AMCG00001762


Basic Information

Item Value
gene id AMCG00001762
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 15432337 ~ 15439031 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001762
ATGGGGGTTGCTGACGGGCTACTGCTCCTCACCGCTCTGGTTTGCATCGCTTCTTCTCAGGagTTTTTATACACCCATGATGGGGCCAAGCCTTTGAAACCTGGATCCACCACGGACGTCAGCAAGAACGACCCGGGTGTTCAAAAGGCAGTGAAGACTGCAACCTACTACTTCAACAACAGATCCAACGACATATTTGTGTTCAGGGCATCCTCCATAGATGATGCAAAGAAACAGGTGGTAAAAGGTGTCAAATACATCCTGGAAGTGGAGATCTCCCGCACAGTTTGTCGCAAGAGAGGACATCCCGATCCGGACAACTGTGACTTCCAACCCAATGGGATTCTGAAGCAGGCAAGTCTCGTCCGCAGTGACAAGCATCTCCCACAAACCACAGACAAACCCGTGACCCGCTGA
>TU201717
TCTCAGTACTACTCTCCAACTCCGAGCAGCATGGGGGTTGCTGACGGGCTACTGCTCCTCACCGCTCTGGTTTGCATCGCTTCTTCTCAGGagTTTTTATACACCCATGATGGGGCCAAGCCTTTGAAACCTGGATCCACCACGGACGTCAGCAAGAACGACCCGGGTGTTCAAAAGGCAGTGAAGACTGCAACCTACTACTTCAACAACAGATCCAACGACATATTTGTGTTCAGGGCATCCTCCATAGATGATGCAAAGAAACAGGTGGTAAAAGGTGTCAAATACATCCTGGAAGTGGAGATCTCCCGCACAGTTTGTCGCAAGAGAGGACATCCCGATCCGGACAACTGTGACTTCCAACCCAATGGGATTCTGAAGCAGACGTTTCGCTGCCATTTTGAAGTCTGGTCCATACCATGGTTGCACCAGATGGAAACCACCTTCTTCTCCTGCGTGCCGCAACAAAGACTGTTTACCCTGGAAAGATAAGAGCATTGCTTTCCATACCTGATATACTGGAGCACGGTGATTAATTCATCCCCTCTCTTCACACTCGCAGAAACCCAATGGACTTTCTGAGTCTCTATGACATGTAACAGTCTTAAACATTTGCCCACATATACCATTATAACTGAAAAAACAGAGAAGCAACAGCAAGTGCCTTtactttagttttgttttcgtttttatttcaaaaatgtaattgttctgaTCGTGTGGCTTTTATCCAGCTAAACCAGACCcttcaattttctttattttcaactgtttttttgcttttcccaATGCTTGTTAGCTTGTAAACGTCTGACTTTAACAAGTGGTATCATTGTGTAAATCAGCTACGATTGTAACAGCCATAGTGCTTCCAGCACAAAGAGCTAAAGGACCCATTATTCTTAAtatacactgagacactgagttATATAGCATCGTTTTTGTGCTGAGAACacggaaagaagaaaaaagaaaaaacaatgtttgagGACGCTGTTTTTACATATATCTTTATTACTCACTACTTCAGTGCAACCTCAATTCAATGCAAACAGTGATTCTTGTTAGGggggatacaaaataaatgctgaagcCTCACAATGCCATCTTTATCAAGCGTTAAATAATTCAGTCGCACATGGAATGATTATAACAGTCTGACTTAGTGGTCTAGATGCTGTCGCTTTGAGGTGAGGATCTTAAAACTGCTCTGCTCATTAACGCATCACTTCAAAAGGTTTCTCTCCTCGACTCGGGACGGCTGCGGCCTACTGGATTACCAACAATGTTATTTGAATTGCTCCCTGCTGTGCATTTACACATCTGTCCAAGAACCACAAAAGGCAACCCCTTAAGATATTACAGAGCTGGCAAGATGATTGGatcaggaagaaagaaaacatatagCATATAAACTGTGGACTGATGAGGGGATATCAACCAAAGCAATACAGAAGACATTACAGACTTCTCCTTTTGCACAGGGTTTCGGAAATAGGAGTCTCGTCACGTTGCACAAGAGCAACAGTAAGAGAAGTAACGGTTGACCCAATAAGTTGCTAAAGGAGACGAGTTGGTCTATCAGCCATGGCTGACTTGTGGGGTCTTCCGATCTCTTGCCAGCTCCAAGACAGAGTTTTTGAGTTCAGGCTCTTGCAAAGTGCTGtcagtttttccttttcaaaccgttttcattttctgtgtgcttcataaaacacagacacagaaagcagGTGAAGTATACcaatgaaatacacaaaaagaaaataaggacAGTCTACAAATGTAGAATTTCATCACGCTTTGaccaacagaacaaaacaacaaacatagtggttaaaaaaaaatcttcctaTTCCTGATGACCTTACACCGAGTTTAAATATAtctgaacaaaaatacacagctgccacaaaatacatttataagcaAGCAGATTCGCCAGAAATACCAGCCAAACATTCATTACCCATCTAACTTTTAACACATTTCCAGTTTCCAGAATCTCTCCGAAGAGGTTGTCATTACTGTTGAAACTTACAAAAATCCTGCCCCATCTCCTCTGTGCTCAGTACTTAACTTACACAGAGTAAAACCATCCACATCTCTTTGTGCAATACTATTAACATGAGACACAGCAGTGACCTGGGGGCGAAACAGGTTACAAAGGTCCCCACGAGTCTCTGTTGTGGTTCGTGCTCAGATTATTTCGTCAACTTTTTCAGCAAGACACTGgtcaagaaaaaaagaaaaacgcaatctgctttggatttttattttttatttttaaaccctgcaAATGATCAAATGGCACTCAAAAAACCCTGTCAGCCCACACGCCGCTCCACTTGGCTTCGAGTAACACCAATGCACTTCCGTACCTCCGTGTCTTCAGGTTTGGGCCCAGAGAAGGTATTTTTGGCAGAACGGTTCCTTATCACGCCAACAATAACAACCCACGCATTTTAAGAATGATGGGAATAGCATACGGAAATTATACAAAGTGGCAGGAGAACAATCACAGTTAGGAAATAATTGACAATTCAAGGACACTTCGATCAATCAAGTTACCATGCAATATAAGAAACGGGGTCTGGCGTGCCTCCGTGCCTTCctcacattttaataatcacGTTTTCTGCAGCTACAGTAGTACAACAAACGGGAGATCGGATTTCACCTGATTTTCAGCCTTCAGGTAAAAAGGTAATGATTACAGCACAACTCTGAGCCCTAAGGACACAGATCTAAACACAAACCACACTGGATTAACAAAAGTATGCACATCGCTTCTGCGGCATTCACTCTTGAAATGATCCCAACAGAtgtctttgtttgttatttttacaagcagAAATGATTACTTCTGATAATGTAATCCTTATTCAAAGGGAAATGTCTGGACGTATTGCCAATACAGCCGACACGGTCAACACACAGTAACGCTATGTAATGCTGTGCCTCCTTTTAAATCCTacttagtaaaataaaaaatgggcaAAAAAGAACAGTATGCGCAGGGTACATACGAGCATCAGCGGCCGACAGCTTATACGAGCTTAAGATGACAAATCCAAATCCATAGAAATTGGGAAGCAGTTGAGTGGGGGGAAATAATgaacaatgtatatttatttatttatttatttatttgggtttttaaaatggaaacaaaagccTGGCTCACATTATTTCATAAGGATTTTCAAACATCATTCCTACCTTTTTAATACTTCATCCGGCCTTTAAATTATTCTACCGCGGATGCAACACTTGAAAGGCAAATCAGTGAATAGGATGCTTTCGTGTTgaagattttattatttgggTTTTAAGTAAACACCTACAGTCTGACACGTTCATCGAAATGTAGAGTTGAATTAGTTATCCCAGCCTTTTCTCTGCTCAGCCCTGGCGTTCTTTCTAAATGACACACTAAATGATGACACACTTTGCAATGTTATTAAGGAAGTCTTTGCATTTCTAATATGGAGAATAAACTGCTCCAGTAGTGAACCACAGATTCATATCAAATGGGGATGGGCGGGATGCAACAGCAGCTTTGCTTGGACTCACACGACTCCTCATTTCTCCGGTCAGCAGTGGCTCATAAGgggcataaaaaaaaaaaacacattgccgttaccaataaaacaaagcgatttcaataaaaaaaaaaaaaagtcttataCCCCAGGAAACGGCATAACGGATCCGATTACGTGCGACACAGGAGCGTGGTGGCCGTGGCCTCGGCCCCCCCGGCGCTCACACCTGGCTGAGGTCCAGCCGGCACAGGAAGGGCGACCGGAAGGAGCCCAGGTACAGGTGCCCGTCGTGCTCGTGCGCCTCGCTCACATATGTGGCCACCGTGCCGTGCGGGTCGTGGAAGCTCCTCTCGCACACCGCGTTCTCGCTCAGCTCCACCACCAGGCTGTACTTGGGCACAAACTTCATCAGGACCTCCTGACTGAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001762 False 417 mRNA 0.51 3 15432367 15434225
TU201717 True 3976 TUCP 0.42 4 15432337 15439031

Neighbor

gene id symbol gene type direction distance location
AMCG00001761 NA coding upstream 39661 15388046 ~ 15392676 (+)
AMCG00001759 rps6ka2,LOC107750746,LOC107717821,LOC107702677,LOC105021344 coding upstream 106599 15285864 ~ 15325738 (+)
AMCG00001758 NA coding upstream 166153 15264098 ~ 15266184 (+)
AMCG00001766 LOC106589815 coding upstream 314152 15016232 ~ 15118185 (+)
AMCG00001767 csmd1,LOC107565078,LOC107564890 coding upstream 483199 14944806 ~ 14949138 (+)
AMCG00001770 NA coding downstream 54216 15493247 ~ 15501705 (+)
AMCG00001769 NA coding downstream 63039 15502070 ~ 15525306 (+)
AMCG00001768 gins1 coding downstream 110560 15549591 ~ 15552415 (+)
AMCG00001776 NA coding downstream 139144 15578175 ~ 15610687 (+)
AMCG00001775 NA coding downstream 173981 15613012 ~ 15619118 (+)
G160200 NA non-coding upstream 14783 15402285 ~ 15417554 (+)
G160144 NA non-coding upstream 730881 14701134 ~ 14701456 (+)
G160129 NA non-coding upstream 799847 14629303 ~ 14632490 (+)
G160116 NA non-coding upstream 868968 14558766 ~ 14563369 (+)
G160107 NA non-coding upstream 905829 14525737 ~ 14526508 (+)
G160375 NA non-coding downstream 389745 15828776 ~ 15829766 (+)
G160463 NA non-coding downstream 675313 16114344 ~ 16114699 (+)
G160464 NA non-coding downstream 678174 16117205 ~ 16119266 (+)
G160542 tubb4b,LOC106575097,LOC105893757 non-coding downstream 837775 16276806 ~ 16278054 (+)
G160648 NA non-coding downstream 1460864 16899895 ~ 16902440 (+)
AMCG00001760 mpc1,LOC107725004,LOC106589821,LOC107693783 other upstream 97757 15331620 ~ 15334580 (+)
G160026 NA other upstream 1162147 14269615 ~ 14270190 (+)
AMCG00001691 NA other upstream 3098637 12329979 ~ 12333700 (+)
AMCG00001645 NA other upstream 4674479 10747489 ~ 10757858 (+)
AMCG00001643 spred2 other upstream 4754483 10655187 ~ 10677854 (+)
AMCG00001814 ryr2,LOC106456445,LOC108410403,LOC106906861,LOC101062804,LOC103129799 other downstream 798231 16237262 ~ 16377860 (+)
AMCG00001841 NA other downstream 1740563 17179594 ~ 17182601 (+)
AMCG00001846 NA other downstream 1978320 17417351 ~ 17462934 (+)
AMCG00001881 NA other downstream 2748871 18187902 ~ 18209391 (+)
AMCG00001883 NA other downstream 2770978 18210009 ~ 18217138 (+)

Expression


Co-expression Network