AMCG00001732


Basic Information

Item Value
gene id AMCG00001732
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 14398535 ~ 14421490 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001732
TGGAAACCTCCACTACGCTGGTGTTATCACTGGGGCTGCATGATAGACTTCAGTCTAAGAAGTTGAAAAGTGCTATGAATTCCAGCATGTAGATGGAAACTCAATTTCACTGGAGTACCACTGTTGCTTCAGGGACATGGAGATGGAAAAGCAAGAGAGTTTCATGCATGTTACGGAGGAGGACCGCCAGACGgTTCGATCAAAAACACCCACGACCAAGCTTCTGTCATTCACATTCATACCTGCAGTCAGGAGACTACCGATTAAAGCTCAGGTAATCCCGAGAGGAGATAACGGACAACCTTCGGGCAGGTCACATGAGTATTTAGGCTTATCCAGAGGAAAGGCAACTGAAGAGACGATGGTGGAAGATGGTGTTTTCAAGGCAGAGATTGTGTATGTGGGCGACTCTGATGAAGGGGAAGGAGATCATCGTGAAAAACATCACACTGCAGGGACTCAAGGCGATGACTCTAAGAAACAGGGGGCTCAAGTTCAGtTCAATTCTCCTGCTGCTCACATGACCCCAGCCCAACTTACCGCTCCTCCAATTACAGTCTGTAAAGAGAATGCAGGACTCGACTCAAATCATTtgaatacaaaacatgaatCCACTGCGTCGGACACACTTGCTAACGAACAGAAATCCATACTTCAGCCGTGTCTTCACacgtctctcactgctaaaatacactcCAGTCTCTTTTCTGGCCAGCGTTTTGGCAAATGTGAGATAAGGCCTCAGATTTCAGATCGCTTCCCTAGTCACCTGGTCATGGAAAGATTTTTTTCTCCAATGTCCTCGAAAGAATCGATTCTATCCACGGACTCGGACAGAGCGAAAAGCTGGTCTGCTTTACATTTATTGTCCTCCGAAGGATCCCAAGCCTCTCTCTCCCGTACGGTTTCTCCTTGCTCTTCGGTCAGATCGGGTGCATTTACGCCAACGATAGTCAAAGTCAAGCGCCAATCTTTAGCGTCTGGCTCAAGTCTGCTACAAACCCCACCTCACTGTTTGTCTCCTGCTCCCCACAGACTCACACCCGGCTACATGTCACCAAGCGCTACGTTAGGACGTTCATGGCACAGGCCTCCACCATCGCAGCTTTCACTCCTCACTGCCATACTAAGGAAGGGTTATCTCCCACACATATCAGAGCAAAGGCCATTCTCCCCTTCCTGGCCTCATAGTCCGGCAAGTCTGTCATCTTTGAATGTCTGCTCTGTTACCTCAAGCTTGACGTCCGTCTCTCTTGAGGTATCCCGATCACAGTCCCCAACAGAAATGCCGTCTGGCAGTTCACCCCCTCTAGTGCGTACGCCCACATCACCATCCTTGAATTGTCTCACACCTCCTCCATCCCCTACCTCTACAGAGTCAATACCGTTGTGTGTGCTGGAGCATCCACTGAGTCAATCCCCTGAACCTGCCAAAAATCTCGTTCCCCCACTTCAGAACTGCCCCTCTTTCTCATCCTACCCCAGTCCTACAGCTAGTCCAGCACCCCCTCTCTCACCAGCTCCTAATCCCATCACTCTGTGCTCCCCCTATTCTACACTTAACACCATATCTCCTATATTCAGTTCCTTCTCCAGCTGTCCCTCAGAAACGCACCCTGTGCCCTCACCCACACCAAGAGTTACTATTTCTCGGGCGCCAAGCTACAGTGAACCTTGCCCAGCGTATCCTTTGCAAAGCGCAAATGGAATTCATTTATCTGTAGACAGACATAGTCCCAGCTGCTTGgttcacacactctctccatccCCACCACCATTTTCTACTTCCCTTTCTCCCTGCTCTCCTCGGTCTCTCTCGCCCAGGTCAATCTCGCTCTCTCCCATCCCCACCCCCAACCGCTTAATGCTCTCACCCTCCCCGACACGTGACTTTGCTGAGTCTACCCCATcaccttctctctcctcttcctcaaTACCCTCTCCGACCCCGAGGTGTGGGACTTCAGAGCTCTCATCCTCTCCCATTGAAAGTGAGACTAGAATGAGAAAGcaatacaaaatcaaatcaagctACAAGGCCTTTGCAGCTATTCCTACAAATACACTTCTCCTGGAGCAACAGgcTATAGATGAAGAGGTAGAAAGACAGATCTTGCCAGAAGCAACAGGAGACGGCAGTGTGACCGAGACCCATGCAGAGATGTGTTCGCCGGCAGAACTCAGGCAACAATCTGCTGAACTGTACGCTGCCATCGATCAGGTTTTAGACGAGCCCCTGCCAATGCGTCGGTCACAATCCGCTCCCATGTCCTTGCAGAAATTAGTGGACACCGATGCACCAAAACGTGTCACAACCCTGCCCAGGTCTGCAGGACGAGAGACTAAATATGCTACTTTCCATCTGTTACCACCTGGGCCTACTGAGAGACAATTGACCAAACCTGGAGTTATACGGCCTGTGTCCGTTACTCCAAGATtaccagaagaagaagaagaagaagaagagtaCCGTGCCAACCCCTTCAGGCAATATCTCGAGGAGCTGTCAGATGGTGAACTTCAAAAGCGGCTGTCTCTGCCGTCCTCATTCCTGACTTCCATTGTCTCTCATCCGTCCTTCCAACATCACCTGTACCAGAACGTCTTGTTCCCAGGGAGAATCTCCCTGTTAAACCCGTTGTCTTTTCCTCATGAACAATATATTGGACCATATATTCACTTGCCTTCGTTTATTCCACCTAACCACCACACTAATCTCCCTCTGTGTCTGGGAACATTGTACAACAAGCTTACCAATACAGGTTCGGGATTCAGAAGGACAGACGGCAGCAAAAGCCTCGCGAACCAAAAGCTCGGCAAGGAAACGATCCCGGAAAAGGACAGCCCTACCAATGAACTCCTTCAAATTATAGAAAGGGAAGACGGAGACCAAGACCAGAAGTCCACTCTAGGTACAGAAGGATCGACTGTGTCCACATTTAACTcatctcaaattaaaatggaacTTAGGGAGACCCACATCTGAGTATTGCACGGGGACAGACAGTGGTAAGACCAGTTATTGGACCCCCGTGCTGGTGCTGAAACAGGACAATCTGACGCATGTAGAGATGAGCAACACGGAGGGAAATGATGCTAATGCAAGCCACAGTAAAGGTCTATTCAATTTTCCTTGACAAAGTAATGAGATCCCTTTTCTTTCTGAATTAAGCTTTTCTCTCATCAGTTAGAAGATTGTGGGAATGATGGAAATGCTAATTTAAATGGCAGATATATGAAGAACTGTAAAGCCCCTACTTATCACATGACTTgcttaatatattataaatgatgCAAACATCTCAGTAAAACTTAATGGACTGatataaatatgaaacaatacTAACAACAGTATCCATTTAGGATACTTCACAATAATACTGAATTCAGTGTGTCACAATGTTCTGCACTGTCATGTTTTGCACtgtagttttaaaaaaaaatatttgtcagaCTAACAGTTTTAATCCCTCATGATATACTGTAATTTTATTCATCTCaaattttgcagttttaaagCAATATCTAGTTCTCCTTTATCTGTAGAAGTGGGTTATAGATGTGTAGTGATATACTAAATATTCCGCCTATATCTAATGACAGTCCTTTCATACCAGATCGTTCTTTACTCATTTTTGTGCAATTTCGTAATATAGTCCATCACACTGGCTTCAACGCTAATGACCTGAGAATTCATACTAtttgtgtgatgtgtttttttattattattataattctatAAAATAGATGTGAGCTTAACCACATTACAGGAAAATCCGAATGTATAGACTGAGATTGTAGACAGGTTTTGGTTTGCAAAGCTTATGGAGTTTATAGTTTTAGATCAACAGTATTACGAAATCATtgtaataactattttgtaattttcattAATACAATGCAAAGAAAACTTGTTATAATAAAGACTAGCTTTGATAATTTGCATATTGCTCACCCATTGTATATGATacagaaaaatgtgtgtgttgtgtatgtgtatactgtatgtgtgtacgtgtatgtgtatgtgaattGTGATGCGGGATGAGGTGTAGGGAACAGCCACCAGAAATGCCA

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0055004 atrial cardiac myofibril assembly biological_process
GO:0055014 atrial cardiac muscle cell development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0070925 organelle assembly biological_process
GO:0061061 muscle structure development biological_process
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005272 sodium channel activity molecular_function
GO:0015081 sodium ion transmembrane transporter activity molecular_function

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001732 True 4077 mRNA 0.45 13 14398535 14421490

Neighbor

gene id symbol gene type direction distance location
AMCG00001731 NA coding downstream 17858 14365447 ~ 14380677 (-)
AMCG00001743 hcrtr2,LOC107699124,LOC107597943 coding downstream 38956 14348093 ~ 14359579 (-)
AMCG00001744 NA coding downstream 55364 14340758 ~ 14343171 (-)
AMCG00001729 NA coding downstream 328660 14060233 ~ 14069875 (-)
AMCG00001726 NA coding downstream 338809 14057676 ~ 14059726 (-)
AMCG00001735 NA coding upstream 3785 14425275 ~ 14431342 (-)
AMCG00001734 lrrc1 coding upstream 13816 14435306 ~ 14461055 (-)
AMCG00001752 fbx9,fbxo9 coding upstream 105019 14526509 ~ 14533785 (-)
AMCG00001754 agpat5,LOC107665182,LOC102777099,LOC107717842 coding upstream 152323 14573813 ~ 14598148 (-)
AMCG00001755 mcph1 coding upstream 202310 14623800 ~ 14637738 (-)
G160040 NA non-coding downstream 82392 14311141 ~ 14316143 (-)
G160025 NA non-coding downstream 130794 14267387 ~ 14267741 (-)
G159995 NA non-coding downstream 194767 14175741 ~ 14203768 (-)
G159904 NA non-coding downstream 647446 13750880 ~ 13751089 (-)
G159818 NA non-coding downstream 1604974 12787082 ~ 12793561 (-)
G160085 NA non-coding upstream 52752 14474242 ~ 14480359 (-)
G160094 NA non-coding upstream 70408 14491898 ~ 14493649 (-)
G160132 NA non-coding upstream 137662 14559152 ~ 14563505 (-)
G160311 NA non-coding upstream 1173117 15594607 ~ 15595355 (-)
G160319 NA non-coding upstream 1182353 15603843 ~ 15610716 (-)
G159976 NA other downstream 246980 14147628 ~ 14151555 (-)
AMCG00001710 NA other downstream 1293111 12995637 ~ 13105424 (-)
AMCG00001704 fam135a,LOC107601029,LOC107747270,LOC107665594 other downstream 1421509 12942361 ~ 12977026 (-)
AMCG00001702 NA other downstream 1461292 12931231 ~ 12937243 (-)
G159303 NA other downstream 3727294 10670437 ~ 10671241 (-)
AMCG00001733 NA other upstream 42240 14463730 ~ 14473159 (-)
AMCG00001756 NA other upstream 129199 14550689 ~ 14570927 (-)
AMCG00001771 banf1,LOC105900308,LOC107086546,LOC106536379,LOC106576720 other upstream 1078063 15499553 ~ 15501793 (-)
G160255 NA other upstream 1082821 15504311 ~ 15520639 (-)
AMCG00001784 NA other upstream 1270079 15691569 ~ 15702500 (-)

Expression


Co-expression Network