AMCG00001727 (prim2,LOC107743543,LOC107725490,LOC107676604,LOC102784181,LOC108443732,LOC108263846)


Basic Information

Item Value
gene id AMCG00001727
gene name prim2,LOC107743543,LOC107725490,LOC107676604,LOC102784181,LOC108443732,LOC108263846
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 13978613 ~ 13985327 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001727
TTTGACAAAGCATATGCCTACAGCATCCGACACATGTTCGGGAAGGAAGGGAAACGCACTGACTACACCCCCTACAGTTGCATGAAGGTTATTTTGTCAAACCTCCCGAGCCAGGGAGACTATCATGGGTGCCCATTCCGCCATAGTGACCCCGAGCTACTGAAGCAGAAGCTGCAATCATATAAAATCTCCCCCAGTGGAATAAATCAGGTCCTGGATTTAGTCAAGGGGATGCACTATCAGCTGGCCTGTCAGAAGTACTTTGAGCTGACGCACAGTATCGAGGACTCTGGGTTTTCCCTAAATCACCCAAATCAGTACTTTGTAGAGAGCCAGAGGCTGCTGAATGGCGGGAAGGAGGTGAAAAAGGAGACGTCCCAAGCTGATGCTCCACAGCGAGGGCCGAACAACCCAGCGCCCAAACCCACCACCGCCTCCCCGGAGAAGCCTGCCACCCCCACCACAGCACCGGCCGCCGAGGAAACAGAGGAAGACTTGGATACCTTCTTTGCAGAATATGAATGA

Function

symbol description
prim2 Predicted to enable 4 iron, 4 sulfur cluster binding activity; DNA binding activity; and metal ion binding activity. Predicted to act upstream of or within DNA replication, synthesis of RNA primer. Predicted to be part of alpha DNA polymerase:primase complex. Orthologous to human PRIM2 (DNA primase subunit 2).

NR:

description
PREDICTED: DNA primase large subunit-like

GO:

id name namespace
GO:0006269 DNA replication, synthesis of RNA primer biological_process
GO:0003896 DNA primase activity molecular_function

KEGG:

id description
K02685 PRI2; DNA primase large subunit

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001727 True 525 mRNA 0.53 4 13978613 13985327

Neighbor

gene id symbol gene type direction distance location
AMCG00001715 NA coding downstream 69643 13823609 ~ 13908970 (-)
AMCG00001722 ptp4a1 coding downstream 173708 13798387 ~ 13804905 (-)
AMCG00001721 NA coding downstream 182548 13779284 ~ 13796065 (-)
AMCG00001714 NA coding downstream 568102 13409477 ~ 13410511 (-)
AMCG00001713 adgrb3 coding downstream 653593 13323898 ~ 13325020 (-)
AMCG00001728 NA coding upstream 53543 14038870 ~ 14041180 (-)
AMCG00001726 NA coding upstream 72349 14057676 ~ 14059726 (-)
AMCG00001729 NA coding upstream 74906 14060233 ~ 14069875 (-)
AMCG00001744 NA coding upstream 355431 14340758 ~ 14343171 (-)
AMCG00001743 hcrtr2,LOC107699124,LOC107597943 coding upstream 362766 14348093 ~ 14359579 (-)
G159904 NA non-coding downstream 227524 13750880 ~ 13751089 (-)
G159818 NA non-coding downstream 1185052 12787082 ~ 12793561 (-)
G159748 NA non-coding downstream 1463535 12513392 ~ 12515078 (-)
G159747 NA non-coding downstream 1465709 12512352 ~ 12512904 (-)
G159746 NA non-coding downstream 1466334 12511622 ~ 12512279 (-)
G159995 NA non-coding upstream 190414 14175741 ~ 14203768 (-)
G160025 NA non-coding upstream 282060 14267387 ~ 14267741 (-)
G160040 NA non-coding upstream 325814 14311141 ~ 14316143 (-)
G160080 NA non-coding upstream 435610 14420937 ~ 14517285 (-)
G160085 NA non-coding upstream 488915 14474242 ~ 14480359 (-)
AMCG00001710 NA other downstream 873189 12995637 ~ 13105424 (-)
AMCG00001704 fam135a,LOC107601029,LOC107747270,LOC107665594 other downstream 1001587 12942361 ~ 12977026 (-)
AMCG00001702 NA other downstream 1041370 12931231 ~ 12937243 (-)
G159303 NA other downstream 3307372 10670437 ~ 10671241 (-)
AMCG00001628 NA other downstream 3756895 10212874 ~ 10221718 (-)
G159976 NA other upstream 162301 14147628 ~ 14151555 (-)
AMCG00001733 NA other upstream 478403 14463730 ~ 14473159 (-)
AMCG00001756 NA other upstream 565362 14550689 ~ 14570927 (-)
AMCG00001771 banf1,LOC105900308,LOC107086546,LOC106536379,LOC106576720 other upstream 1514226 15499553 ~ 15501793 (-)
G160255 NA other upstream 1518984 15504311 ~ 15520639 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_13102619_13168566 PRIM2 coding CI01000012 null 13102619 ~ 13168566 (+)