AMCG00001774


Basic Information

Item Value
gene id AMCG00001774
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 15552693 ~ 15575397 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001774
ATGAGCGGCAGCCTCGCTTTCGATGCCGGCGCAGTACCTACGGGCTGGCGGAGGCGCAGGCGGAGCAGAGGTGCCAGCGCCGGCGGGGAGGATGAGCGCAGCCTGCTAACGGATGGGGACGGTTTTAATCATGGAGGGAAACTCCGGATCTACCGCGATCACACCCCGCCGATAGCAGCGGGAGCAGAGGCGTGCAGCCGGGGACGTCTGACTGCCGCAGCATGCCGTGGGATGGATGAGGACGAGCAGACCCGCTATGTCTCGCAGCTCAGGGAGGTGTTCGACAGCTGCGACACCACTGGCACCGGCTACCTGGACAAGGAGGAGCTGGCGGAGCTGTGCCGCAAACTGCACCTGGAGCCGCACCTTCCCGTGCTGCTGAACACGCTGCTGGGGCCGGACCACTATGCCAGGGTGAACTTTGAGGAGTTTAAGGAAGGTTTCGTGGCCGTGCTGTCCCACTCCCTGGAGCTCAGCACCTCTGAGGATGAGAGCAGCTACCTGGAGCCAGTCGTCCCGGAAGAGGTGAAGCCCAAGTTCGTGAAGGGGGCGAAGCGTTATGGGCGCAGGTCTCGCCCTGAGGGTCCCGACTCGGAGACGAAGATCACTGCGGACTGCGCAGAGACCCTCCCCTTCAGGGCGGCCAAGGCCGACCCCTTCCCTGTGGCCGGCAGGCGGTTGCAGCTGAGACGCTCCACGTCGCTGGAGAGTGTGGAGAGCCTCAAGTCCGATGAAGAAGCGCCGAGcaataaacaaactgcacacGAAATGTTTGAGGCAGAAGGCCAGCTGAAGAAGTGGAAGCCGGATGTGTCGAGCAGCCCGAGACAGACGGACAGTCCACAGCAGGACGTGACGGATGGACAGATGCTGGCGATCTGGGAGGAGCTGGGGGTGGGCGTCAGTGGCTACCTCAACAGACAGGAGCTGTCCGTCGTGTGTGAAAACATCGGCCTCCAGGACCTCCGCACCAAGGAACTGGACCTGCTGTTCCACAAGCTGGACACGGACCGGGACGGCCGAGTGGGCCTGAAGGAGTTCCAGAGGGGGCTTTTCCGACACAACCCCTCCTCCGCAcccacctcctccacccccaTTAAGCCCCAGCCCCAGCGGTCTCTCAGTCAGGCCTTCAAGGACAGTGCTGGCAGGTCggcttccccctctctcctctcagccACCGTGGGACCCCGCCTGCTGTCCTGCATCGACGATGGCTCCGGCTTTGTGACCGCTGATCAGGTGATCACCATCTGGAGCGACGAGGGCATCAGGAACGGCGGTGGCATCCTCCAGATGCTGGACTTCCCTCTGGACGAGAAGCTCAGTCTGGCTGAGCTGACACTGGCGCTGGACAACGAGCTGCTGGTCAGCGGGAATGGACTCCACCAGGCCGCCCTCGTCAGCTACAAAACTGAAATCCAGTTCCTGCATGTCCAGGCAGAGCAGGCCTGTAAGGAGAGAGACAAGTTCCGGGCCGACCTGGAGCGAGCTGAAAAGAGGAACGTCCAGCTGGCCAGGGAGGTGGATGACCGGCATGCGGCAATGGAGACCCTGAATGAAAGCAAGATCAAGGACATCGAGCAGGAGTACCGGGACAAGCTGGCGGCCATGCGCAGCGAGGCGGAGGGCGAGACCGAGAGGCTGCTGCAGCAGGCCGGCCAGCACAGGACCCgtctggaggaggagctggagagcGTGCGGGCCCAGGGTGTCGGACTGAGGGAGGACGTGAGCGCCACAGTCCAGGAAAACATCCACCTGGAGAAGGAGCTGAGTGAGCTGAGGAGGAAGCTCTCCGAGTCCGAGAGAACCGTGTCCAAACTGCAGAGGGACCTGGATCACCTGCTGATCGACAAGTTTGGCAGCTTCGACTCACTTGGCACTGGTCTGCTTAGCGAGGAGGAGCGCTTCTCCCAGATAATCAAGGAGTACGAGCTGCAGTGCAGGGGCACTGTGTCCCGCTTTCCTGTCTTCTCCTGTGCTCTGTTGCAGGAACTGCGTGACAGGAACGACGAGCTGAACACCGAGCTGGAGATGCTGCGAGGCTCACGGCCCGACAGGAAGTCGCATCAGACACAGGACAGCAGGGCCGGGCAGAGCAGGACTGGCGTCCGCCCACTGCCCGCTGACTCTGACTCCGATGATCAAGACATCCCCAGGACTGATGAATATCCTCGTGTCAGAAGAAAACTACACATAGCTGACAGAAATGGTTTGGGTTCTCTCCAAAATGATCCACCTGACATGAGCATCGAAACTGAGCTGGCAATGCAGCAGCTGAAAGATAACCATCAGCAGGAGGTCCAGGATCTGAAGATCCAGCTGGAAACAAAGGTCAATTTCTATGAGAGGAATATCGAACTGATGAAGAGGAACATGGAGGTGGAGCGCAAGGACATTGGGGAGGGCTTCAAACTGGAGATCAGCGAGCTTGAGGAGCAGAAGGGCCAGCTAGAGGAGAGGTGCGAGCGGCTGCAGGCAGCCGTGGCGGCTCTCAAGGCCCAGCTGCAAAACGCCTCCTTGGGCCCGGAGCAGGAGAAGAggctgctgagagagagggcCGAGCTGGAGCAGAACTATGCCAAGGAGATCTCCAATCTGGTGCAGAGACTCAGCGCAGAGAAGGaccagctggaggaggagctcACCAGCCAGAGGGAGCTGGAAGTACAGCAGATCAGGAAAGAAGCAGTCGATGAGGTAGAGCAAAGGTTGTCCCAAATTAAATCTCAGCACGCGGAAACCCAGAGGACACTGTCGCATCAGCTGTACTGCGAGAAGAGTTGCCTCCAGAGCCTTCGGCAGCAGTACGAGCAAGACCAGCGTATGTGGAGAGCTAGGGAGCAGGACCTCCATCTGGAAAGCAGGAAGGACAGGCTGAGAACTGAGGAACTGATGAGTGAAGAGCAAGCCAGGATCTGCAACAGCTTTGCTCTGGAGAAGAAACGGCTGGAGGATCGACACCTGGAGCAAGTAAAGCTGTTGCACAGTGAGATCCAGGAGCTGAAAACACACGTGGCTGAGCTGAAGAAGAAGGAAACCCTCCTGGAGAACTGCACCAAGTCGCTGGAGGCCCAGGCAGCGCTTGTTCAGCGGCTCACTGCTGACCTCAGGACCAGAGAGGAGGAACTGGAGAGGGTGACAAAAACAGTGGACGAGTTGCAGACGCAGCAGGAAGACAAGCTGATCTATGTACAGGTCAAACTGGAGTCAGAACTGAAGGAGAAAGAGACCGTTCTGGAGGGCTATACTTCTGCCCAGGAAGATGAGCTGAGAGTTCTGAGAAGACGGAGACGACACGGCAAAGGGGAATTGCTCCTCCAGTCTGACGATTTAAAGTCTGAGGCAGAAGACAAAGGAAGACTGGTGGAGGGACTGAACAGGCAAAGTATTGCACGTGAGCCACTGCAAGCCCAGCTTCTAGATGTGGATGGTTTGAAAAGGAAGGAACAAGACCTTCAAGATGAACTAGAGCAGGAAGGAGCCAGCTTGCTCTCGATCCAGGCGAAACTGGAGTCTGAGATGGAAGACAAGAGGTGGCTCCTGGAAGACCAAACGCATTTAGCTGTCGTTTCAAACAGTCTGTCCTCGCAGGTGGTGGAGAAAGATGGAGAACTGTCAGAGCTCAGAGAGACCATAGACGGCTTAGAGTCACAGTTAAAGCAGAGGGACAGCCTGATCCTTGAGCTACAGGTACGACTGGAGTCCCAGGGCAGAGACGATGACTTGGCCAAGAGGTTACAGCAGATGGAGTTCGAGGCGCAGTGCCAGTTACAGCAGGCCAGACAGGACTtcgaaagggagaaggaaaaaatgaaagagcAGCTGTTGCAGATGGAGAAGCTGGTAACCGATCTGGAGACGGTCATGGATGGTGGCATGGCACACAGGGCTGAACTCGACAAGGTCAATAGTGAGAACAGTGCACTCAAAGACCAGCTGTCTGCACTCCAGGAACATGTTCAGAAACTCAACGTTGATCTCAACAGAAAAACAAAAGAACTGGAACAGGTGATGAGTGAAATGGAGAAGAAACAGAGTGACGTAGAGCTCGTCTACAAAGAGAACGCCAGGTACAGGGCCGAGGTACTGGAGATGAGCAACAGGAACCTGCAGCTGAGCAGCGAGAACGCCGAGCTGAACAGCCACATCAAGGCTGATCAGGGCGCCATCCAGCTGCTGAACGAGAGGCTGGCCGAGGTCTCGCTTCAGAAGGGAGAGGAGGCCGCACTTACCAGgcagctgcaggaggcctcGGCCAGGCTGCAGCGAGAGCAGCTCCAGCAGGAGGCCAGCTGGCAAAGAGAGCGAGAGCTGAAGGACCAGGAGCTGCACCTCGCCAAGGAGCAGCTCCAGCACCTGAAGGCGGTGGAGTCTGAGCTGACTAGCCTGGCCCTGAAACACCAGTGGCTGGGGCAAGACAAGGACAGGCTGGAGAAGGAGGCCGAGGAGAGGAACCAGAAGATAGAAGAGTTACAGGCCTCCCTGCAGGCCCTCAGCAATCAGGTCGACCAGCTGCACTCACAGCTCCTGGCAGCCAATCGGGACCGGGGCCTTCTCACTGAGGAGgcagcagccaatcagaagaGGTTGGAGGAGTCTATGGAAAAGATCCAGGAGCTGGAGGCCAGCGCTGCGCGGCTGCAGCACGAGAAGGAGCAGCTGATAGTTGCACGGcggcagcaggagcagcaggagGTGGAGGCGATGCAGAGTCGAGAGGCCGAGCTGAGGCACGTGACCCAGGAGTGCCAGGCGCTAAGGAGCAGACAGGTGCAGCTTGAGTCCGACCTGCAGGACTCCCGGGACCAGCTCCTAGAGGCCCGCACCTCCCTCACGCTGGCGCAGTCACGGCATGCGAGGGAGCTGGAACAGCTTCGGGAGCGGGCGGACGCGGCACTCCCCAGGGAGCAGGCGCAGTCGCTGCAGGGGCAGCTGGTGGAGGAGCGGCACCGGGGGCAGGAGCTGCAGGAACAGCTCCAGGCGCAGGCGCAACAGGCTGGCATGCAGATGTCTCTGCAGCAGGAGCAGTATGAGAACGTGCTGAAACGGATGGAGGAGAAGATGGAAGACGTCGAGGCCAAACTCAGGAACCTCCGGGTGATGCTCCAGGAGAAGGTGGACCAGCTGAAGGAGCAGCTGTCCAAGAATGCCAAGTCGGACGTGCTGCTGAAGGACCTGTACGTGGAGAACTCGCAGCTGATGAAGGCCCTGCAGGTGACGGAGCAGCGGCAGAAGAGCGTGGAGAAGAAGAACTTCGCTCTCGAGGAGAAGATTGCCGCTCTCAACAAGCTGCTGCGCAAGATCGCCCCAGCCACTCTCACGGCCTAGGCCCGGGACCCCCGCAGACTGCTGACCGTTCCCGCAGAGCCACCGACAATCACCCCCAACCTCATGCCCTATCGGTGTAGTTCCCCTTGCACAGACCATGGCTTTATGTACGTCTGGATTGATGGGTGAATTTCATTCTGTTGCACTATATGTTGCAAATCTGATTTCTCAGGATGGGGGGGAggttttatacacaaaaaacatgtttctgccATCgcagtgtatgtatttttattttttctgtatctgCATCTATATCAAATTTgaaccaatatttttttttgtgcggGATCAATCATCAGTTCGTCTTCTAAGACCGCCGGTATTATATTAAGGTACTGAACACTGTGAAATAAGGCAACTGGTTTGCTGAGTGCAAGGCAGTGTGATCCTTAATAACAGCAGCTGCGGACACCCTGCCCGGACCATGCGTGTTTTCTTTGCTGCCCCCCATTTCTCCCTCCACAGCCGGGGAAAAAGGGCAGTGATGGCAGATCTACATTGAATATCATAGTATTTCAGAAGAAGGAACTGGAATATTCCTTTCTGGGGCTtggtaaagaaaaagaaaaaaagaggaacatcttccaaaaaaaaacaccaccacttGAATAATGTATCTTTGAGGTACTAAAAACTGCATAGAGGTACAGTCTAGTAATTGAAATGGGGAGGAAAGGAAGGGGGAATATGTTTTTTCAGAACCCAGTCAGAGATTGTGTATACTTAAGCAGGTGTACAGTTTTGATACAAGTGTACATACCTACAGTTCTTCCTAAAACCTTTTTGAAAGCGCACACCTTTTGTAACTTGATGCACTGCTGTACAAACACTTCCGTTTCTAGTAAATTATTCATGTTCTAGAATtaagagattgtttttttttaaatgttgttaatACTATGAAAGCCCACAAATTGAGTTTATTTCCCcaagtattatgtttttttggtttcttcacCTTTGTTCGTTCTTGACTGCTAGATCCTTCAGTGGgttcaaaaagcaaaaaatacattccattgtaaaaagtaaaacctGTACAACATGCCCATAAAAGACAGTGTTAACcttgaaataaatgcaatccAACCTC

Function

GO: NA

KEGG:

id description
K16477 NINL, NLP; ninein-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001774 True 6430 mRNA 0.56 29 15552693 15575397

Neighbor

gene id symbol gene type direction distance location
AMCG00001772 NA coding downstream 4249 15525698 ~ 15548444 (-)
AMCG00001773 NA coding downstream 79004 15450729 ~ 15473689 (-)
AMCG00001764 NA coding downstream 103580 15438824 ~ 15449113 (-)
AMCG00001763 NA coding downstream 193674 15336021 ~ 15359019 (-)
AMCG00001765 NA coding downstream 294077 15230372 ~ 15258616 (-)
AMCG00001777 ppp2r5d,LOC106605890 coding upstream 37279 15612676 ~ 15640633 (-)
AMCG00001779 NA coding upstream 67422 15642819 ~ 15654841 (-)
AMCG00001778 NA coding upstream 79974 15655371 ~ 15677438 (-)
AMCG00001783 lrrc73 coding upstream 197933 15773330 ~ 15779288 (-)
AMCG00001792 yipf3,LOC107696384 coding upstream 205821 15781218 ~ 15784155 (-)
G160132 NA non-coding downstream 989188 14559152 ~ 14563505 (-)
G160080 NA non-coding downstream 1035408 14420937 ~ 14517285 (-)
G160094 NA non-coding downstream 1059044 14491898 ~ 14493649 (-)
G160085 NA non-coding downstream 1072334 14474242 ~ 14480359 (-)
G160040 NA non-coding downstream 1236550 14311141 ~ 14316143 (-)
G160311 NA non-coding upstream 19210 15594607 ~ 15595355 (-)
G160319 NA non-coding upstream 28446 15603843 ~ 15610716 (-)
G160387 fbxo28,LOC106576958 non-coding upstream 216599 15791996 ~ 15796358 (-)
G160538 NA non-coding upstream 659018 16234415 ~ 16235803 (-)
G160548 ryr2,LOC107395022,LOC102799451 non-coding upstream 739930 16315327 ~ 16315563 (-)
G160255 NA other downstream 32054 15504311 ~ 15520639 (-)
AMCG00001771 banf1,LOC105900308,LOC107086546,LOC106536379,LOC106576720 other downstream 50900 15499553 ~ 15501793 (-)
AMCG00001756 NA other downstream 981766 14550689 ~ 14570927 (-)
AMCG00001733 NA other downstream 1079534 14463730 ~ 14473159 (-)
G159976 NA other downstream 1401138 14147628 ~ 14151555 (-)
AMCG00001784 NA other upstream 116172 15691569 ~ 15702500 (-)
AMCG00001791 fam98a other upstream 253361 15828758 ~ 15833806 (-)
AMCG00001843 NA other upstream 1515956 17091353 ~ 17092549 (-)
G160817 NA other upstream 1955469 17530866 ~ 17531990 (-)
AMCG00001865 NA other upstream 2232621 17808018 ~ 17810097 (-)

Expression


Co-expression Network