_process
GO:0005737 cytoplasm cellular_component
GO:0003948 N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity molecular_function
GO:0008798 beta-aspartyl-peptidase activity molecular_function
GO:0004067 asparaginase activity molecular_function

KEGG:

id description
K13051 ASRGL1, iaaA; L-asparaginase / beta-aspartyl-peptidase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001698 True 1804 mRNA 0.43 6 12787082 12792831

Neighbor

gene id symbol gene type direction distance location
AMCG00001695 NA coding upstream 260687 12521489 ~ 12526395 (+)
AMCG00001689 LOC102208791,LOC101485550,LOC101166076,LOC107375892,LOC105023253,LOC107098978,LOC103476462 coding upstream 266377 12517012 ~ 12520705 (+)
AMCG00001688 NA coding upstream 271577 12508278 ~ 12515505 (+)
AMCG00001687 NA coding upstream 283888 12475188 ~ 12503194 (+)
AMCG00001692 slc24a3,LOC106576975 coding upstream 337898 12425951 ~ 12449184 (+)
AMCG00001699 b3gat2 coding downstream 51333 12844164 ~ 12852723 (+)
AMCG00001708 col9a1 coding downstream 192068 12984899 ~ 13011789 (+)
AMCG00001709 lmbrd1 coding downstream 348266 13141097 ~ 13150256 (+)
AMCG00001718 NA coding downstream 799360 13592191 ~ 13602628 (+)
AMCG00001717 NA coding downstream 825463 13618294 ~ 13661682 (+)
G159775 LOC102207824,LOC102800191,LOC107693914 non-coding upstream 107593 12676811 ~ 12679489 (+)
G159594 NA non-coding upstream 1139630 11625671 ~ 11647452 (+)
G159483 NA non-coding upstream 1347470 11436662 ~ 11439612 (+)
G159441 NA non-coding upstream 1565174 11217319 ~ 11221908 (+)
G159378 NA non-coding upstream 1814992 10969401 ~ 10972090 (+)
G159800 NA non-coding downstream 6678 12799509 ~ 12810735 (+)
G160024 NA non-coding downstream 1474557 14267388 ~ 14267722 (+)
G160036 NA non-coding downstream 1513194 14306025 ~ 14306260 (+)
G160107 NA non-coding downstream 1732906 14525737 ~ 14526508 (+)
G160116 NA non-coding downstream 1765935 14558766 ~ 14563369 (+)
AMCG00001691 NA other upstream 453382 12329979 ~ 12333700 (+)
AMCG00001645 NA other upstream 2029224 10747489 ~ 10757858 (+)
AMCG00001643 spred2 other upstream 2109228 10655187 ~ 10677854 (+)
AMCG00001630 NA other upstream 2627256 10157734 ~ 10159826 (+)
G159174 NA other upstream 2872418 9913308 ~ 9914664 (+)
G160026 NA other downstream 1476784 14269615 ~ 14270190 (+)
AMCG00001760 mpc1,LOC107725004,LOC106589821,LOC107693783 other downstream 2538789 15331620 ~ 15334580 (+)
AMCG00001762 NA other downstream 2639506 15432337 ~ 15439031 (+)
AMCG00001814 ryr2,LOC106456445,LOC108410403,LOC106906861,LOC101062804,LOC103129799 other downstream 3444431 16237262 ~ 16377860 (+)
AMCG00001841 NA other downstream 4386763 17179594 ~ 17182601 (+)

Expression


Co-expression Network