AMCG00001734 (lrrc1)


Basic Information

Item Value
gene id AMCG00001734
gene name lrrc1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 14435306 ~ 14461055 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001734
CAGCAGCCAGGAATCGTGTGACGTCGGGACGGGCTGGGAAGAAGGGAGTGAGGGTTCCGGGTCAGACACGGGAGTGAGAGGAGATCAGCCCGGGAAGCCGCTGACACACGCAGAGCCGGAGCGGGACCCGCAAGAGAGCGATCACCGCACGACCCCCCGCGGCGTCGGTGcggggcaggagaggagagaggggccGCTGGGCTTCACTGCAGGCTGCCCTGTCGGTGTGCACTTTATTCAGCCCGCAGGAGCAGGGCTCGCCGTGTGCTGCTGAAACTCAGCCGAACTGGAAACTAAACCGTGAGATCGGACTCAAACCGGTGGCTGGATTGCGgacatcttttctttttgtgtgcgGTAACCGGAGTGGGGATCATCCCGTGATGTTTCACTGCATCCCCCTGTGGCGGTGCAGCCGTCACGTCGAGGCGGTCGATAAGAGGCACTGCTCGCTGCTGCACGTCCCGGACGAGATCTACCGCTACAGCCGCAgcctggaggagctgctgctggacgCCAACCAGCTGCGGGACCTGCCCAAGCCATTTTTTCAGCTTATAAAGTTAAGGAAACTTGGACTCAGTGACAATGAAATCCAGAGACTCCCTCCAGAAATTGCCAACTTCATGCAACTGGTAGACCTTGACGTGTCCAGAAACGATATTATGGAAATTCCTGAAAGCATTTCGTATTGTAAAGCTCTTCAAGTAGCAGATTTTAGTGGTAATCCCTTAACAAGgcTGCCCGAAAGTTTCCCAGAATTGCGAAATTTGACTTGTCTTTCCATCAATGACATTTCATTGCAAGCCCTTCCTGATAACATTGGAAACCTTTCTAATCTGATGTCGCTGGAGCTAAGAGAAAATCTCCTGACATATTTACCAGAATCATTGTGTCAACTAAGCAGACTGGAAGAACTTGACCTTGGAAATAATGAATTGTATAGTTTGCCAGAAACAATTGGCTGCCTTCTCAGCTTGAAGGACCTCTGGCTAGATGGAAACCAGTTATCAGAATTGCCTGCAGAGATTGGGAGCATGAAGAACCTGCTCTGTCTCGATGTGTCGGAGAACAAACTGGAGAGACTGCCCGAGGAGATAGGGGGGCTCTTCTCACTGACGGACCTCCTCGCGTCCCAGAATCTCATCGATGTCTTGCCCGATGGGATAGGGAAACTAAAGCATCTCTCAATCCTGAAGGTGGATCAGAACCGCCTGACACAGTTGCCCGAAAGTATTGGCAACTGTGAAAAACTCAACGAACTTGTTCTCACAGAAAATCAGCTACTTAATTTGCCCAGAAGCATTGGAAAACTTAAGAAACTCTCAAATTTCAATTGTGACCGAAACCGACTAATATCTTTACCAAAAGAGATTGGAGGCTGTCATAGCCTTAATGTCTTCTGTGTAAGAGAAAACCGATTATCACGGATTCCTGCAGAGATTTCCCAAGCCAAAGAGTTGCACGTCTTTGATGTGTCTGGCAACAGATTGATGTATCTACCGATGTCATTGACGGCTCTGAAGCTGAAGGCGCTCTGGCTGTCGGAGAACCAGTCGCAGCCCCTGCTCACCTTCCAGACCGATGTAGACCCGGAGAGCGGGGAGAAAGTGCTGACCTGCGTGCTTCTTCCTCAACAGCCTTTAGAACCGGAAACCCAAGATAACCTTGCCCGCTGCGGTGCGGTGGAGAGCCTGGTCACTGAGGTGTCGGACGAAGCGTGGAACGACCGTGCGATGAACCGAATCAGTGCCATCCGcttcctggaggaggagaaggatgatgaagatgatgaacAGGGAACGTTACTGCGGCGagccaccccccaccccggGGAGCTGAAGACCATGAAGAAAGCGGCGGAGAATTTACGGAATGACATGAATGCCGCTAAAGGACTGGATTCCAACAAAAACGAGGTCAATAAAGCTATTGACAGAGTGACCACTTCCGTGTAAAACTTTACCTCAGAAACATTTACCTCCTGTGTCTCCCCTGACTGTTGTCTCCTTCTCCTCGGATCCTGCCCAGCCCTTTTTATCCAGTACCTAACTTCATCTCCTAATCTACAATGGTATCTGGCGCTGCTAGCTGGGGCAACGTGCCTTGTTTTCCAACCAGTTTTTGCAGCAATAATCTGCACggtttttctaattttaactAGTGCTTTTCAGAAATATCGGTAGGTGCACTACTGTACGTTTAGAGTATCAtagttgtaaaaaatatatataaatattttttttttattatttttaaaacatggtgAATATATCTTCTTACATATTTGGGATAAATTATGCCCAGGTATTTTTGGACCTACTGATGAGGAATAATTGTATAGTTTTATGTGgaaaatgataattttatatttttttggcaGCTCAGAtggtgtacatttttaaaattttgtatAGCAGGTTTCTTAATAGATGCCGGATTTTTTAAACTTCATCTTGGTACTTGTTTTATTTCGTTTTTATTTGGTTATAAGTTTCCTTTTGTCTTCATATGGAACTGCATCGTGCTCTACAGCGTATCATTGCTTGGCTTTGTACTGCCTGAAATTAgacatctgcatttttaaatacacatttacactttttaaaacacGCTAGATGTGGGAAAGATTCACATGGATCTGTTCAGGTTGCACAAAAATGAGCCACGCTTTTTAacacattgaaatatttttttattagccagtttgtgattaaaaatgcagttgTCTGAAGCATAGGTGCACTTCTGCAATGTCAACGAAAATCAGAGAATATTGTTTATATGGTACAGTActtcttaaataaaatgttaactttgtttttaattgtattctaagGCAAAATTGGTTTctaatgttgatttattttgtaaaattattttactgcacaaaaaaaaatctacaatcTCAAATAGGCAAGACTTGGAGCCTACAGATTTTTATGACCTTTAACCACtgatacaataaaatcaattgaAAACCAAAACGCTCTTCATTTTTGCAGTAAATCTACCAGttgcctttcatgttttttccagACTTGTATGAGGTAACTACATCTGATATTTAAATCTACTTAAATTTCGTAGCAAGATTGAGTAATACATGGCACTGACAGATATGTTGTACATACTCCAATTCATTTTTACTAACCATCATGGTGTGAAGGTTGTGTGGCACTCTTCTATACTTTACAAACTGTctgaaaatgaacatttttgtattctCACTGTAAGTACATAATCATCTCCCTAGGATTACAGAGGTTAAATTTATCCATTGGCATTTCAGTTGGTTCAAGAGAGATTCTGGCCTGTCTGCACTTTGTCCCTGAATGTGTTCTGTCTACTCATTTGATTAAATTGAGTAATactttttctctctgtatttgGTCATCTGTTGAATTGAATTTCATATCCTATTTTTAATCCGTCAGAGACGTACG

Function

symbol description
lrrc1 Orthologous to human LRRC1 (leucine rich repeat containing 1).

NR:

description
PREDICTED: leucine-rich repeat-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001734 True 3446 mRNA 0.44 14 14435306 14461055

Neighbor

gene id symbol gene type direction distance location
AMCG00001735 NA coding downstream 3964 14425275 ~ 14431342 (-)
AMCG00001732 NA coding downstream 13816 14398535 ~ 14421490 (-)
AMCG00001731 NA coding downstream 54629 14365447 ~ 14380677 (-)
AMCG00001743 hcrtr2,LOC107699124,LOC107597943 coding downstream 75727 14348093 ~ 14359579 (-)
AMCG00001744 NA coding downstream 92135 14340758 ~ 14343171 (-)
AMCG00001752 fbx9,fbxo9 coding upstream 65454 14526509 ~ 14533785 (-)
AMCG00001754 agpat5,LOC107665182,LOC102777099,LOC107717842 coding upstream 112758 14573813 ~ 14598148 (-)
AMCG00001755 mcph1 coding upstream 162745 14623800 ~ 14637738 (-)
AMCG00001765 NA coding upstream 769317 15230372 ~ 15258616 (-)
AMCG00001763 NA coding upstream 874966 15336021 ~ 15359019 (-)
G160040 NA non-coding downstream 119163 14311141 ~ 14316143 (-)
G160025 NA non-coding downstream 167565 14267387 ~ 14267741 (-)
G159995 NA non-coding downstream 231538 14175741 ~ 14203768 (-)
G159904 NA non-coding downstream 684217 13750880 ~ 13751089 (-)
G159818 NA non-coding downstream 1641745 12787082 ~ 12793561 (-)
G160085 NA non-coding upstream 13187 14474242 ~ 14480359 (-)
G160094 NA non-coding upstream 30843 14491898 ~ 14493649 (-)
G160132 NA non-coding upstream 98097 14559152 ~ 14563505 (-)
G160311 NA non-coding upstream 1133552 15594607 ~ 15595355 (-)
G160319 NA non-coding upstream 1142788 15603843 ~ 15610716 (-)
G159976 NA other downstream 283751 14147628 ~ 14151555 (-)
AMCG00001710 NA other downstream 1329882 12995637 ~ 13105424 (-)
AMCG00001704 fam135a,LOC107601029,LOC107747270,LOC107665594 other downstream 1458280 12942361 ~ 12977026 (-)
AMCG00001702 NA other downstream 1498063 12931231 ~ 12937243 (-)
G159303 NA other downstream 3764065 10670437 ~ 10671241 (-)
AMCG00001733 NA other upstream 2675 14463730 ~ 14473159 (-)
AMCG00001756 NA other upstream 89634 14550689 ~ 14570927 (-)
AMCG00001771 banf1,LOC105900308,LOC107086546,LOC106536379,LOC106576720 other upstream 1038498 15499553 ~ 15501793 (-)
G160255 NA other upstream 1043256 15504311 ~ 15520639 (-)
AMCG00001784 NA other upstream 1230514 15691569 ~ 15702500 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006362 lrrc1 coding NC_007124.7 CM002897.2 2254238 ~ 2283176 (-)
grasscarp (Ctenopharyngodon idella) CI01000005_05839780_05888414 LRRC1 coding CI01000005 null 5838912 ~ 5888414 (-)