AMCG00001729


Basic Information

Item Value
gene id AMCG00001729
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 14060233 ~ 14069875 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001729
ATGGCGCAGCTTGCGATGCcagcagcagaaaaacaaaatcgtGGCGATAGTCCCCAGCAAGAGCAGCAGCAAGAGCAGGACACACTGGATACTGTAAGGTCTCAGCAACACCAGAAACGCCGCGGCGATCATCCTAAGCCGAGATGCGGGGACGGCACCGCTGCCCCCTCAGAGCTGAGCCTGCTTTTCGGATCTGGAGCCCGGGAACCCGCAGAGCAGTCTTGGAGGGGATTGATTTCAGTGATGTCCACAACCCATGAGTCAGCAGCACAGAGCAAGCCGGCAGTTTCTCCCGCATGCAGGGACCCGGCGGAGAGCAGCTGCATCTGGGCTCGGCAGGGCTGCAGCAGACGGAGGAGACACAGATGTTCATGGTGTTTGGTGATGTCGGCACCAGCTTTGCAAGGGGACTCTGATGATGAAGTGGAGTTTATTTCAaaaataaagaatgaagaCCGTGTTGACAGACAGAAGGCGAAAGTTGAATCGACACTGGATCGACTGGCTCGCCATGTAGCTGTAGAGAGAAGTGAGCGCGAGCAGAAGTGCAAAGCCTTCAAGGAGAAGGTGGACTCTCAGCAGGCACATGGCCTCCAGGAACTGGAATTCAATCAAGGAAATTGTAACAATGCTGCCAAGCGCTGTGTGGACGAGTGGCTGAAAATGCCTGGACTAAAACCTGGTGCTTTAAACTGGAAATCCAAATTCGCTCAGAGGGCCCTACCACTGTCCTCTCCTTGTGTCAAGCAAATCAATTGTCCCATCATGAACTGCAACAGAATGTTTGACAATGGACCTCTACTCATGGGTCACCTTAAGAGGTTTGACCATTCTCCGTGTGATCCCACCGTGACACTCAAGGGAAGTCCTCACATCTCCTTTGCCTGCATTGCTTGCTGTCGGCGATACCCATCGGAGAAGCAGTACAAGGAGCATCTGTTAGCTAAGACCTCGTCTCCTGATGCCGAGGGCCACGTCAGCACACTGTCTGCGCAGAGCGTCCAGTGCTTTGCCTGTCCTTCCTGTTACCTCCTTTTCAACATAAGGGACGAATGTTTGCAGCACATGTCCGCCAAAAATCATTTCGCCCATTCTATCAGACTCAGCGataagAACGATGTACCAGCTCCACTTCCTATTCCATTGTACGCAAAGAATCTGCTCATAGCTCTGTGCAAAAATGTGGCTTTCTCAATTAAATGCACAGCTTGCAAGAAGGTTTTGAGCTCACATATGGAGGTGACTGCACATTTTAAGGCCCATTGCCGGAATGCTGGTCCATTGGCTGAAGCGGAGAAAACTGTGGCCCAGGTTGTGGAGGTGCTCAAGCTCAAAGGATATTGTTCTGTGTGCTGTAAGATATTCCGGAACGACTGTAAAATCGTACAGCACGAGCAGTTGACTTTACACAGGGTTGAGATCATCTCCACCATGGAAAAGGCCATCTTGCACTTCTGCAACttctttgaaaataacaaaaatccgCACAAGACCGAGGCTTGGTTTAGAGAGCCCAGAAGCACGTTGCTCAAGAGGCCTCCGGCCGAGGAGAGCGAGAACAACCGTCCCGACGCCTCCAGAGCCAAACGGCAGAGAGTGGCGACGTCTTCGAGTGCGGGGTCCGTATCGGAGGACCCCGGCCGAGAGGAAGCAACTGGATCGCAGCTGAAATCCACCACGACGGCCTGGTTCTGTGAGTGTGGCCAGCGTTTCAGTGTGGAGAGTGCGGCCGAGAGGCACATCACGGCGGTTAACCAGATATTTTgcaggtgctgtgtgtgtgggaagcAGACCTCGGAGGGGTCGGTCATGGGGTTACACATGAGCCGCTTCCACGGCGGGGCCCACCTCAACAACTACGCGTTCTGGTGTCAAAAGTGCAAGATCCAGATGCCTCGGAAACAGGACATCATGTCTCACGTGAGTGACTGCCACAGTGGCCACACGTACTACAATGAGAGGAAGTGGTGGGAGGAGAAATCCACTCCCCAGTCCAGCTCCATCGTGGAAACCGCAGGcgtggaggagaaggaggagcctCGTGGGCGATGGATGTGCAGGATGTGCGAGGATCTCTTTTCTTCTGAAACCCTGGCATACGCTCACTGCAAAGAGATTAAGATCCATAGTTTCCAGAAGTACATTTGTGGTGACTGTAAGCAGAAGTTCTTGAAGGTGGACACCTTGCGCCATCACATCAAAGATGTGCACAAGGGACAGCTGGACGTCAAATACTTCTGTGGTCTTTGTGACAGCATGGAATATGACACGGAGGAGGAATTCCAGGTTCACTACCAGTCCTACCACAGCAAAGACTATGTCGTCATGAAGGCCTCACCCGAAGAGAGACCGGCACGGGACGTCCGGACCTGTCCCTGCCGGAGTTCCAGCAAATCCAAGCGGAAGGCGGTGTTTGACCAATGCGTCGCTGCTCTGTTTGAAAAAGGCAAGGTGAAGTACAGCTGCCGCAGATGTCACGTGACGCAGGACACTGCCGAAGAGATGCAAGCCCATATTGATGAGACTCACAAACCATGCGGttccaaaaaaaagacaaattattcTAAGGTGAGATGTCTATGCTGCATGAAGTTGTTTACAGGACCCTTTGACTTCCATCTGCACTATCACTCAAAGCATTGCCATCTTGAGCCTTGTGTTTCTGGACCACATAGAGCAGAGGCCCCACTGTCCACTCCAGAGAAGGCGAATGGATCGGGAGTTCCTGCTGAAGCAAACGAGCTTGAAGACCTGAAGCGTGCGGTGGCTCTGAGCTTACAAGAGGCAAATGAGGTGATGGAGAGTAACAGAGAAATTGAGGAAATTCTCCAAAGAAGCCTTGAGGAATTCTGATTGGAGAGAACAGCCTTTCCTATTGTTCAGTGCTTTGCATTCCTGAAACATGTATGCgaatgttaaaatatgtatacatctatatatGAGATCTTGGAcgtaataaataagtgaaaacggttgttttttttggtttaaatgtcTATGTTCagatattatgtttttcaatgtcTTTTAAGTTTTTCCCATTTTAAGGAACATTTCAAAGTATGTATTTGAATAAGGCATTCCAGTAATACACAGATGCTTTGCAGAAAGACTGGGGGTAGGGGTTTAATGCATGCCTGTACCTCCATCTGTAATACCGTCACCGAATAACTTCAGTACAACTGCCTGAGCAAAGATTTGTATGTCCaattgtactgtaaataaacGAATGCGGTTGATCATGCTAAAATTGTAACTGGTTTTACTGCAGAAGACTGCTCGAATGATACTGATAAAATAAAACGATGGCAGGCTCTGGAAATGTGAGATGAAATGCATCCATTGTCGTTTTTTAACCGATGTGTAACAGACGGGCCCATGCCAATCagttctgttgtttgtttggtttcttttaacACGCTTGTTGCTGAGAGAAGTATACTAATAAAGAATTTGCAAAAA

Function

GO: NA

KEGG:

id description
K25176 ZNF451; E3 SUMO-protein ligase ZNF451

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001729 True 3462 mRNA 0.49 11 14060233 14069875

Neighbor

gene id symbol gene type direction distance location
AMCG00001726 NA coding downstream 507 14057676 ~ 14059726 (-)
AMCG00001728 NA coding downstream 19053 14038870 ~ 14041180 (-)
AMCG00001727 prim2,LOC107743543,LOC107725490,LOC107676604,LOC102784181,LOC108443732,LOC108263846 coding downstream 74906 13978613 ~ 13985327 (-)
AMCG00001715 NA coding downstream 151263 13823609 ~ 13908970 (-)
AMCG00001722 ptp4a1 coding downstream 255328 13798387 ~ 13804905 (-)
AMCG00001744 NA coding upstream 270883 14340758 ~ 14343171 (-)
AMCG00001743 hcrtr2,LOC107699124,LOC107597943 coding upstream 278218 14348093 ~ 14359579 (-)
AMCG00001731 NA coding upstream 295572 14365447 ~ 14380677 (-)
AMCG00001732 NA coding upstream 328660 14398535 ~ 14421490 (-)
AMCG00001735 NA coding upstream 355400 14425275 ~ 14431342 (-)
G159904 NA non-coding downstream 309144 13750880 ~ 13751089 (-)
G159818 NA non-coding downstream 1266672 12787082 ~ 12793561 (-)
G159748 NA non-coding downstream 1545155 12513392 ~ 12515078 (-)
G159747 NA non-coding downstream 1547329 12512352 ~ 12512904 (-)
G159746 NA non-coding downstream 1547954 12511622 ~ 12512279 (-)
G159995 NA non-coding upstream 105866 14175741 ~ 14203768 (-)
G160025 NA non-coding upstream 197512 14267387 ~ 14267741 (-)
G160040 NA non-coding upstream 241266 14311141 ~ 14316143 (-)
G160080 NA non-coding upstream 351062 14420937 ~ 14517285 (-)
G160085 NA non-coding upstream 404367 14474242 ~ 14480359 (-)
AMCG00001710 NA other downstream 954809 12995637 ~ 13105424 (-)
AMCG00001704 fam135a,LOC107601029,LOC107747270,LOC107665594 other downstream 1083207 12942361 ~ 12977026 (-)
AMCG00001702 NA other downstream 1122990 12931231 ~ 12937243 (-)
G159303 NA other downstream 3388992 10670437 ~ 10671241 (-)
AMCG00001628 NA other downstream 3838515 10212874 ~ 10221718 (-)
G159976 NA other upstream 77753 14147628 ~ 14151555 (-)
AMCG00001733 NA other upstream 393855 14463730 ~ 14473159 (-)
AMCG00001756 NA other upstream 480814 14550689 ~ 14570927 (-)
AMCG00001771 banf1,LOC105900308,LOC107086546,LOC106536379,LOC106576720 other upstream 1429678 15499553 ~ 15501793 (-)
G160255 NA other upstream 1434436 15504311 ~ 15520639 (-)

Expression


Co-expression Network