AMCG00001710


Basic Information

Item Value
gene id AMCG00001710
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 12995637 ~ 13105424 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001710
ATGGATATGCCGGTGTACCTGTTCCACCCAACCAAGtgtaACTTTAAAGAGCACAGTCTCTTCAATTTCAGGCTAAACCAGTTCAAATTTACAAGAAGCCCATTCACATGCATCAGAGAAGAAATGCATCTCTTGTTGAAATGGACAGTTTTGTTCTGGATTGTAAACACTATTCATCGTGCTTGTGGCATGGCTATCAGTGAAAGGACAGGGTTTGATCTAACAGAAAAGTTTTTACTCCATAAGGGGACGGTCACGGAGGAAAAAGCATCTTTTAGACTTGGAGGCACACCACTTATTAAGCAAACACAGTTGGTGTTTCCAAATGGTCTCCCTGCAGAATTTGCCCTTGTGGCCACATTCAGACTAAGAAAGACTACAAAGAAGGAGCGCTGGTATCTCTTGCAGATTTCGGATCATGGGGGAAGCACACAGGTGTCTTTTGTAATCGACGGAGGCAAAAAAGTGGTGGAATTCACCGCCAGGGGTCTGCTGAAGAACACCCTCCATTACACCTTTAAGAGCCGAGAACTTCACCCTCTTTTCGATCGTCAATGGCACAAGCTGAGCCTCGCTGTTCAGTCCAGCATCATCTCCCTATACATGGACTGCAATCTCATTGAAAGGAGGCTGACAGACGAAAAGGACGCAATCGATGCAGGAGGCAGAACTCTCATCACCACTCGCATCGAGGACGGCAGACCGATTGATATTGAACTTCAGCAAATAATAATCTACTGTGATCCAAAAATGGCAGAACAGGAAAACTGCTGTGAGATACCAGGTAACCAGgGGGAACAAGGGCTACCTGGAGTGATGGGACTTTCTGGACAGAAAGGTGACAAAGGTGACAAGGGAGAGCCGGGACCTGCAGGGAATGATGGGATCAATGGCACGAAGGTGATCCTGGACTTCAAGGTCTTAGTGGCCCTAAGGGTGATAAAattgAAAGTACAGGACGAAAGGGAGATCAAgGTTTGCCTGGACTCAAAGGAGAGAAGGGACCAGCAGGGCCACCAGGTCACCCAGGGCCTGCAGGCAAAGAAGGTCAAAGGGGTCGGAGAGGCAGGCCAGGTGTTGATGGGAAACCCGGACCACCAGGTCCTCCGGGAGTATCTGCAGTGGAAGGAGCAGGGAACAAGGGGGAAAAGGGAGACCCTGGGAAAGACGGGGGTGAAACAGGAAGTAGTGGAGCAAAAGGAGAAAAgGGGGAAGTTGGACCGAGTGGCCCACCAGGACCTGGTGAAATGGGAGAAAAGGGACAGAAAGGAGAAAAGGGAGATGATGGGGAGAAAGGAGAGCTCGGACCCGAAGGCCCAACAGGAAGCCCGGGGCGAGAGGGACCGCAAGGAGACCCGGGAGTACCAGGAGCAGAGGGGCTCAAGGGAGAAAAgGGAGAAGGGACACCTGGTCCAAGAGGATCTCGGGGGCCAAAGGGAGAGAGGGGCGTCCCGGGAGTGCCAGGAGAACCAGGGGAGAAGGGAGAACCTGGGCTGGGCCTCACAGGACCTCCCgGCCAAGCGGGACTTCATGGGGAGCCAGGTATTCAGGGGCCTCGGGGACCCCCAGGCCTACCTGGACCTGCAGGAAACCCTGGGAATGATGGAGAACCAGGCCTTCGAGGGCCACCGGGGAACCCTGGCAGAGAAGGCCCCAAGGGCTCCCCAGGCGTCCCAGGATTCCCGGGACCCTCTGGCCGCACTGGATCTCCGGGCAGCGAAGGACCACCTGGCAGACCAGGGCTTCCCGGACCCCCCGGAGGCGCAGGCGGTACTGGTTATCCGGGCCCACCAGGAGCTCCTGGAGACCCAGGTGTACCAGGTCTCCCAGGTGATCCTGGCACACCAGGAAAGAACGGAGCTCCAGGTACCCCCGGACTCCCAGGAGATCCCggggagagaggacCTGTGGGAGAAACTGGATTTCCTGGGCCGGAGGGACCTCCCGGTACTCCAGGAGCCACTGGTCGTCCAGGAGACAGAGGCTCAAAAGGAGAACGTGGAGATCCAGGGATTCCCGGAGAGCGAGGTGTTCAAGGGGAAAGAGGGAGAACAGGTGACAAAGGGGACACAGGACCTCGAGGGCCACTCGGGCCACCAGGACATAGAGGAGATCCCGGCCCTCCAGGACCTCTCGGGTCACCAGGTCCTCCAGAGTGATGTGGATTCATTAgaggaaataaaaagatttaTCCGTGAAGAAGTCTTACGGGTCTTTGAAGaGAGGTTATCTGGCTACGCTCCACAGATGAAGACCCCTGCGGCAATCCTGGCAGCTCAGAGCAGGCCTGGGCCCCCCGGACCCCCTGGCAAAGATGGCTCACCTGGACCCCCTGGGGAACCTGGGCCACCAGGATCACAAGACAATTTCTGGGGTATCGTGGtcagaaaggagagagaggtcaACCAGGCATTGGGCTGGACGGAGCACCTGGTCCAACAGGGCCACCAGGTGTGCCTGGAATTGGCATTGCCGGACCTCCAGGGTTACCAGGCCCAACAGGCCCACAAGGTCCCCAAGGGCCTCATGGGAAATACAGTGGTGAGGCGATGGCTTGCAAGTTGCATGCTGATGGGTCACAATAGCCATTCGGGCCAGCGGGGCCAGGAGGACCAGGAACGCCAGGTTGTCCAGGCAAGCCTGGGGGACCGGGGAGGCCTGGCAGACCGAGGCAGTACTTACAGGAAGCCCCTGCAGGCCTACTTCTCCTGGAGCTCCCGGCTTCCCACTGTTGCCctaaaacaggaaacagatcAAAGGCTGAGTCAGTGGGACCCTGTCGTAGCAGATTCGGTAAGAAAGTTCAGAGGCAAAGACATGGTGAAAAAGCACTTACAAAGGCGCCTTGAATGCCCCGAGGGCCCGGCTCCCCGTCGTGTCCGCGGGGCCCCTACAGAGGAAGGCGGTTGA
>TU201247
CCTGGCAGACCGAGGTCACCTTTTGCTccACGGGGTCCTGGGAATCCGGGGCCGCCTGGGGGACCCTGCTCGCCTCTCTCACCTGGCCCACCTATTGGTCCGATCGGTCCTACTTCTCCTTGCTCTCCTCGCTCTCCAGTTTTACCCGAAGATCCCATTGTTCCAGTTAAACCAGGGTCACCAGAACTACCCTTCTCACCAGCAACTCCTTTCGGGCCATAACTACCAGGCAAGCCAGGAAGCCCCTGCAGGCCTACTTCTCCTGG

Function

GO: NA

KEGG:

id description
K24340 COL19A; collagen type XIX alpha

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001710 True 2910 mRNA 0.56 43 12995637 13105424
TU201247 False 266 lncRNA 0.60 6 12997408 13001264

Neighbor

gene id symbol gene type direction distance location
AMCG00001705 smap1,LOC108236281,LOC106518784 coding downstream 93614 12900485 ~ 12902023 (-)
AMCG00001703 NA coding downstream 124876 12854099 ~ 12870761 (-)
AMCG00001700 NA coding downstream 163303 12825577 ~ 12832334 (-)
AMCG00001701 rims1,LOC102293251 coding downstream 235093 12677472 ~ 12760544 (-)
AMCG00001697 NA coding downstream 331721 12663557 ~ 12663916 (-)
AMCG00001707 adgrb3 coding upstream 84701 13190125 ~ 13191677 (-)
AMCG00001706 NA coding upstream 86340 13191764 ~ 13206374 (-)
AMCG00001712 adgrb3,LOC102785729 coding upstream 118992 13224416 ~ 13227590 (-)
AMCG00001711 NA coding upstream 133082 13238506 ~ 13272755 (-)
AMCG00001713 adgrb3 coding upstream 218474 13323898 ~ 13325020 (-)
G159818 NA non-coding downstream 202076 12787082 ~ 12793561 (-)
G159748 NA non-coding downstream 480559 12513392 ~ 12515078 (-)
G159747 NA non-coding downstream 482733 12512352 ~ 12512904 (-)
G159746 NA non-coding downstream 483358 12511622 ~ 12512279 (-)
G159745 slc17a5 non-coding downstream 485344 12509800 ~ 12510293 (-)
G159904 NA non-coding upstream 645456 13750880 ~ 13751089 (-)
G159995 NA non-coding upstream 1070317 14175741 ~ 14203768 (-)
G160025 NA non-coding upstream 1161963 14267387 ~ 14267741 (-)
G160040 NA non-coding upstream 1205717 14311141 ~ 14316143 (-)
G160080 NA non-coding upstream 1315513 14420937 ~ 14517285 (-)
AMCG00001704 fam135a,LOC107601029,LOC107747270,LOC107665594 other downstream 18611 12942361 ~ 12977026 (-)
AMCG00001702 NA other downstream 58394 12931231 ~ 12937243 (-)
G159303 NA other downstream 2324396 10670437 ~ 10671241 (-)
AMCG00001628 NA other downstream 2773919 10212874 ~ 10221718 (-)
AMCG00001625 NA other downstream 3030229 9952372 ~ 9965408 (-)
G159976 NA other upstream 1042204 14147628 ~ 14151555 (-)
AMCG00001733 NA other upstream 1358306 14463730 ~ 14473159 (-)
AMCG00001756 NA other upstream 1445265 14550689 ~ 14570927 (-)
AMCG00001771 banf1,LOC105900308,LOC107086546,LOC106536379,LOC106576720 other upstream 2394129 15499553 ~ 15501793 (-)
G160255 NA other upstream 2398887 15504311 ~ 15520639 (-)

Expression


Co-expression Network