AMCG00001743 (hcrtr2,LOC107699124,LOC107597943)


Basic Information

Item Value
gene id AMCG00001743
gene name hcrtr2,LOC107699124,LOC107597943
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 14348093 ~ 14359579 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001743
ATGAAGATCACAGAGCCTTCAACATCTGGAGTGATGTCTGCGATCACCTTGGACTCGGGCTGTGAGGATTGTTCACCTCTGCCACAGCAGCTGAACAGATCTGTTGAATCCCAGCCAGATCCGACCATTGATGGAGATGATGAATTGCTGAAGTACATCTGGAGGGAATATTTGCACCCGAAGCAGTACGAGTGGGTTCTTATTGCGGGCTACATTGTGGTGTTCTTCCTTTCTCTCATCGGAAACACGCTGGtttgttttgctgtgtggAAGAACCACCACATGCGGACAGTAACAAACTATTTCATAGTGAACCTCTCGTTTGCCGATGTCCTGGTCACCATCACCTGTCTTCCTGCAAGTCTAGTGGTGGACATCACAGAAACGTGGTTCTTTGGTCAAACTCTTTGCAAAGTACTGCCTTACTTACAGACAATAtcagtctctgtgtctgtaCTCACTTTGAGCTGCATTGCCCTGGACAGATGGTACGCCATTTGCCATCCTCTGATGTTCAAAAGCACTGCAAAACGGGCCAGGAAGAGCATTGTTATCATATGGATTGTCTCCTGTGTAATAATGATTCCTCAGGCCATTGTGATGGAGTGTAGCAGCATGGTCCCCGAACTGACAAACAAAACCAGTTTATTCACAGTCTGTGATGAGAACTGGGGAGCGGAAATCTACCCCAAAGTGTACcacttgtgttttttcattgtcaCTTACTTGGCACCATTATGTCTCATGGTGCTGGCCTACATTCAGATATTTCACAAGCTATGGTGTCGGCAGATTCCTGGAACATCTTCGGTCGTTCAAAGGAAGTGGAGATCTTTGCAATGCTCGTCGCAACCTTCAGCGCCTGGGGCGTCTGTCAGAATTAAAACGAACGCAGTAGCAGCAGAGATCAAACAAATCCGAGCCAGGCGAAAAACTGCAAGAATGTTAATGGTGgtcctgtttgtgtttgctttgtgcTATCTGCCGATCAGCATACTCAACATCCTCAAGAGAGTTATTGGAACAtttgacaatacaaataacagaGAGACTGTGTACGCCTGGTTTACATTCTCTCACTGGTTAATATACGCCAACAGTGCTGCAAATCCTATTATTTATAACTTCCTTAGTGGCAAGTTCAGAGAGGAATTCAAAGCAGCATTTTCTTGCTGCTGTTGTGGAATGAGTCACCGCAAGGAGGAACATCAGATCAGAGGAAGAACGAGTACTGATAGTCGTAAATCCCTGACCACGCAGATGAGCCATTTTGATAACGTGTCCAGGATTTCAGACCACGTCGTCCTGTCCAGTATGGGAACGCTGAGGGACGCCGatggagaaaaaactaaa

Function

symbol description
hcrtr2 Predicted to enable orexin receptor activity. Acts upstream of or within circadian behavior; melatonin metabolic process; and regulation of circadian sleep/wake cycle, sleep. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in brain and spinal cord. Orthologous to human HCRTR2 (hypocretin receptor 2).

NR:

description
PREDICTED: orexin receptor type 2

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0030186 melatonin metabolic process biological_process
GO:0045187 regulation of circadian sleep/wake cycle, sleep biological_process
GO:0007631 feeding behavior biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016499 orexin receptor activity molecular_function

KEGG:

id description
K04239 HCRTR2; hypocretin (orexin) receptor 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001743 True 1353 mRNA 0.46 7 14348093 14359579

Neighbor

gene id symbol gene type direction distance location
AMCG00001744 NA coding downstream 4922 14340758 ~ 14343171 (-)
AMCG00001729 NA coding downstream 278218 14060233 ~ 14069875 (-)
AMCG00001726 NA coding downstream 288367 14057676 ~ 14059726 (-)
AMCG00001728 NA coding downstream 306913 14038870 ~ 14041180 (-)
AMCG00001727 prim2,LOC107743543,LOC107725490,LOC107676604,LOC102784181,LOC108443732,LOC108263846 coding downstream 362766 13978613 ~ 13985327 (-)
AMCG00001731 NA coding upstream 5868 14365447 ~ 14380677 (-)
AMCG00001732 NA coding upstream 38956 14398535 ~ 14421490 (-)
AMCG00001735 NA coding upstream 65696 14425275 ~ 14431342 (-)
AMCG00001734 lrrc1 coding upstream 75727 14435306 ~ 14461055 (-)
AMCG00001752 fbx9,fbxo9 coding upstream 166930 14526509 ~ 14533785 (-)
G160040 NA non-coding downstream 31950 14311141 ~ 14316143 (-)
G160025 NA non-coding downstream 80352 14267387 ~ 14267741 (-)
G159995 NA non-coding downstream 144325 14175741 ~ 14203768 (-)
G159904 NA non-coding downstream 597004 13750880 ~ 13751089 (-)
G159818 NA non-coding downstream 1554532 12787082 ~ 12793561 (-)
G160080 NA non-coding upstream 61358 14420937 ~ 14517285 (-)
G160085 NA non-coding upstream 114663 14474242 ~ 14480359 (-)
G160094 NA non-coding upstream 132319 14491898 ~ 14493649 (-)
G160132 NA non-coding upstream 199573 14559152 ~ 14563505 (-)
G160311 NA non-coding upstream 1235028 15594607 ~ 15595355 (-)
G159976 NA other downstream 196538 14147628 ~ 14151555 (-)
AMCG00001710 NA other downstream 1242669 12995637 ~ 13105424 (-)
AMCG00001704 fam135a,LOC107601029,LOC107747270,LOC107665594 other downstream 1371067 12942361 ~ 12977026 (-)
AMCG00001702 NA other downstream 1410850 12931231 ~ 12937243 (-)
G159303 NA other downstream 3676852 10670437 ~ 10671241 (-)
AMCG00001733 NA other upstream 104151 14463730 ~ 14473159 (-)
AMCG00001756 NA other upstream 191110 14550689 ~ 14570927 (-)
AMCG00001771 banf1,LOC105900308,LOC107086546,LOC106536379,LOC106576720 other upstream 1139974 15499553 ~ 15501793 (-)
G160255 NA other upstream 1144732 15504311 ~ 15520639 (-)
AMCG00001784 NA other upstream 1331990 15691569 ~ 15702500 (-)

Expression


Co-expression Network