AMCG00001754 (agpat5,LOC107665182,LOC102777099,LOC107717842)


Basic Information

Item Value
gene id AMCG00001754
gene name agpat5,LOC107665182,LOC102777099,LOC107717842
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 14573813 ~ 14598148 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001754
ATGTTCGTCTCCCCGCTGAGTCAGCCTCCGTGCCACAGTTTGGCCGAACTGATCCTGCTGTGCGGAGGGAAGGTGTGCAAGACGGTCCGACAGGCGGGGATCTGCATCGGCCACTATCAGGCAAAGAAAGCCCCTGGAACTCAGAGTCTATCGGAGCAGTGGATTCTGGACACCCCGgtgtttcttgtgaaaatgcTGCTGTCCTTGGTTGTCCACACGTACTCTCTGCGGTACTGGTTCCCCGCCACCGTGATGCTGGGCACCGCTCCGGCGTACCTCCTCACCTGGAGCTTCTGGCGGCTCCTGTCCGCGGTGCTGCCCACCCGGCTCTACCACGGCATCGACGACCGCATCTACTCCATCTACCAGAGCATGGTCCTGTTCTTCTTCGAGAACTACACTGGGGTCGAGGTAGTTATTTATGGCAATATACCAAAGAGTAAAGAGAATGTGGTCTACCTTTCCAACCATCAATGTACAGTTGACTGGATCATCGCTGATATGCTTGCAATCAGGCAGAGTGCCCTGGGCCACGTTCGATATGTCTTAAAAGATGGACTGAAGTGGCTTCCTTTGTATGGATGGTATTTTTCTCAGCATGGAGGTGTATATGTCAAGCGAAGTGCCAAGTTTGATGAGAGAGCAATGAGAAATAAGCTCCTATCTCAAACTAAAATAGGAACCCCTatgtACCTTGTAATTTTCCCTGAAGGAACACGATACAACCCTGAGCTAAAAAAAGTGATAAGTGATAGCCAAGCTTTTGCACATAAAGAAGGGCTTGCGGTTCTGAACCATATTCTGACCCCAAGGATGAAAGCAGCCCATGTAGCTGTAGACACAATGAAGGGCCACTTGGATGCGGTGTATGATGTCACTGTGGCTTATGAAGGAACTGTGGACGTCAAAGGACAAAGAAGAGCCGCACCCTCAATGCCAGAATTTCTGTGTAAGGAATGTCCCAGagttcatgtttattttgaacGCTTGGATGTGAAAGAAATCCCTCAAGAGACGGCGTTCTTCCGAAGGTGGTTGCATGAGCGATTTGAGATTAAGGACAAATTGTTGGCCAATTTCTATGATTCGGATGACCCTGAAAAAAGGCACAAGTTTCCCGGAGAAGGTCAAAGATCGCCTCTGAGTATTAAGAAGACTTTGCCGTCTTTGCTTTTTTTGGGTGGCCTTACATTGCCAATGTTGTTGACAGAGTCTGGAAGAAAACTGTACATCAACACCTGGGTTTATGGGACTTTGGCGGGATGGCTGTGGGTTAATATTAGGCCATAATGAAAACCAGTCTGTATGCCATTTATAATAGGTTTTGAAATACCCAGCCCCTTTTCACTGTTCTGAAAAAGTGATTTTGCAAACTATATGGAAACTATGGTCTATCCCTTTTATAAATGCGGGGCTTTAAAGACCTTTTACAAATTGGTGGCTTATGTACCATTAACCTTAATAGATGTAGGGGAATTGCTTATTAGCTTCTTTCTTTCAGTTGCTACTTTCTTGATCTTTGATTGTGTAAGTCATATAAAATCCCAGCCAGTTCACAGTTACGTATGGTGTCCGATTACTACAGCAGAGCCAAATCTTCAGTTCGTATTATGAGTTCAAGAGAAACTGCTGTtcacaaaaatggaaattgcaattaaaaaagatgCAGAAGCAGTATTTGAAATCTTCAGTGTTTTGAACGATTTAAGATTTcaattttaactttgttttaacTTTGATATCCCTTTACTCATGAATACGATTCAACTGGCCTGCACTGATGATTACTTAcactctctttaaaataaattagatcggtgtcatattttaaataggtAAGCAGTTTAggcaagttaaaaataaacaaatttgttATACTTGCATGTGAAATCAATTATCAAAGAAAAGCTTTAAATGCTTCCAGGCAAAGCTGATTGCAGACACATTTGTCATCATTGGGTTTCATTTATTATCCAAATCCAATCAATTAGTGTTGATCTCATTCATTTGATTTTGGTGTGTGAGGGTAATGACCTATGGCTTTAGTTTAAACGCAGTTGGTGGCAGGTCTGTCTAGTTCTTGAAATTTcaactttctttattttaatatacaaaaaaatatataaatgtatgtgtatgcttTACAAGCGGTATATTTTTACCAGAAAGTCATGTGTGTTGCCATACCTGATATTGAAAATAATCCAtggaatttatttaatatacatcagtaccttttttttttttttttttttgctaaaaaATAATCTTGCAAATGCTAGAGATCAGTCCCAGTTatcttatattcattttaattcaaaaacaattaagaaactctacaaaatgtttcctttgtgTGTAGAGTTTCACAGATTCCTACAttattgattttgcttttcCTCAACATTCAGTCGTTTAAGGCGCCTGTAGCACCTTTTCACAAGTTGAATTAAAAACGAGAAATGGGGTATATAGATGTAATTATAATGCCAAGTTAAGTATACGGATGAATCTGTGCAATTGTTCCTGTGTGAGAATGCATCAATATGCCATTTCCAGAGTTATGTTTCATGGGGTTTTTCATAGTCataacatgaaaagaaaaatgctttttcaCTAATGTcactttattactttttttgtaatgtgcATGAATCAAGGATttaaagggttttgtttttaactctcTTAACTAGCGCTCATTCATGTAAGTTACGACTTATACTGCTGATAGTTCAAGAGGTTCATTTGCATATCCTTTTATaaggttaaaacaaacaaatgttcaaTGTAGAGCAGTACCACAAGAGTTGTGTATGGAGATCTTCagcaaaatcaattttaaatccaGTGTTAAGTCATGGTCACAATGCAAACGTAAAGATAtgatgaaaaagaaagattgtACATTATCAGGAGATCTGATAGAAGCTATCTTCAAGTGCCATTTGTTCCAGGAAGTATGTGCCTTCTGCCTGAATGGGGTTTATCCTCATCAACATACCGAGGACAATCATAGTAGATCCTACTTTATACTAACCGCCAGAACTCTTAGACTTACTATGACGAATGTGCTGAACTCTAGTGGACTACAGTTTAATTGTTTATCACCGCACAATACATAATTAAGgtatacagtgttttaaaaatgtttacagtacATGTTATGAGTAGATTTGATTTACTGCTACAGATCACCCTTGTGAGACTCGGGAGCCAAGTATGTTTTCAGTGTAATGTAGGCTACAGGCCAAGAGCTTGGGAGAGACATTCTATACTAAGGGACTGGGGGTGAAATCAATGgggttttatttctattttgtaatGCACAAACTACTTATTTATATGAAGACCTGAAATAATGTTCTCATCTTTAAACATAACACACTGATAAAGATATTCTTCTAAGGCAGCCCAGTGTGACACAATTTGTAAGGGTCATATTTGAGCTGCTGCTTATTTTGGAGGAAATATTAAATTGTAAGAATAATTCAGAtagattgaaagaaaaaataaacaaatcctaTACATAAGGATGTATCTCTTCTTCCCTAGTCCCTCTGCAGGTGTTTTTGTACTCCCAAACCTTTTGACTTGTAGTGTACCTCAAAGCCATGGGACCGCAGTCTTTAATCCACAGTGATATTATAAAGGGGTTAAACAGGGGtagattgtaaattaaattagcttttttttttgcttttgcttttgatttaagCCCTCTGTTATATACCTCAGCCAGCAGTTATATGCAGACTAAAATAATGCACATACCACCAGTAGAGACTTCAAATTCCATAGTGTTTTTgctaatttgtctttttttatgtttttttgggggtggttggttgttttttgtcagGTAGAGGGGATTGcatttgaatgcttttttttttttgccactttttttatttttattattattattattatttttctccttggAAATCACAATTTATGAAGCCACATTAGCGTGCATGAATTTTGCTTTTCAGTAAAgtgtttgtgaaataaatgatgaatactgaaatgcattaacTTTATTGAATGCCACATTAACAGCAAATGCCAACACTTAACGGTTTTCGCTTCTTTGAAAACTTTTGATGTCTAATATCTTGTCTTTTCATAACCTTCAACTAATATGAAAgttttatacattaaacaaaacaaatattaaagcatTTGCCTAGTTGCATGCATctccctttcaaaatgtaacatttgcaaGACCCTGAATTCTACCTCTGCATATGTTTTCGTTCAGGCTTCGTTCCAAAACGTTTACAAACAGtggaatggaaattaaaaacttCTGTTATACTTCAATATTTGTGTGCAATATTTTTCTCTACTATAGAGATACTTTTGCTGTTATACGTGTTAAATGAAACCAGTATAGTTTTTTGCAATTTCATTTGAACAAAGTATGCCTTCTTACATATGCGTATGTACACAGAACAACGCttaacttacaaaatatttgtattcccGTCTCATTCTGaagaatccttaattgaactttGTGCTAATGGCCATTGCATCAGTAATTTGCTTTATTCAACAGGAGACTGATTTTAATTCTACTTTGTCTACTAGTCTTTTGGTGTTTATCATTTATTCGTGTAGTCTGTTGCCTCCTCTCATTCTGAAAGTGTCAGTTTCCTCTTTACATTTTCAGGTGtctg

Function

symbol description
agpat5 Predicted to enable acyltransferase activity. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endomembrane system and mitochondrion. Orthologous to human AGPAT5 (1-acylglycerol-3-phosphate O-acyltransferase 5).

NR:

description
PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase epsilon-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016746 transferase activity, transferring acyl groups molecular_function

KEGG:

id description
K19007 AGPAT5; lysophosphatidiate acyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001754 True 4688 mRNA 0.37 9 14573813 14598148

Neighbor

gene id symbol gene type direction distance location
AMCG00001752 fbx9,fbxo9 coding downstream 40028 14526509 ~ 14533785 (-)
AMCG00001734 lrrc1 coding downstream 112758 14435306 ~ 14461055 (-)
AMCG00001735 NA coding downstream 142471 14425275 ~ 14431342 (-)
AMCG00001732 NA coding downstream 152323 14398535 ~ 14421490 (-)
AMCG00001731 NA coding downstream 193136 14365447 ~ 14380677 (-)
AMCG00001755 mcph1 coding upstream 25652 14623800 ~ 14637738 (-)
AMCG00001765 NA coding upstream 632224 15230372 ~ 15258616 (-)
AMCG00001763 NA coding upstream 737873 15336021 ~ 15359019 (-)
AMCG00001764 NA coding upstream 840676 15438824 ~ 15449113 (-)
AMCG00001773 NA coding upstream 852581 15450729 ~ 15473689 (-)
G160132 NA non-coding downstream 10308 14559152 ~ 14563505 (-)
G160080 NA non-coding downstream 56528 14420937 ~ 14517285 (-)
G160094 NA non-coding downstream 80164 14491898 ~ 14493649 (-)
G160085 NA non-coding downstream 93454 14474242 ~ 14480359 (-)
G160040 NA non-coding downstream 257670 14311141 ~ 14316143 (-)
G160311 NA non-coding upstream 996459 15594607 ~ 15595355 (-)
G160319 NA non-coding upstream 1005695 15603843 ~ 15610716 (-)
G160387 fbxo28,LOC106576958 non-coding upstream 1193848 15791996 ~ 15796358 (-)
G160538 NA non-coding upstream 1636267 16234415 ~ 16235803 (-)
G160548 ryr2,LOC107395022,LOC102799451 non-coding upstream 1717179 16315327 ~ 16315563 (-)
AMCG00001756 NA other downstream 2886 14550689 ~ 14570927 (-)
AMCG00001733 NA other downstream 100654 14463730 ~ 14473159 (-)
G159976 NA other downstream 422258 14147628 ~ 14151555 (-)
AMCG00001710 NA other downstream 1468389 12995637 ~ 13105424 (-)
AMCG00001704 fam135a,LOC107601029,LOC107747270,LOC107665594 other downstream 1596787 12942361 ~ 12977026 (-)
AMCG00001771 banf1,LOC105900308,LOC107086546,LOC106536379,LOC106576720 other upstream 901405 15499553 ~ 15501793 (-)
G160255 NA other upstream 906163 15504311 ~ 15520639 (-)
AMCG00001784 NA other upstream 1093421 15691569 ~ 15702500 (-)
AMCG00001791 fam98a other upstream 1230610 15828758 ~ 15833806 (-)
AMCG00001843 NA other upstream 2493205 17091353 ~ 17092549 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006415 agpat5 coding NC_007124.7 CM002897.2 6259392 ~ 6279684 (-)
grasscarp (Ctenopharyngodon idella) CI01000005_00134161_00235512 AGPAT5 coding CI01000005 null 134161 ~ 235512 (-)