AMCG00001731


Basic Information

Item Value
gene id AMCG00001731
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 14365447 ~ 14380677 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001731
CCTCCCTCTACTGCTCAGTGCTTTACCACCTAGTTTAGTCTTTGTTCCTTTGTAGGTAGCAAAGTCCATAAGTATTCCTTTTTGTATTCCCAATTTGTATATATCTTATACGTTTGAATGTATCTGAAGACATGTAATGTCTAATGGGAATTTACAAGATTATGAAGACGATGTGCCTTTGACAATGAAGAAGTGCCCCATATTAGCATCCTGATGTTCATTAAAGGAGTTGCTGCTTGATATTACAGTGATAATGGAAACACTATCACTGCTATCCTCTCTAAAAGGAGAGTTCAAGCCAGAGGATTACGTTCTACCACATTACAAGGAGTCCTATCGTCTGGCCATAGATGCTCTGGTGAAGGGAGGGAAAGAAAGTTATCAGGAATTCCTCTCGTCTGAAAACATCGGGGACTTTCTCTCTGAAGAGGAACTCGAGTTCATCCTAGATCATGCCGCCAGGGCCCTTGACGTCAATGCCTCTGAAGACAGTGAGCTCCTGCAAGACGACACATCCTCCACAGGGACATACTGGCCAGTGGAGTCTGACGTGGAAACACCAGACCTTGATCTGGGCTGGCCAGAGGTCCTACCTGACCAGCTGACCCGAACCCACATAGATCTGTTTTTCCACCCACCTCGACAAAACTGCCCAACCATAAAAGAAGTCGTAAGAAAACACATTCAAGATGCAAGGAAGGTCATTGCAATTGTCATGGATGTTTTTACTGATGTGGATATATTCAAGGAGATTGTAGATGCTTCAGTCCGGGGGGTTCCTGTGTACCTGTTACTTGATGACTATCAGTTGAAGAGCTTCCTAACTATGGCTGAAAAACAAGAAGTACAAGTCCAGAGACTAAGAAACATGAGGGTACGCACAGTAAAGGGCCAGGAATACATGTGCAGATCAGGTGCCAAATTCTATGGAGCAATGGAGCAGAAGTTTATCTTGATTGACTGCCTCACGGTGATCTACGGTTCATACAGtttcaTGTGGTCCTTTGAGAAGATCAATCTCAGCATGGTGCAAGTAATCACAGGCCAACTGGTCCATTCTTACGATGAAGAATACAGAATGCTGTTTGCACGTTCCACGGTCCCCGACGCTTTTGCTCCAGAGACTGTGCTGCTGGACAGAAAGCACGACAGATGGCAAAATGGAACCAACTCTGTGACCTCGTATGTTTCGCATTGTGGCCAACCGTTTGAGCGAAGAGACAAGTTGAGACATACCCTCGACACGGTTTACATGAAAGCCTGTGGAAGACAGCTCAATGTAAAGAACAACATGGAAGACTATGAAGAGGACCCATATCAAACGAGGACTTCTGGGTACAGACCAGCAATCAAAACAGGATATAACATACAGAGCCGTATCCAGCAACTTCAGTCTTCGGAGACTAATAACTTCCTGAAAAGACACAGTTATGCTggagagaaacaggaaatctCCTACCTTCCACACCGGAAATATTTAGCAAGTAATTGGAATGTGGCAGCAGCAGTGGACAATCCCCCTGGGAGACACAATTACCTGTCTGGAGGTGCAGGGGATCAGTACCACCAAGGCAGACTAAACCAACCATACAACAGGAATACAAATTTCCGACAGTCATTTCACGGTACTGACAAGCAAGTTCTTTCTTTGCAGCAGAACATGCCAACCCTCGAGCGCACGGCGAAGTCCTTCTTACGAACCTGGCGGATCGAATCGTACCTCAACAACAGTGACTTTCCTGGTGGGGACTCTGGAGACTACTTAGACCATGCAGCCATGCAATATGAGGGTTTAGATTCCAAAGATGGCAAACAGAATCCTCTTTACATGCATTCCCGCCTACGGTCTTCCCTCGTTTTCAAGTCAACGATACCGGAGCAGCCAGAATCGAACAGTTTTACAGCCAACTCATCTTCCAGACCGAACAATGATCTAGCTGCCCCCTCCGGCAATAAGTTTTACTCCGCTGTGCAGAGGAACCCAGTAATACAAGTAGAAAACCGAATGAGGCAGGATGATAACTACATGCTAAAAAGGCGTAGTTTACAGATCTACGATGAGCCCAAAACAAATATGAACTATGGCACTGGTAAAGACCCCTATCACTCTGTTTACTCTTCCTATAATAGACCATCAGCCAATAAGCCCGATGTTTTACATCAGGAAAACACCTATGCTTATAACAGGCATAACGTGCATGATTCAAGGCCAAATGCGGACTATAGATCTGACAAACAATCATCAAGCTACATGTATGGAAGTTTAGGCCGAGGACAGACTGAAACTAATGCCAGGAATGAGAGTGAAAGGTATGGCCAATATACGGCTGTGCCTCACCTGGATGGACTCAGGTCTTCCTCACAGCATGATGTCAATAGCGATGACAATAAAAATCAGCTTTCAATTCCAAACTTGCAAAATCCGCCATCAAGAACTGTATCTGTTACTTCTATGGAAGAGAATAAACAGCCTTCCCTGAAGTCTAATAAAAGCGGGCAGAGTTCCCCACGCTTCTTTAAAAGGAgcacaaagaaaatcaaatccCTCCTTAGTTTAACGGGAAAAgatacaaaaagcaaaaacgGCTCAACTAATATGATCTGTAGCAGCAGTACGGACACGTTGATATCGGATGACGATGAACAGAATCCCAAATCAGGCAAAGGGAAGAAAATGAACAGCACTGAGGCGAACTCCATCAAATCTCTTGGTCACAGCAGTCCCGTCAGGATAAATGCAAGACTTCGGGTGAAGGAGAACCATTTTTCAGATGATGGGGGCAATGCATCGGCACCACGGTTCAGCACCGAAGAGCTACACGATCAGACCGGCCAATCATCAAAGAACATCCCCAGCGTCCCTGCTGTCTCTTCCAGTACACTTGACAGACATCGGCCACAGACGACCGGCGGCTGTTATGAGAAACCAAGCCCGGTGACGGACTACACGAACAAGAACCGTCTGACTGAGAAAAGGGTGTACAGCCGCTTTGAGCCCTTTTGCACGTTTGAAAAGCAGCCGTCGGCTTCGGATCACACTGCAGCCACCACGACCATCCACGCACCCGAGAAAAACAAGACCATCTTCAACAGTCAGGGAAGAACTGGCTCTGCGTTCACACGTCATAACTCTACAGGGTATCAAAGCTACACTCACACTGAGAATAAATTTGGCAGATTCATGCAACGAGTAGGAAATCTTATTAAACACAAGTAGGGCATAGGGCGGGAAAACTGACAATGCTAATGGGAAAATCCaaagcagaaaaacatattttaaagacataaaCTGATAAGAAACAGTAATGTTAATGGCCATACTGTTTGTTTGAGACTACAGTGCGTACACACATTCTTGTGCTACTATTCCTgggttaaattatgtattggattacatttgtaatacctcattctgtatttctgttctaCACTGTTTCTACGCCATTTCTTGTACATatagaacatgtttttgtttagttgtttttttttaccttaaatATTATCTTTAAATGTCATATCTGCATCTTGTGGTATTAAGGTGTTTATATTCAGGGTTTAGGTAAAAAATAAGAAGccaaatttatatattttggttgAATTTGAGGGCTGCTTTATGTAAGCATGGGGCGAGATACTACAGCTGACATGGAAggcactttttaattaaatactaaaaCCATCACAGTACAGACTCATATTACTGCCAGGGAAAACCTATACCAGGTAGAATCTGTTGCACAGCATTTCTACAcatgactttttatttaatatataggaCTTCTGATTGTATATACCTAGAACACTTTTATATATAGTCACACCAtaaaatatatggaaaataaatctggCAAAACATCAGGATTAACTGTAGGAATTATTAcaatggaattaaaaaacagtggaaACATTACGACacaattcaataaattaatatagatTGTGACGTACATATGGTAATCAAATTTCACCACAATGACccacaaaaaaatatgataattacattttaattactttaataatgttttaataactcTGATGTTGGCACTGTGCTCTGCTCTGAAAGTGTTCATATGAAAGCACTCAGGATATCGCAGAGGGTCCTGCATAGAACATAATAAAAAGTACTTTGTGGGAGATAGAAgttcatacattattaaattaaaaatacttttaaatagaGACTtagaataaaacagaatatagAAAGTTCCACATAGGAGATAACTCATTGTTCTCTGGCactaatatattttcaaatcactGTGACTTTAGAGTCTTTTataactttctgttttttaaagcaataaatcAGGCAAGACTGAAACTCAGATATTTCTCCTACTAGTGAGTTAGACTTTTTAATACTGATCATTTGTGATGGACTCACCATAACCAAAAAGTCTGTGTTCATTCTCTTGTATTTTTGCCTCTTTTGTGAATTAATTTCTGGAATGGCAAACGTTGATTATTCAATTGTCCAGATATAGCAATGCTTTGGCAAAGGCTTAAATGCAGTGATGTAAAAAGGCAGATTTCAAGCATGATTCTTGCCTCATGTTGGGACCTGCTTGACAGtacaacacacatacataactTCCATTAACTTCATCATAGCTCATTGGAAAAAATATCACACTTTATAGCACTTATCGAGGGGGAGCGTTTTATGCTGAGCACAgttcttattaatattaatgtaagCCTTACATTTGAGACTAAAAGAAGCATTGATTCTGCATCATCTACATCAGTGTTTGCCAACCATTGTACCACGGCACACCGGTGTGTCTTCAGGCATAAACACGCGTGCCATGGGATTTCTGAAGAGCCACACACTAAATAATCATTTGAATTTAGGATTTCTTTATATACAGAGCCACATTTCATACAGATATGACCATTTAGACTTAGAATCTAGAACCTACGTGATATTCAGATCAACTATAATACTGCATTGCAGCACAGAAAGGAGAGATCTTACAAGCTTTGGAAGTTTATAAAGGAGTGGGCGGGTGGAGAAGGTTGCTGTGCTGTTCTGCAGGTGTGACTTAGGCATGAAAACGTGTGAGGAACCATTGATCTGCCTCATCCCATAGAACGCAAggattataaatatgaattgtattacataaatattatttttaattgggaAAATCTCCAAGGGAAAAGCTGTAGTCAAATAAAAGAACCAAACGTGAACccccattaaaaataatgcagtcagaccaaaaatataataatattcattCCACTGCAGTGCTCAGCTCAGGACTGAAGCATGATGCCAGCATCTGTTATGATTCCGCTTTAAGCATCATGACAGCAATCAGAAAACAGTGTATTAGAAATTCAGAGGCGTTTGCTTagaactttttctttctctttaaaatTAGGGGTTCAATAAATCACATATATTTTACTCTGCTGGCCAAAGAATGTGTATTTCTTGGGATCATTGCAGACCACTAAAATGCTGTTTGAATCTATTGCTTTCTGGACTGGAATCCTTTGCCACAACTCTGGAAAACATAAGAGttaataaataagcaataagTCAATTTGACCCTGTTATTAaaattggaa

Function

GO: NA

KEGG:

id description
K23930 FAM83; protein FAM83

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001731 True 5583 mRNA 0.41 5 14365447 14380677

Neighbor

gene id symbol gene type direction distance location
AMCG00001743 hcrtr2,LOC107699124,LOC107597943 coding downstream 5868 14348093 ~ 14359579 (-)
AMCG00001744 NA coding downstream 22276 14340758 ~ 14343171 (-)
AMCG00001729 NA coding downstream 295572 14060233 ~ 14069875 (-)
AMCG00001726 NA coding downstream 305721 14057676 ~ 14059726 (-)
AMCG00001728 NA coding downstream 324267 14038870 ~ 14041180 (-)
AMCG00001732 NA coding upstream 17858 14398535 ~ 14421490 (-)
AMCG00001735 NA coding upstream 44598 14425275 ~ 14431342 (-)
AMCG00001734 lrrc1 coding upstream 54629 14435306 ~ 14461055 (-)
AMCG00001752 fbx9,fbxo9 coding upstream 145832 14526509 ~ 14533785 (-)
AMCG00001754 agpat5,LOC107665182,LOC102777099,LOC107717842 coding upstream 193136 14573813 ~ 14598148 (-)
G160040 NA non-coding downstream 49304 14311141 ~ 14316143 (-)
G160025 NA non-coding downstream 97706 14267387 ~ 14267741 (-)
G159995 NA non-coding downstream 161679 14175741 ~ 14203768 (-)
G159904 NA non-coding downstream 614358 13750880 ~ 13751089 (-)
G159818 NA non-coding downstream 1571886 12787082 ~ 12793561 (-)
G160080 NA non-coding upstream 40260 14420937 ~ 14517285 (-)
G160085 NA non-coding upstream 93565 14474242 ~ 14480359 (-)
G160094 NA non-coding upstream 111221 14491898 ~ 14493649 (-)
G160132 NA non-coding upstream 178475 14559152 ~ 14563505 (-)
G160311 NA non-coding upstream 1213930 15594607 ~ 15595355 (-)
G159976 NA other downstream 213892 14147628 ~ 14151555 (-)
AMCG00001710 NA other downstream 1260023 12995637 ~ 13105424 (-)
AMCG00001704 fam135a,LOC107601029,LOC107747270,LOC107665594 other downstream 1388421 12942361 ~ 12977026 (-)
AMCG00001702 NA other downstream 1428204 12931231 ~ 12937243 (-)
G159303 NA other downstream 3694206 10670437 ~ 10671241 (-)
AMCG00001733 NA other upstream 83053 14463730 ~ 14473159 (-)
AMCG00001756 NA other upstream 170012 14550689 ~ 14570927 (-)
AMCG00001771 banf1,LOC105900308,LOC107086546,LOC106536379,LOC106576720 other upstream 1118876 15499553 ~ 15501793 (-)
G160255 NA other upstream 1123634 15504311 ~ 15520639 (-)
AMCG00001784 NA other upstream 1310892 15691569 ~ 15702500 (-)

Expression


Co-expression Network