AMCG00001709 (lmbrd1)


Basic Information

Item Value
gene id AMCG00001709
gene name lmbrd1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 13141097 ~ 13150256 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001709
GCTTATGGTATGTCTGTTCTGCCCCTAAACCTCATCAAAGGGACTCGCAATGTTGTGTACGAGCGCTTGGAAAATACCGAAGACATCGAAGAAGTGGAGCATCAGATTGAGAAGATCAAATCAAAGTGTACCGACGGCCGGCCCCTCTCCTCCAGAGACAGGAAGTCGCTGCACCAGCTGGAGTCAAAGCTACAGGTGCTTCAAAGACGGGAAAGACACTTGGAAGTCGCTGAGAAAACCTGCTGCACCAAAGTCTGTGGTGCCCTTCGACCTTTTAAGattgtCTTTGGACTGTTTTTCATCTTGGTCGCTTTCTTGTTTACCATTGCACTTTTCATATCAAACCTGGATAAAGCTCTTCATTCTGCCGGAATAAACTCTGGATTCATCATCTTTGGGACTAATTTGACCAATCCATTAAACGAGCTGTTGCTAGCACTGCAGCCTGTTTTTCCACTGGATTATGTCTTGATTACtgttattacaatgtatttcgTCTTCACATCCATGGCTGGAATAAGGAATATGGGCATATGGTTCTTCTGGATAAGGTTGTACAAGATTAGACCAGGAAGAACCCGGCCGCAGGCACTTCTCTTTCTATGCATGATCCTCCTGCTGATTGTTCTGCACACAAGCTATATGATATATAGCCTTGCACCTCAATATGTCATGTATGGCAGTCAGAAGTACCTTCTACAG

Function

symbol description
lmbrd1 Predicted to enable cobalamin binding activity. Predicted to be involved in protein localization to lysosome. Predicted to act upstream of or within insulin receptor internalization. Predicted to be located in clathrin-coated endocytic vesicle; endoplasmic reticulum membrane; and plasma membrane. Predicted to be active in lysosomal membrane. Human ortholog(s) of this gene implicated in methylmalonic aciduria and homocystinuria type cblF. Orthologous to human LMBRD1 (LMBR1 domain containing 1).

NR:

description
PREDICTED: probable lysosomal cobalamin transporter

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K14617 LMBRD1; LMBR1 domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001709 True 702 mRNA 0.45 6 13141097 13150256

Neighbor

gene id symbol gene type direction distance location
AMCG00001708 col9a1 coding upstream 129308 12984899 ~ 13011789 (+)
AMCG00001699 b3gat2 coding upstream 288374 12844164 ~ 12852723 (+)
AMCG00001698 NA coding upstream 348266 12787082 ~ 12792831 (+)
AMCG00001695 NA coding upstream 614702 12521489 ~ 12526395 (+)
AMCG00001689 LOC102208791,LOC101485550,LOC101166076,LOC107375892,LOC105023253,LOC107098978,LOC103476462 coding upstream 620392 12517012 ~ 12520705 (+)
AMCG00001718 NA coding downstream 441935 13592191 ~ 13602628 (+)
AMCG00001717 NA coding downstream 468038 13618294 ~ 13661682 (+)
AMCG00001723 NA coding downstream 511525 13661781 ~ 13667350 (+)
AMCG00001719 NA coding downstream 522325 13672581 ~ 13674756 (+)
AMCG00001720 NA coding downstream 546500 13696756 ~ 13702729 (+)
G159798 NA non-coding upstream 264411 12785795 ~ 12876686 (+)
G159800 NA non-coding upstream 330362 12799509 ~ 12810735 (+)
G159775 LOC102207824,LOC102800191,LOC107693914 non-coding upstream 461608 12676811 ~ 12679489 (+)
G159594 NA non-coding upstream 1493645 11625671 ~ 11647452 (+)
G159483 NA non-coding upstream 1701485 11436662 ~ 11439612 (+)
G160024 NA non-coding downstream 1117132 14267388 ~ 14267722 (+)
G160036 NA non-coding downstream 1155769 14306025 ~ 14306260 (+)
G160107 NA non-coding downstream 1375481 14525737 ~ 14526508 (+)
G160116 NA non-coding downstream 1408510 14558766 ~ 14563369 (+)
G160129 NA non-coding downstream 1479047 14629303 ~ 14632490 (+)
AMCG00001691 NA other upstream 807397 12329979 ~ 12333700 (+)
AMCG00001645 NA other upstream 2383239 10747489 ~ 10757858 (+)
AMCG00001643 spred2 other upstream 2463243 10655187 ~ 10677854 (+)
AMCG00001630 NA other upstream 2981271 10157734 ~ 10159826 (+)
G159174 NA other upstream 3226433 9913308 ~ 9914664 (+)
G160026 NA other downstream 1119359 14269615 ~ 14270190 (+)
AMCG00001760 mpc1,LOC107725004,LOC106589821,LOC107693783 other downstream 2181364 15331620 ~ 15334580 (+)
AMCG00001762 NA other downstream 2282081 15432337 ~ 15439031 (+)
AMCG00001814 ryr2,LOC106456445,LOC108410403,LOC106906861,LOC101062804,LOC103129799 other downstream 3087006 16237262 ~ 16377860 (+)
AMCG00001841 NA other downstream 4029338 17179594 ~ 17182601 (+)

Expression


Co-expression Network