AMCG00001717


Basic Information

Item Value
gene id AMCG00001717
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 13618294 ~ 13661682 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001717
TTCAGTGGGCATTTCTGTGAGATAAATGTAAATGAGTGCGACTCAGAGCCCTGTCAGAATGGCGCAGTGTGTTTGGATGATGCCAACCGATACCTTTGCTTTTGCCCAGAAGTAAATTATTGCACTAATGTTTATGATGACAACACAGAAATCTTGATTAAAGTTTGTTATACTGACCCATCCTGTTTCTGGTTGTTGATGGGATGTTTTTCTCCCCGAAACGTAGGCTTCGAGGGCCTCAACTGTGAAATTAACTTTAATGAATGTGATTATGGATTCTGCACAAACAACTCAACTTGTATTGACCTAGTTGCTGACTATAAATGTATTTGCCCCATGGGCTTTACCGATAAAAACTGCTCAACTGAGATAAACGGATGTGCTGAGCCATGCCCAAACGGGGGCATGTGTTACAGTCTGCTTGGAGAGTATCGTTGTGTCTGTGCACCAGGATCTGAAGGTGATGACTGCTCTGTACCAGTGAATGAATGCATCTCAAATCCGTGTGACCCTAGAGGAAACCTCTACTGTGAAGATCTTGTGAATGGCTTTAAATGTGTCTGCCAACTTGGATATATTGGACAGCTATGTGAAATTCCCATAAGTCATTGTATAGATGGACTGTGTCATTATGGATCAAAGTGTGAAGATCTCCCTGGAGGATTTGTGTGCCAGTGTTTACCTGGGTTAACAGGACATTTCTGTGAAGTAAACATTGATGAATGTCAAGAGATACCGTGTGGAGCTCTAAGTATTTGTAAAGACTCCCTGAATGCATACGAGTGTTTCTGTGCACCTGGATTTATAGGCAATAACTGTGAGATTGAAGTGGATGAGTGCCGAAGTGACCCCTGCCACAATGGTGGCACTTGCTCTGATGAGTTAGATGCCTTCAGCTGCCGGTGCCCTGAGGGAATTGAAGGAAACTCTTGTGAAATCAACATAAATGAATGTCACTCATCCCCTTGTCTCCATAATGCAACGTGTATTGACATTATCAATGGCTATGAATGCATCTGCCTACCAGGCTTTACTGGCCCAACATGTGAAATTGACATAGATGAGTGTGCTTCTTCTCCCTGCAAGAACGGAGCCACTTGCATTGACCAACCTGGTAATTACTTCTGCCAATGTGTGGCTCCATTTAAAGgcCTGAACTGTGAATTCAGGCCATGCGAGGCCAGTAATCCTTGTGAGAACGGGGCCGTGTGCATGGAAGAGATGGACCTGGACGCATTTCCCCTCGGATTCAGCTGTCAGTGTGTGAAGGGCTTCGCGGGCCCACGCTGCGAGATCAACGTCGACGAGTGCAGTTCCAACCCCTGCCTCAATGGGTACTGCTATGATGGTGAGTTCGGCCTGGCTGGTGGATTCTACTGCCTTTGTAACCCAGGATATGCTGGAGTGAGATGTGAACAAGACATTGATGATTGTGTTAACCATTTATGTGAAAACAACTCAACATGCATGGATCTTCATTTGAGCTACAAGTGCCTCTGCCTTCCTGGATGGGAGGGGGGCTTCTGCCAGCGAGAGACAGATGAGTGTGTGTCACATCCCTGCAAAAACAATGCGGCGTGCACTGATCTCTTCAACGGCTACAAATGCACGTGCGCTCTCGGGTGGACGGGGGCAGACTGCGCGGAGGATGTGAATGAATGTGAATCTCACCCTTGTCTGAACGGAGCCAAGTGCGTTGAATCTGCCATCCCGGGGAAATTTAAGTGCATCTGCCCCCCATTCTTCACCGGTGACTTGTGTAAACAGCCCTACGATCCTTGTGACACACACCACAATCCATGCATACACAATTCAACCTGCTTGACACAGATCGACGGGACGGCAATCTGCATCTGCCAGCAGGGATTTGAAGGTACTCACTGTGAAATTGACACCAATGAGTGCATCTCTGGCCCCTGTCAGAACCAGGGCCACTGTCTGGATGGGGTCAATCGTTACAGCTGCGAATGTAAGCCTGGATTCTCTGGTCCTCGCTGTGAGGAGGACATCAATGAATGTGCTTCAAGTCCATGCAAAAATGGAGGAACCTGCCAGGACCTTATCAATAgTCTTTTGGTTTTAATCCCACCTGCGCTTCTCTCTGCAGGTTCCGTTGCCGTTGCGTACCGGGCTACTTCGGATCCCTCTGCGAGTACACCCTCTTCCCAGAATGTGAAAATCAATGAGCTGTACTCCAGCTATTGCTTGTCATGTTTGCTGCAAGACTGTCATGATCGCTGCAGGGCCGTGGTATTTCTTTGCAAAGAACACAAGCAGCCGTCTGAGTTTATGGCTTCCCCTCTGCTTcttgctgtgtgttttaatgtggctttatttaattatttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001717 True 2346 mRNA 0.47 17 13618294 13661682

Neighbor

gene id symbol gene type direction distance location
AMCG00001718 NA coding upstream 15666 13592191 ~ 13602628 (+)
AMCG00001709 lmbrd1 coding upstream 468038 13141097 ~ 13150256 (+)
AMCG00001708 col9a1 coding upstream 606505 12984899 ~ 13011789 (+)
AMCG00001699 b3gat2 coding upstream 765571 12844164 ~ 12852723 (+)
AMCG00001698 NA coding upstream 825463 12787082 ~ 12792831 (+)
AMCG00001723 NA coding downstream 99 13661781 ~ 13667350 (+)
AMCG00001719 NA coding downstream 10899 13672581 ~ 13674756 (+)
AMCG00001720 NA coding downstream 35074 13696756 ~ 13702729 (+)
AMCG00001716 NA coding downstream 87229 13748911 ~ 13778516 (+)
AMCG00001724 NA coding downstream 150335 13812017 ~ 13814732 (+)
G159798 NA non-coding upstream 741608 12785795 ~ 12876686 (+)
G159800 NA non-coding upstream 807559 12799509 ~ 12810735 (+)
G159775 LOC102207824,LOC102800191,LOC107693914 non-coding upstream 938805 12676811 ~ 12679489 (+)
G159594 NA non-coding upstream 1970842 11625671 ~ 11647452 (+)
G159483 NA non-coding upstream 2178682 11436662 ~ 11439612 (+)
G160024 NA non-coding downstream 605706 14267388 ~ 14267722 (+)
G160036 NA non-coding downstream 644343 14306025 ~ 14306260 (+)
G160107 NA non-coding downstream 864055 14525737 ~ 14526508 (+)
G160116 NA non-coding downstream 897084 14558766 ~ 14563369 (+)
G160129 NA non-coding downstream 967621 14629303 ~ 14632490 (+)
AMCG00001691 NA other upstream 1284594 12329979 ~ 12333700 (+)
AMCG00001645 NA other upstream 2860436 10747489 ~ 10757858 (+)
AMCG00001643 spred2 other upstream 2940440 10655187 ~ 10677854 (+)
AMCG00001630 NA other upstream 3458468 10157734 ~ 10159826 (+)
G159174 NA other upstream 3703630 9913308 ~ 9914664 (+)
G160026 NA other downstream 607933 14269615 ~ 14270190 (+)
AMCG00001760 mpc1,LOC107725004,LOC106589821,LOC107693783 other downstream 1669938 15331620 ~ 15334580 (+)
AMCG00001762 NA other downstream 1770655 15432337 ~ 15439031 (+)
AMCG00001814 ryr2,LOC106456445,LOC108410403,LOC106906861,LOC101062804,LOC103129799 other downstream 2575580 16237262 ~ 16377860 (+)
AMCG00001841 NA other downstream 3517912 17179594 ~ 17182601 (+)

Expression


Co-expression Network