AMCG00001702


Basic Information

Item Value
gene id AMCG00001702
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 12931231 ~ 12937243 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001702
GTGACGTCAGGCACGTCGACGCCAGGAACGCAACCAATGAACGAACAGGGAATTGCGCTACTTCCTGTATGATGTCACTATTTCGTGGCGGCATTTTTGTACAGAGAAGACAGTAAAAGCAGCCATTCGTGAagtttggaaataaaatacGAGAAAATGgatgCAGACGAGCTTTTACAACATGCAAGAGCGCTGGCTAAACAGATGTCAGTCTACCAAGGCAGTCTTGCACCTGATCTAGccacagatgagtcttcagaaAGGACACAACGCGCAAGGGATGAGCTGCTTAATGAATGTGAAGAGCAATGGAAACAGCTGGAAGAGTTGCAGAATAAGATAACTCTGGCTGGCACAGACGCATTTCAGGACCCGGAAAGCCAGGTTTTGAATCACGTGAAAGCTCTCACAGCAGAGTTGAAGGAGTGGCAGGAACGACAACCTGAATtGCTGTCTAAGAATCATGAAGTCCTGCTTGCAGTTGGAAAGGAAGAGcTGCAGAGTGTGAACAAAGAACTTGAAATGGTCCTGTCTTGTTGTCAAGCGAAGAATGAAAAGTTGAAACAAGATTTAAAAAGTGAGCAAAAGTGGTTAGAAGAGCAGCAGGAGCTGTTAACGGCAGCGACTGACCGAACGGCTGAACTGCAGAATGAAATAAGCAGATTATCAGAAGCTGGggtTGTGcaggaaatgaagaaaaaaatccagaaagTGAAAGCCTACCAGGAAAGCTTGCTGGACACTTTGGGAGACTTCCTCGCTGAACACTTTCCTCTTCCTCAGCAGCAAGGAAATgcaaacaagaagaaaaaaAACTTTTCTCCCCCATCGACTGTGGATCTTATTTCACTACATGAAATACTAGAGcttttaatgaacaaaatgtttGAGACGCCTCATGAACCATATGTGACTATCGATGAGTCTTTCTGGCCACCCTATATCGAGATGCTTCTTCGACATGGAATTGCTCTGAGACACCCCGAAAACTGCTACAAAATTCGTTTGGAAGCCTTTCATCAGTAAACCACATGAGATCATTTTAATGAGCAAAACCGTTCACATTTTCCACAACTGAGTTACAGAGGGAGAAGAATAAATAACAATCTTTGCTTTAAAGGAAGATACAATTAAGTTTCTCCTACATGGAAGTTGTACTGCATTGCTGAATTTCTGTCCCTGCTTTTATATTTCCTAATGCATCTGAGATCACTGCTAAAACgataccattttatttatttttgggggtagaaaatgttttactgtttgtACAGATAGCTTTTATGTTTGTATACTTTTATTcggtttaaataaatacattgtacagCTGAGGTACGCATTAATTCAATGTCATCTGTTATGGTCACTAGACAAGTTTCGTGGATGATCGAAATATtgctaagaaatgtatatttaaaggaaaagtaGCCTacagttaataataaatatatgcaaatataatgtataaaaaccGAGGCTCTGTGATATGTTCCCTCGTTTTAAACGTGTCTGTACAAGCACATCTAACAACAGCCAGCGTAAAGCACTGAAACGCAATATAAACCGGTTAAGTGACAAAACTATTATGAATCCAATGCAGACAGAAAACCTGATAATCTGGGAAATTAATCACTGTTGTAAAGTATAGCTGCATACACTCAAGCGGAGCTCCCAGTCTTTCCAAGCTTTTCTGCGACTGCACGCCCACATCTAGTCGCTTTATGATGACGTAGTTTATTTACGTTATATCACCGCGCCAGACAAGTTAAAGTCACTTAGctattgcacattttctttttctgtccaAAACCCGCCATCGTTATgtcttcaatacatttttgtagcTTTACTACAAGGCATATTGTTTTTCGAGGTTTGCTTAAGGAACCTGGACATTATGCTGCTTCTTTAAGGCTCGCTAGCTCCACTGCCGATGGTAAACCACAAAGCAAGAATGAACCTTTGAAGAAGCCCAAAACACCTCAGGGCCGGTTTGACAGTCCCGAACAAGCACCTGCTGACAAGGATGTCCTGGAAAGATTTCCTAATGATGTGAACCCGGCAACAAAGGAGAAGGGAGGCCCCCGAGGCCCTGAGCCCACTCGCTATGGGGACTGGGAGAGAAAGGGACGGTGCATTGACTTTTAATCCATTCATAATACACTCATattgtatgaaaatgtaaagggtGTGAGTAATGCATCAtaatacaaaaagagaaaatgtaaatgatttgGTTCTTTTTGATCAAAACAACATTGACAACCTAAAACACTGTTTCTGCACTATCAATGTTTTCCTAATTAGGTGCAAACTTGTGCATGAGACTTTCATGTTCCATTTacggatatatatatatatatttattttgaatgcacaGGACAAATTACATGTGAGATCTAAAGAGTAGAGGAGTACCCCTTTATTTATATGCGTGggtgtgtatctatctatctatctatatatatatatatatatatatatactacataaCTGTTAACTGCTGTTAGTCATATTCAGAAGTCCTGTCAAGACATGGTTTAGTAGCCTAAGTTACAACAAAACTTGTTAAAtcgtgtttttttaatgtatttaattttaaaagtgtgGACACTGCCACACAGCTGGGTGTAATATACTTGTGAAATTAtcattaaaacttgtttttgttttgaa
>TU201233
CCGCGCCAGACAAGTTAAAGTCACTTAGctattgcacattttctttttctgtccaAAACCCGCCATCGTTATgtcttcaatacatttttgtagcTTTACTACAAGGCATATTGTTTTTCGAGGTTTGCTTAAGGAACCTGGACATTATGCTGCTTCTTTAAGGCTCGCTAGCTCCACTGCCGATGGTAAACCACAAAGCAAGAATGAACCTTTGAAGAAGCCCAAAACACCTCAGGGCCGGTTTGACAGTCCCGAACAAGCACCTGCTGACAAGGATGTCCTGGAAAGATTTCCTAATGATGTGAACCCGGCAACAAAGGAGAAGGGAGGCCCCCGAGGCCCTGAGCCCACTCGCTATGGGGACTGGGAGAGAAAGGGACGGTGCATTGACTTTTAATCCATTCATAATACACTCATattgtatgaaaatgtaaagggtGTGAGTAATGCATCAtaatacaaaaagagaaaatgtaaatgatttgGTTCTTTTTGATCAAAACAACATTGACAACCTAAAACACTGTTTCTGCACTATCAATGTTTTCCTAATTAGGTGCAAACTTGTGCATGAGACTTTCATGTTCCATTTacggatatatatatatatatttattttgaatgcacaGGACAAATTACATGTGAGATCTAAAGAGTAGAGGAGTACCCCTTTATTTATATGCGTGggtgtgtatctatctatctatctatatatatatatatatatatatatactacataaCTGTTAACTGCTGTTAGTCATATTCAGAAGTCCTGTCAAGACATGGTTTAGTAGCCTAAGTTACAACAAAACTTGTTAAAtcgtgtttttttaatgtatttaattttaaaagtgtgGACACTGCCACACAGCTGGGTGTAATATACTTGTGAAATTAtcattaaaacttgtttttgttttgaactgcttgtgttttccttttttataacatatcatttttatttctgcgTGGAAAAATATTTCTGGCCCGGGACATTGGTTAACATAGCAGGAATAATCTCAATAGAAATGTAACTTAAAACACACccaaaataagtgtgtgtgtatctgtacatCTTGAAAAGGCTAAGGTTTAATGGCACATTTAGTGTAGTACAC

Function

GO: NA

KEGG:

id description
K11503 CENPK; centromere protein K

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001702 True 2676 mRNA 0.39 13 12931426 12937243
TU201233 False 1120 TUCP 0.37 3 12931231 12933668

Neighbor

gene id symbol gene type direction distance location
AMCG00001705 smap1,LOC108236281,LOC106518784 coding downstream 29208 12900485 ~ 12902023 (-)
AMCG00001703 NA coding downstream 60470 12854099 ~ 12870761 (-)
AMCG00001700 NA coding downstream 98897 12825577 ~ 12832334 (-)
AMCG00001701 rims1,LOC102293251 coding downstream 170687 12677472 ~ 12760544 (-)
AMCG00001697 NA coding downstream 267315 12663557 ~ 12663916 (-)
AMCG00001707 adgrb3 coding upstream 252882 13190125 ~ 13191677 (-)
AMCG00001706 NA coding upstream 254521 13191764 ~ 13206374 (-)
AMCG00001712 adgrb3,LOC102785729 coding upstream 287173 13224416 ~ 13227590 (-)
AMCG00001711 NA coding upstream 301263 13238506 ~ 13272755 (-)
AMCG00001713 adgrb3 coding upstream 386655 13323898 ~ 13325020 (-)
G159818 NA non-coding downstream 137670 12787082 ~ 12793561 (-)
G159748 NA non-coding downstream 416153 12513392 ~ 12515078 (-)
G159747 NA non-coding downstream 418327 12512352 ~ 12512904 (-)
G159746 NA non-coding downstream 418952 12511622 ~ 12512279 (-)
G159745 slc17a5 non-coding downstream 420938 12509800 ~ 12510293 (-)
G159904 NA non-coding upstream 813637 13750880 ~ 13751089 (-)
G159995 NA non-coding upstream 1238498 14175741 ~ 14203768 (-)
G160025 NA non-coding upstream 1330144 14267387 ~ 14267741 (-)
G160040 NA non-coding upstream 1373898 14311141 ~ 14316143 (-)
G160080 NA non-coding upstream 1483694 14420937 ~ 14517285 (-)
G159303 NA other downstream 2259990 10670437 ~ 10671241 (-)
AMCG00001628 NA other downstream 2709513 10212874 ~ 10221718 (-)
AMCG00001625 NA other downstream 2965823 9952372 ~ 9965408 (-)
AMCG00001615 NA other downstream 3828197 9074089 ~ 9103034 (-)
G158971 map1lc3c,LOC107701141 other downstream 4390973 8514367 ~ 8540258 (-)
AMCG00001704 fam135a,LOC107601029,LOC107747270,LOC107665594 other upstream 5118 12942361 ~ 12977026 (-)
AMCG00001710 NA other upstream 58394 12995637 ~ 13105424 (-)
G159976 NA other upstream 1210385 14147628 ~ 14151555 (-)
AMCG00001733 NA other upstream 1526487 14463730 ~ 14473159 (-)
AMCG00001756 NA other upstream 1613446 14550689 ~ 14570927 (-)

Expression


Co-expression Network