AMCG00001769


Basic Information

Item Value
gene id AMCG00001769
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 15502070 ~ 15525306 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001769
ggagaggccgGCCTGACGTCAGCGGTGTGTTGCCGTGTTGCCGCTCCACCAATGCGGCTCCCTGTCCTCACAGCCACAGTGCCGGGCTGAGCCGAGCATCCAGCGCCTCTCTCCTCAGTCACACAACAAACCAACCTCAGTTTAAGCAAAAAGTCTCTATTGTGCAGCCATGGCCACGCCACTGACAGACACCGAGAAAAGAAAGCAGATCAGCGTGAGGGGCATCGCCGGGTTGGGAGACGTCGCCGAGATCAAGAAGAGCTTCAACCGGCACCTCCACTTCACCCTGGTGAAGGACCGCAATGTGGCGACCCCCCGGGATTACTACTTCGCCCTGGCGCACACCGTCAGGGACCACCTGGTGGGGCGGTGGATCCGCACTCAGCAGTATTACTATGAGAAAGATCCCAAGAGAATCCACTACCTGTCTCTGGAGTTCTACATGGGCCGCACCCTGCAGAATACCATGATAAACCTCGGCCTGCAGAACGCCTGCGATGAAGCCATCTATCAGctTGCTTCTTGGACTCCATGGCGTCTCTGGGCCTGGCAGCCTACGGATATGGAATCCGATACGAGTTTGGCCCGCCCTGAGTACATGCTGCCGGTGCATTTCTATGGAAGAGTGGAGAACACCGCGGAGGGGGCGAAATGGGTGGACACTCAGATCATCCTCGCCATGCCCTATGACACCCCCGTGCCTGGGTACAAGAACAACACTGTCAACACCATGAGGCTCTGGTCTGCCAAGGCGCCCAATGATTTCAACCTCCAGGAGTTCAATGTGGGCGATTACATCCAGGCCGTGCTGGACAGGAATCTGGCGGAGAACATTTCTCGAGTCCTGTACCCCAATGACAACTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTCGTGGTGGCCGCCACGCTCCAGGACATTGTCCGCCGCTTCAAGTCATCCAGGTTCGGCTGCCGAGACCCTGTGGCTATCCAACTGAACGACACCCACCCGGCCCTGGCCATCCCGGAGCTCATGAGAATTCTGTTGGATATTGAGAAGCTGGACTGGGAAAAGGCCTGGGAAGTGACAGTACAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAGGCCCTGGAGCGCTGGCCCGTCTACATGTTCGAGAAGCTCCTGCCCAGACACCTGGAGATCATCTACGAGATCAACCGCCGACACCTGGACAAAATCTCTGCCGTATACCCGGGAGATTGGGATCGCCTGAGGAGGATGTCCCTGATCGAGGAGGGAGACCCCAAGAGGATCAACATGGCGCACCTGTGTGTGGTGGGCTCTCACGCTGTCAACGGCGTGGCCAGGATTCACTCCGAGATCGTCAAGACCACCGTTTTTAAGGATTTCTGCGACGTGGAGCCTGACAAGTTCCAGAACAAGACCAACGGGATAACCCCCCGCCGCTGGCTGCTGCTGTGTAACCCGGGCCTGGCAGACATCATCGCTGAGgAGAACAAGTTAAAATTCGCGGCTTACTTAGAGAAGGAGTACAAAGTGAAAATCAACCCCGACTCGATCTTCGACATCCAAGTCAAGAGAATCCACGAGTACAAGAGGCAGCTTCTGAACCTTCTGCACATCATCACCTTCTATAACCGTATTAGGAAGGATCCCAACAAGAATTTCACTCCAAGAACTATAATGATTGGAGGAAAGGCAGCTCCTGGCTACCACATGGCCAAGATGATTATCAAGCTGATTACCTCAGTGGGAGAGGTGGTCAACAACGACCCCGTGGTGGGAGATCGCCTCAAGGTCATCTACCTGGAGAACTACAGAGTGTCTCTGGCTGAGAAAGTGGTCCCCGCGGCCGACCTCTCGGAGCAGATCTCCACCGCCGGCACAGAGGCCTCCGGCACCGGGAACATGAAGTTCATGCTGAACGGTGCCCTGACCATCGGGACCATGGACGGGGCCAATGTGGAGATGGCGGAAGAGGCGGGCGAGGAGAACCTGTTCATCTTCGGCATGAGGGTGGAGGACGTGGAGGCCATGGACAGGAGAGGCTACAACGCCAAGGAGTACTACGAGCGCATCCCCGAGCTGCAGCAGGTCATGGACCAGATCAGCAGCGGCTTCTTCACCCCCCGAGAGCCGGACATGTTCAAAGACGTGGTCGACATGCTCCTGTACCACGACAGATTCAAAGTGTTCGCCGACTATGAAGCTTACATCAGCTGTCAGGAGAAGGTCAGCGATCTCTACAAGAATCCGAAGGAGTGGACCAAGAAGGTGATCAGGAACATCGCGGCCTCGGGCAAGTTCTCGAGCGACCGCACCATCTCCGAGTACGCCCGCGAGATCTGGGGCGTGGAGCCCTCCGACGTCAAGATCCCCCCGCCCAACGTCCCACGCGAGTGAAGGCGGCCGGGCccccacaacccccccaccGGACCGTGCCTGTCAGACTTGGCTCACTAACGCACAGCACCTTCAGTCAGACAGGGAATAGGATGACAGGTACCCGTCTCAAGAGGGTCAGCCGATACTCGGACGTGCACTGAATGTTATCGCTTTTAGCTCCAGGATTCCAAAGTCCAGTCCTCGAGGGCCGTTtatttccctccctcccttagTTTTCGTGATTTATTTGATCTGGAGGTAACCACACTGCACTTACAGGGAATGGAATTCAATCTACTGCTTGACAATCTATCCTTTTAGAGTCACAATTCCTTAACTTTTCCAACACGTACAAAGAGCAGAATATAAGGACAAGTAAGCGTTATTGACTTGCATTACCTTTGACGAGTTGGAGACGACGCTGTACTGAGTTTCTACCCCATTCCATGTGTGTTTGGAGGAGCAGGGTTTAATAGGTTTAACCCTCTTCCTGTATGAAAACTACTGAAAGATCTGGAGGTTCAATATCATTGCCTCTATAAAGGACAGCGGCCGATGGCATCTGTGTCTTAGATTAACATGAAGTTCTTCTCAAGAGCTATCCGTAGAAACCAGGTTTATTACAGTGAAGGGCTTTGGGGTGATAGCTAAGCTGATTGTGACAGACGGAACGAAAATCCGAATACTTGCGTAACTTGAATGTTTAGATCTACagatactgtattaaaaaataaaataaaacgggCAGATATTAATCTGTGTGGAGGAGTGTGTGACGGTGCAATCTTCTGTTGCagctgaagtttttttttctcaccttAACgattaagtactgtaatctgTTTCTTGTGTTGTGTGGCTCTGTGTTCGCATGAAAACGTgagcaacaataaaaaaaacagattgtttCACGAA

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0008184 glycogen phosphorylase activity molecular_function
GO:0030170 pyridoxal phosphate binding molecular_function

KEGG:

id description
K00688 PYG, glgP; glycogen phosphorylase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001769 True 3301 mRNA 0.53 18 15502070 15525306

Neighbor

gene id symbol gene type direction distance location
AMCG00001770 NA coding upstream 365 15493247 ~ 15501705 (+)
AMCG00001761 NA coding upstream 109394 15388046 ~ 15392676 (+)
AMCG00001759 rps6ka2,LOC107750746,LOC107717821,LOC107702677,LOC105021344 coding upstream 176332 15285864 ~ 15325738 (+)
AMCG00001758 NA coding upstream 235886 15264098 ~ 15266184 (+)
AMCG00001766 LOC106589815 coding upstream 383885 15016232 ~ 15118185 (+)
AMCG00001768 gins1 coding downstream 24285 15549591 ~ 15552415 (+)
AMCG00001776 NA coding downstream 52869 15578175 ~ 15610687 (+)
AMCG00001775 NA coding downstream 87706 15613012 ~ 15619118 (+)
AMCG00001781 NA coding downstream 154519 15679825 ~ 15690746 (+)
AMCG00001780 NA coding downstream 194554 15719860 ~ 15769808 (+)
G160200 NA non-coding upstream 84516 15402285 ~ 15417554 (+)
G160144 NA non-coding upstream 800614 14701134 ~ 14701456 (+)
G160129 NA non-coding upstream 869580 14629303 ~ 14632490 (+)
G160116 NA non-coding upstream 938701 14558766 ~ 14563369 (+)
G160107 NA non-coding upstream 975562 14525737 ~ 14526508 (+)
G160375 NA non-coding downstream 303470 15828776 ~ 15829766 (+)
G160463 NA non-coding downstream 589038 16114344 ~ 16114699 (+)
G160464 NA non-coding downstream 591899 16117205 ~ 16119266 (+)
G160542 tubb4b,LOC106575097,LOC105893757 non-coding downstream 751500 16276806 ~ 16278054 (+)
G160648 NA non-coding downstream 1374589 16899895 ~ 16902440 (+)
AMCG00001762 NA other upstream 63039 15432337 ~ 15439031 (+)
AMCG00001760 mpc1,LOC107725004,LOC106589821,LOC107693783 other upstream 167490 15331620 ~ 15334580 (+)
G160026 NA other upstream 1231880 14269615 ~ 14270190 (+)
AMCG00001691 NA other upstream 3168370 12329979 ~ 12333700 (+)
AMCG00001645 NA other upstream 4744212 10747489 ~ 10757858 (+)
AMCG00001814 ryr2,LOC106456445,LOC108410403,LOC106906861,LOC101062804,LOC103129799 other downstream 711956 16237262 ~ 16377860 (+)
AMCG00001841 NA other downstream 1654288 17179594 ~ 17182601 (+)
AMCG00001846 NA other downstream 1892045 17417351 ~ 17462934 (+)
AMCG00001881 NA other downstream 2662596 18187902 ~ 18209391 (+)
AMCG00001883 NA other downstream 2684703 18210009 ~ 18217138 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_011383 pygb coding NC_007128.7 CM002901.2 21126495 ~ 21152173 (+)
grasscarp (Ctenopharyngodon idella) CI01000312_00395776_00407820 PYGB, MGC80198, PYGM.L coding CI01000312 null 395776 ~ 407993 (+)