AMCG00001771 (banf1,LOC105900308,LOC107086546,LOC106536379,LOC106576720)


Basic Information

Item Value
gene id AMCG00001771
gene name banf1,LOC105900308,LOC107086546,LOC106536379,LOC106576720
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 15499553 ~ 15501793 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001771
GCGGGTCATGTGATCTTCCCCAATAAAAGCCGGAGCTCAGGTGACCCCCCGGCGTGGACAGCCGGGTCTCTTCATTGTCAGGCCAGGGTAGAAAGCTATTTATGAGAAAGCAGACATGTCAACCACCTCTCAGAAACACAGGGACTTCGTTGCGGAGCCCATGGGGGAGAAGCCCGTCTCTGCCCTGTCTGGCATAGGAGAGGTTCTGGGCAGGAAGCTGGAAGAGCAGGGATTTGACAAGGCGTCTGTGGTCTTGGGCCAGTTCCTGGTGCTGAAGCAAGATGATGAGCTTTTCACAGAGTGGCTGAAAGATGCCTGCGGAGCTAATACTAGACAAGCATCTTCATGTTATCAGTGTTTAAAAGAGTGGTGCGATACGTTCCTGTGAGGACGGAGGCCTTGGCTTCCTTGTTATGTCAAGCTTGTTACAAAAGGTTTCACAAACTTTTAACGTTTAAATGTtagtgtttaaaaattaaaaataaagcattttcacTTTTGTAATTTGAGCTTAAGATGCTGCCCTAGGATTTGTCAGAAGCTTTCCATATTATAGTGCTTTAACAAAAGTGATCTTTAACTAATTAATATGTAGAAGACCAGTTTGTTAGATGAGGACTAGAAGTGAAGagtaaatgtatattgtgtgtaaTTTCTTAGTGAAGGAGATGACAATGAATGCCCTGTTTGTAAGGATTTGCTCTGCTGTTTAATGCAATGTAGcgacattacaaatatattgccATGGAATACATGAA
>TU201753
AAAGCCGGAGCTCAGGTGACCCCCCGGCGTGGACAGCCGGGTCTCTTCATTGTCAGGCCAGGGTAGAAAGCTATTTATGAGAAAGCAGACATGTCAACCACCTCTCAGAAACACAGGGACTTCGTTGCGGAGCCCATGGGGGAGAAGCCCGTCTCTGCCCTGTCTGGCATAGGAGAGGTTCTGGGCAGGAAGCTGGAAGAGCAGGGATTTGACAAGGCGTCTGTGGTCTTGGGCCAGTTCCTGGTGCTGAAGCAAGATGATGAGCTTTTCACAGAGTGGCTGAAAGATGCCTGCGGAGCTAATACTAGACAAGCATCTTCATGTTATCAGTGTTTAAAAGAGTGGTGCGATACGTTCCTGTGAGGACGGAGGCCTTGGCTTCCTTGTTATGTCAAGCTTGTTACAAAAGGTTTCACAAACTTTTAACGTTTAAATGTtagtgtttaaaaattaaaaataaagcattttcacTTTTGTAATTTGAGCTTAAGATGCTGCCCTAGGATTTGTCAGAAGCTTTCCATATTATAGTGCTTTAACAAAAGTGATCTTTAACTAATTAATATGTAGAAGACCAGTTTGTTAGATGAGGACTAGAAGTGAAGagtaaatgtatattgtgtgtaaTTTCTTAGTGAAGGAGATGACAATGAATGCCCTGTTTGTAAGGATTTGCTCTGCTGTTTAATGCAATGTAGcgacattacaaatatattgccATGGAATACATGAATGTGTCATGCATAGGTTTAATTTTTGTCAAGGAATTGTTTGGAAACTGAGGGATTACTTACTGAAGCGTCTGATTAGAAATGGTATAATAAGCACAGACGACCAGTATAATGCCAGCTTTTATAACAATATTGCCAGACCAACTTAATccattttaacaattatttttttggttattttaacaCCTGTATATCAAGCATCTTATCACACAAAGGCCCAGgctaaatcaaaagtttgacccatctcttttctttctcttgaagacctttctttttttcttcccctatTAGAACATCAACACAAATATCAATCAAAACacttgcaaatgaaaataaaaccctaaCCCTACTCATATAAATCCAACCcacttcatataaaaaaaacattcaataaacaCTCAAAGCAGACGCTATCCTTACTTCACATTCcccaatacattcaaatatagtGACAACATTCCTCCTCTAACATGCAAAAGTAcaaaagcctttaaaaaaaataaaaaatacccaTAACTAAGTTGAATGGACTTCATTGGCTGTGTGCAGTATTTAAATGCTGTTAGGATAACCAATCAAAAAAAGGCCATCAAACTCTCATATAATACTGTCCTTACAGTTCATAAAGTACCATAGCTTGGGTTACAATCGGTTCAGTATTTCCCAGGTTGATCTCACACCAGAATCGCCGTTTAAGAAATGCACAAGTCCTCCCGACACTTTGGCTTTGACCCGAGTCCTCTGCTCAGTGTCTGTGTAGGGATTCGATGTAATGGAAAGCAGCACCCAGCGCCCAGCTCGTCTCCACG
>TU201754
AAAGCCGGAGCTCAGGTGACCCCCCGGCGTGGACAGCCGGGTCTCTTCATTGTCAGGCCAGGGTAGAAAGCTATTTATGAGAAAGCAGACATGTCAACCACCTCTCAGAAACACAGGGACTTCGTTGCGGAGCCCATGGGGGAGAAGCCCGTCTCTGCCCTGTCTGGCATAGGAGAGGTTCTGGGCAGGAAGCTGGAAGAGCAGGGATTTGACAAGGCGTCTGTGGTCTTGGGCCAGTTCCTGGTGCTGAAGCAAGATGATGAGCTTTTCACAGAGTGGCTGAAAGATGCCTGCGGAGCTAATACTAGACAAGCATCTTCATGTTATCAGTGTTTAAAAGAGTGGTGCGATACGTTCCTGTGAGGACGGAGGCCTTGGCTTCCTTGTTATGTCAAGCTTGTTACAAAAGGTTTCACAAACTTTTAACGTTTAAATGTtagtgtttaaaaattaaaaataaagcattttcacTTTTGTAATTTGAGCTTAAGATGCTGCCCTAGGATTTGTCAGAAGCTTTCCATATTATAGTGCTTTAACAAAAGTGATCTTTAACTAATTAATATGTAGAAGACCAGTTTGTTAGATGAGGACTAGAAGTGAAGagtaaatgtatattgtgtgtaaTTTCTTAGTGAAGGAGATGACAATGAATGCCCTGTTTGTAAGGATTTGCTCTGCTGTTTAATGCAATGTAGcgacattacaaatatattgccATGGAATACAT
>TU201755
AAAGCCGGAGCTCAGGTGACCCCCCGGCGTGGACAGCCGGGTCTCTTCATTGTCAGGCCAGGGTAGAAAGCTATTTATGAGAAAGACATGTCAACCACCTCTCAGAAACACAGGGACTTCGTTGCGGAGCCCATGGGGGAGAAGCCCGTCTCTGCCCTGTCTGGCATAGGAGAGGTTCTGGGCAGGAAGCTGGAAGAGCAGGGATTTGACAAGGCGTCTGTGGTCTTGGGCCAGTTCCTGGTGCTGAAGCAAGATGATGAGCTTTTCACAGAGTGGCTGAAAGATGCCTGCGGAGCTAATACTAGACAAGCATCTTCATGTTATCAGTGTTTAAAAGAGTGGTGCGATACGTTCCTGTGAGGACGGAGGCCTTGGCTTCCTTGTTATGTCAAGCTTGTTACAAAAGGTTTCACAAACTTTTAACGTTTAAATGTtagtgtttaaaaattaaaaataaagcattttcacTTTTGTAATTTGAGCTTAAGATGCTGCCCTAGGATTTGTCAGAAGCTTTCCATATTATAGTGCTTTAACAAAAGTGATCTTTAACTAATTAATATGTAGAAGACCAGTTTGTTAGATGAGGACTAGAAGTGAAGagtaaatgtatattgtgtgtaaTTTCTTAGTGAAGGAGATGACAATGAATGCCCTGTTTGTAAGGATTTGCTCTGCTGTTTAATGCAATGTAGcgacattacaaatatattgccATGGAATACATGAATGTGTCATGCATAGGTTTAATTTTTGTCAAGGAATTGTTTGGAAACTGAGGGATTACTTACTGAAGCGTCTGATTAGAAATGGTATAATAAGCACAGACGACCAGTATAATGCCAGCTTTTATAACAATATTGCCAGACCAACTTAATccattttaacaattatttttttggttattttaacaCCTGTATATCAAGCATCTTATCACACAAAGGCCCAGgctaaatcaaaagtttgacccatctcttttctttctcttgaagacctttctttttttcttcccctatTAGAACATCAACACAAATATCAATCAAAACacttgcaaatgaaaataaaaccctaaCCCTACTCATATAAATCCAACCcacttcatataaaaaaaacattcaataaacaCTCAAAGCAGACGCTATCCTTACTTCACATTCcccaatacattcaaatatagtGACAACATTCCTCCTCTAACATGCAAAAGTAcaaaagcctttaaaaaaaataaaaaatacccaTAACTAAGTTGAATGGACTTCATTGGCTGTGTGCAGTATTTAAATGCTGTTAGGATAACCAATCAAAAAAAGGCCATCAAACTCTCATATAATACTGTCCTTACAGTTCATAAAGTACCATAGCTTGGGTTACAATCGGTTCAGTATTTCCCAGGTTGATCTCACACCAGAATCGCCGTTTAAGAAATGCACAAGTCCTCCCGACACTTTGGCTTTGACCCGAGTCCTCTGCTCAGTGTCTGTGTAGGGATTCGATGTAATGGAAAGCAGCACCCAGCGCCCAGCTCGTCTCCACG

Function

symbol description
banf1 Predicted to enable DNA binding activity. Predicted to be involved in chromosome condensation and chromosome segregation. Predicted to be located in chromosome and nucleus. Predicted to be active in nucleoplasm. Human ortholog(s) of this gene implicated in progeria. Orthologous to human BANF1 (BAF nuclear assembly factor 1).

NR:

description
PREDICTED: barrier-to-autointegration factor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001771 False 758 mRNA 0.43 3 15500360 15501793
TU201753 True 1540 TUCP 0.40 3 15499553 15501768
TU201754 False 730 TUCP 0.43 3 15500363 15501768
TU201755 False 1537 TUCP 0.40 3 15499553 15501768

Neighbor

gene id symbol gene type direction distance location
AMCG00001773 NA coding downstream 25864 15450729 ~ 15473689 (-)
AMCG00001764 NA coding downstream 50440 15438824 ~ 15449113 (-)
AMCG00001763 NA coding downstream 140534 15336021 ~ 15359019 (-)
AMCG00001765 NA coding downstream 240937 15230372 ~ 15258616 (-)
AMCG00001755 mcph1 coding downstream 861815 14623800 ~ 14637738 (-)
AMCG00001772 NA coding upstream 23905 15525698 ~ 15548444 (-)
AMCG00001774 NA coding upstream 50900 15552693 ~ 15575397 (-)
AMCG00001777 ppp2r5d,LOC106605890 coding upstream 110883 15612676 ~ 15640633 (-)
AMCG00001779 NA coding upstream 141026 15642819 ~ 15654841 (-)
AMCG00001778 NA coding upstream 153578 15655371 ~ 15677438 (-)
G160132 NA non-coding downstream 936048 14559152 ~ 14563505 (-)
G160080 NA non-coding downstream 982268 14420937 ~ 14517285 (-)
G160094 NA non-coding downstream 1005904 14491898 ~ 14493649 (-)
G160085 NA non-coding downstream 1019194 14474242 ~ 14480359 (-)
G160040 NA non-coding downstream 1183410 14311141 ~ 14316143 (-)
G160311 NA non-coding upstream 92814 15594607 ~ 15595355 (-)
G160319 NA non-coding upstream 102050 15603843 ~ 15610716 (-)
G160387 fbxo28,LOC106576958 non-coding upstream 290203 15791996 ~ 15796358 (-)
G160538 NA non-coding upstream 732622 16234415 ~ 16235803 (-)
G160548 ryr2,LOC107395022,LOC102799451 non-coding upstream 813534 16315327 ~ 16315563 (-)
AMCG00001756 NA other downstream 928626 14550689 ~ 14570927 (-)
AMCG00001733 NA other downstream 1026394 14463730 ~ 14473159 (-)
G159976 NA other downstream 1347998 14147628 ~ 14151555 (-)
AMCG00001710 NA other downstream 2394129 12995637 ~ 13105424 (-)
AMCG00001704 fam135a,LOC107601029,LOC107747270,LOC107665594 other downstream 2522527 12942361 ~ 12977026 (-)
G160255 NA other upstream 2518 15504311 ~ 15520639 (-)
AMCG00001784 NA other upstream 189776 15691569 ~ 15702500 (-)
AMCG00001791 fam98a other upstream 326965 15828758 ~ 15833806 (-)
AMCG00001843 NA other upstream 1589560 17091353 ~ 17092549 (-)
G160817 NA other upstream 2029073 17530866 ~ 17531990 (-)

Expression


Co-expression Network