AMCG00001778


Basic Information

Item Value
gene id AMCG00001778
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 15655371 ~ 15677438 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001778
GTAAagctgtgcatctgtgtgcaaATATCACTGTAAACAAGTCCCAACTAAACCGGCGATCCGAGCGCGTCGTTGCTGAAGTGCACAGAGAGGCTGAGCTCCACTCCGCGCCTCCGCCGTCGTGTGCCGTGGATGTGGTGCTGCAGGCCGCGCAGACGGGGACATGTTCGGCGGCTGGCCGAACCGGAGACTGAGACTTCCCAGGCCAGGCGACCCGTCGTTTACGGTCGTCCCGTCGCCCCCACCTCCCGACGAGTACTGGGACGGGCCCCCCGGTCCCCCCGGTCCCCCCGGGCCTCCGAGGTTCAATGACTACCCCGGCTCCGGCAGCGACTACAGGAGCGGCCAGATGAATGACAGAGACTTCGCTCCGCCGCCGATGGGATGTCCAGACCAGAGCGGGATGTTCTTTGGTGCGCAGCCGCAGCAGCACCCTAGGGGGATGCCAAGGCAGGACTTTCACCCGGGGCCCTGGCGCTCCCAGAAATACGATGAAGAAGAGAAATGGCAGCACCCTGCCTTCCCTAAGGCGTACGGTGGGTGCCACCCCTCAGGACCCGGCACCGCCCCCCCTGGGATGAAGCCCCCTGAATGGGGAATGCATTCCCCTCCTGCCCATCTGGGAAACCCGGGGAACGACTGGATGGGAGGCGCTCCAGATACTGAATTTCACGAACACAACCGGCTAGACTCCCCCGTTAACTGGAAGAGCAAGGAGCCAGCAAAAGACAAGAATAAAAATTCCTTACAGGCTGAGGCTTTGAAACCTGGTCGCTTTCGTGGGACTGTGTCATTTGTCAGTTCCACCTATGGGTTTATTCAGAAGGAGGACAAGAAGCAGATATTTTTCAACTTTAAAGGGTTCAGAGGAAACCCAGGAAGTCTGCATCCAGGACTGAATGTGGAGTTCACCATTGTGAAGAAAAAAGGGAAAGACAGAGCCACTGATATTAAGGTTGCCTTGGGGGGGACTGAGGAAGCTAAGTTGTTCAGCGCAGGATCAGAGCTGCTGTTCGGAGAGGACGACAGCAGTGTGACTCTACTGCTGAGAGACCGGGTGCAGTTCAACATCGCCAAGAGCCAGTCCGGAAAGCAGGACAGAGCCGTCAACATCACGGTGCTGCCAGACTCTTTCCACTACACCAAGGAGACCAGGGAAGCgGgtgtgattatgaacatgaaagACTCCACTGGGTCCGTCATGTCTGCAAACTGGAGCAACCTTTCCTTTGACGTGAGGGAGAACATGGGAGAGACCTCCCTGAATATCATGGATGAAGTGGAGTTCACTGTGGTTCCTAATACAAGTACAGGGCAGGAGAAGGCAGCGAGAATAAAGAAGCTTCCTGACGGCACTGTGTCATTTGGAAGCCAGGTCAAGCAGAGGATTGTGGAGGTCGTGGAGAAGCAGTCCGCTCTGACTGCCTCTAATGAAAAGGCTGTCGGGCCGGACCCTTTCCCTGGCCGTCTCTGGGTCAGAGTCAACAACACGGATCAGAAGCTGCCGTTTGGGGCGAGTGACGTGCAGACAGAGGTGACTATGCTGGAGGGGGATCATGTACAGTTCAACGTCGCAACAAACCGCTGCACCAAAGTGGAGAGAGCCACCAACATTGAGATCCTGCCCGACTCGTTCCACTTCACCAAGGAAGCCCGGGAAATGggtATTATAGTTGACGTGAGAGCGTCCTTTGGATTCATTAAGTGTAACCGGGACCCGAGGGTGTTCTTTCAGCTCAGTGAGGTCATGGACGAGAGCAAGCTGAGTATCTCCGAAGCGGTGGAGTTCACAGTGATTTCCGACATAGCTGATGGGCAGAGGGAGCAGGCAGTACGGATCAAGAAACTGCTCCAGAGCTCAATGACTTTGAGCTCTCAGTCCATAAGTGAAATCACTGGGGccaaagggaaagaaaagAAGAAAATGGCCTTCAAGTTCCTCAAAGACACAATAGGTGGCAATATACCCAACCTGAAGGTCAACTTCAATTCCTTTGATGAAGAAGACGGTTTCAAAGGGGAGAAccttggggggggggagtaCAGCAAACAGGACCATGAAGATGTTGACATGCCAGTGTTGGACAATGAATACCACTTGCAAAAAGAGGAGGCTCTAAAGGACATGGCTGTGGAGAGGGTCCAGATCCCAGGGTTTGAACTGCAGTCGGAAGACCTGGGGAGTGGCCCTCAGCTGCCCAAAGACACCGAGTGGAAAGTGGAGAGCAGACACCGAGGGCACAGTCACAGTGGAAGCCAGGAGCCTGGTGAAAACAGCTGTAGAAAACGCAGTCGGAGCCGCAGCAAGGAGAGGAGCAGGAACCACAGCCGGCGGCGTAGTCGGAGCCGGGAGCGCAGCGGCCATAACAGCCGGAAATGTAGTCGGAGCCGCAGCAGGGAGCGCAGCTGGAATCACGGCAGGAAACGCAGCCGGAGCAGAAGCAGGGAGAGGAGCGGGAACTGCAGCCAGAGACGCAGCCGTAGTCGGGAGCAAAGCCGCGAGCGCAGCGGCCAGTGCAACCGGAGGCGCAGCTGGAGCGGCAGCAGGGAAGACGGCAGCATTCGCCACAGGGGCCACAGCGACCGGCGCAGGAGCAGCAAGGGCAGCGGTCACAATCGGGACAAAGACAGTCAGAGTCCTATGCCCCATCCTGCAGCGCCCCAGGGTTTGGGGAGCAGTGACAGTTTCTGGGATAAGAAGCTCGTGAACAAGAAGAGGGAGCTGGAGATCCTGGAGCAGCAGATCGCACAGAAGAGAGCGCTCATAGACATGGAGCAAGGTGGTCACAAGGAGCCGGAGTCCTTCCTGCCCGTGGAGGATGAAGACTACAGGCCAAGGCTTCCTCCCGTGGAGGCCGAGAGTTACAGGCAGACCAAGGACAGCCAATCATCTGCTTTGCCTATAAAATCCATCTTGAAGAAGCGGAAGGATCCGGGTATGGAGCCGGACTTGAGCACCCAGAGAGACGTCGGCAGTAAGACGAACACTAACTTAAGCACCCAGATCGAGCGTTTCCTCAACACCCTCAACAAAGGGGCCGACTCGGGCCTTCTCTCCACGCTGCTGAGAGAAGCACGGGAGGAGGTCAGCCAGGCCGAACCCAAGAGGCCATTCCCTCGGCATCCTTTTCCCTATGAGGACCAGTACAAAGATTCATTCAGGCGGAAGTCAGAGGAGCCAGACGACTCTGAGGGGAGTCCTAATGATTTCCTGCTGCCGCATGAGAGAGCCAGTCAGGATGGCAGCGGCTTTTCCAGGATTTTAGGAATGAAACATGACTTGTCCAATTCGGAGGAAAACTGGAGAGGTTTCCTACGGGTTGATGATGAGGAAAAGTTTCTCTATGGTGAGGGAGCATCTACAGACCAGCACCAGCCTAAAACCACCCTGGCCAGGATGCAGAGCCCGGCAGACAcgaaggaggaggaagaggaggtgggggaggaagaagaagatgagACGTCAAAGTATGATAAGATCCAGGCGTTGCTCCAAACGATAGGGCTGGATCTCGGGATGGCGGAGGTAAGCAAGCTGGCGCTGAGGACTCAGGAACGCCTCTATGGGAGCAAGCGCAAATCGAAGCCTGGTTTCTCGGTCAAAGATCAGGACAGAAAAAGAGACGCCAGGGAGAGGCTGGAGAGGCAGCGCAGCCAGACCGAGTCCCCGGAGTCAGAGCGTCACCGCCCCATCTCGCCCCCCGCCCCACTCTCACACCCCACGTGTGCGGAATACACCGTCACGCAGCAGGAGAGGCGAAAAGAGATCACGGTGCTCGATCATGGTGCCAGTAAGGCATGCGAATCCTTTTCACCTTCTCCCAATACACCCTCGCCCTCCATACACGGTTTCCCTCCCACTCCGTCGGCGTATTCAGTGACACAGTACTCTCAGTATCAGATTGTGGAGCCCTCAGTTGACTACGAGAGGTATGCCACACCCTCCATGGCTCCCAGCTGGCCTCATTACCTTCCTCAATCAGCGGTGCCTCCTAATACTTTTTTCCACAGTCCAGATGGTTATCCAGTAATGGTTCCACCCCCCCTGTTTCCGAATTCGCCATCAATCGGGCCTCCTCCCTTCTCACCGGGTCTTCCCCCCGTCCCTCCACCTCTACCCATTGGACACCCGTCTGGCCTTTCCCCGTTCTCAGCTGGGCATATGCCAGTTCCTAATTATTTCCCACAGAACCCCCTAACCGGACCCCCTCAGTATCCACCTCCAGGGGGGCCTATGTTTGGTCTCCCAGAGCCGCCCCCGTCAAGTGCTCCTGTCGTCACCTCGGCGAAAGCGCAGGATAAAGGGTCCTCCAGGCGCTACTTACGGGTTATCGAGACGGTGAAAGTCAAACAGAAGGTGAAcgtcacaaacaaacaacagcccACAGTTAAAGTGGCTTCCGCACCCCAGCCGGTTAAGGCTTCCTCTGTCTCCGCGGTGAAGACGGGAAACAGCAGCGTGACGATAATATCTGAGCAGGACATCAAAGCCAAACAGAAAAAACGGctGGAACAGTTTAACGAAAGGATGAGGCAGAAGAAAGAACAGAAGGATGctcaaatgaaaagcaaagatGCAAACAAGAATTTGCAAGGTAAGACCTGCAAACAGGTAAAGAACGTTTGGATTTGCGGCCATTCACTTGTGTTTTGGGCTGAGAAGAGAGCGAAATCTCCTGAGTATGGTATGCAGTTGGGCATGGACCCAAACTGTGTCCGCTTGTGGTGGAAAGGCACACAAGGGATGGTGTGGGACCAGCTGCTTCCGATGCTCCTGCAGATGAAGGGAACTTGGCCGAATCCCGATGTTATCATCATGCACATCGGTGGCAATGACCTGGGCAAGTCAAAGACTGAGATTTTCATTTCCACCATTAAGAAGGACTTGTTGTCCATGAAAAGCATTTTCCCAGGCTGCGTGTTGGTCTGGTCTGATATCCTGCCTCGCAGCACCTGGAGGAACACGGAGAACACCGCCGCCATGGAGAACATACGCAGGCTGACCAACGAGAGGGCGAAGAAGGTCCTCGAGTCGATGGGCGGAGTGGTCTTGAGACACAACCAAATCCAAGTTGACCCTAAGTCCAGCATGTACCGGCCTGATGGGGTCCACTTGTCGGACACGGGCATTGATATGTTTAATATTGACATGCAGGATTTCCTGGAGAAATGGGAAAGCGAGGCAAAGTAAGGAGATGGTGAAGTTATACAGATAGTGGACTGCACCAGTGATGAgattgtcattgtgggttttttgtgttttgttgatgttgcaCACCTCCCTTAATTTTTAAGGCAGGGGATAGTCTAGTCTCCAGGCTGGGCGGTCAATTTGTGCACGAGTTGAATGGACGGCTAAATGCTTGAGGCCAGAAGATTGTGTTCTATGTATTCgtgtatataaaaacacacattattttattagatgAGAAGATCTATAACTCTTCTGTATTGTTTAAAGTTGGAagtgtacttttgtttgtaattaaaataaacgtTTCATTTCTCAATATTGGTGTCATTGGGTGCTTATTCACTGATTCGCTGCTTTAAGTGATGAATAATTAGCTTGTTCTCATTTGATGATGCTCTTCGGATTCTGTTGCTTTTTGCCGCACAAAAAACTGCGcctgtattgttgttttttggggtgGGCATTTTAAGACGTGTATCTTGTTAAGCGCCGACCAGTGTTAAAGcccttgttttatatattttgatgagGTCTAAACattggcatttttattttatttggtttaggtattttcttatattgtaatacaaatgtgtgctATGAACCAAAGCCAGGGAGAGCAAAGCATAACTGGAGGATAGAGACCTTCAGTTATTATCAGTGATGTAGCACAGGCACATTGGCAGGTTGGTAGGGGCATACTAAACCTATCGTGATCGGAGAAGGCGAGGGATTCGGGAGTGGCAGTGTAGGAAGGTAGTCGCTTGACAGTTTGCTAATTTGCCACAGGCCGGTAAGCTGTAAGGTACATGTGAGGTGGGAAATAAATTAACCGTAATTGCTTAAAAAGAAATAATTGCCAGGGATGATGGATTAGCCCAGATGATGTTAAACTGCACCCGTCTCGGCTTTAACAAATTTTTATCATTAACAACATCAATTGACATGCCAGAGAGCATCTGTTAGCTTGCCAAATGGTGGTCACTACTTTCTCCCATCTCCAGGTGATCTTGAAGACTGTTAGATTGCTCTTTCCAGGATGAATCCAAATCATTCGTACAGGTTGGCACCACTTCTCGTACGGATAAATCACAGATCCTACAGCGTGCAGGACCGAAGAAGGCTGCTACAGAAGCGGATTggacaaaaacatgaatgttcGGGTTCGTCTGTGAAGAAAAGGGACTGATTTGGCTGTACAGCATCTGATGCTTTGGCTTAGAAAGACAGTTTGGAGGACATCTATATGAATGTCTTTTTGCACGACAAAACGAATATCTAGTTGCCATTGGCAGCTTGATGGAGTGCTTCTGAACAACAGCAGATTGggatttttacaatattttgaaaacattttggataTTTGACCCTTGCATGTATAGtcaatgtaaatgtttccaTATCAAAGCTTTGTAAATTAAGATAGTATTCAattatattgttgttgctggttattttataactgtttaattgtattctgtatttgttttgcgaAGAATGTTTCAAATGCTGTTATACTTGTTTTTACCTTATTGTATAAAATCAATGTCTACATGCTTTTGCTCTATATTGGTTGTCTTTGGGATGGGAcaattgttgtctttttttgttggtttaaatGTAACCCCCTCAAGACTACACAATTAGATGTTGACATATTGGGGAATGTCTAAggccacagaaaaacaaaatgtttttaattatgttatgtCATGTAAAAAATCCAATTTTTCTTTGGCACCCACAGCTGTGgagtctgtttcctgtttctgtatttcagttgTGGGTGTTACAGATTACCTGCTAACACTACACTGAACCGtcagtttagaaaaaaatgtgattcaAGTTAACATCTTGTACCAAGTCATTCTTGGGTGAAATAAAATACTAGGTCTGGTATATTCTTGAGTTACTGCTCTTTTTATCCCATAGACTAAGTATGAATGAGAAGAAGCCTCTTCATCCGACTTAATTATAAAGTGGCAATGTGGCATTGGATATACTTAGGCCAAGGGAATGCAGATCTCCTGTAACATTGCTTACATCAGCTCACCAATCCCTGCTAATCCACTGACATAATCCACCACTTAATTTAACTGGGTGATGGTTTTCACTGTTGATGGTttatctgcaaaataaacaaagttcATTTACCTCTCCTGCATGCCAGTCAGTTGGTTTCTTTGTGGTTAAGGTTCCCTCAGATGTAGGGTAAGTTTTCTTATTTCAATCATTTAAGTTCTACTACAAAATGTCAGGTACTAAATTGCACATCAGTGCTCTAGTATTGATGCAACAAAGTCACAGGTAAGCTTAAATACCCAAGTTCTGTTTAGAGATCTGTGTAGTAGGTATATGCACATAACTGCAATAGTTTAGAGTGCTGCATATGTAAACATCAAGATGCCTGgtaactttttaaagttttttatatatataaatacaggcTTTATTGAAGTGTATTGCATGTTTGTTAAATGGAGCAGCTAGTTTAATTTTGgattcttattttaattgtagcaGCGAGTGTTTTAGGTACCAGTACTAAAACTGGTTGTGTGTGAATGTACTTTCTTATGTAGGGCAAGAAGGCCTGTATCCTGccttaaataaatgtagacTGAATTCAGtcactttaattgttttttcatctctgtAGGTTACATTTATCTTCAGCTCAACAGTTTTAACTGCTTCAACACTATGCAGATTTCCATGTACCCCAAGgtcagttttttgtgtgttttataaatgttattctttaaataaagtcAAATTTATTATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001778 True 7982 mRNA 0.49 17 15655371 15677438

Neighbor

gene id symbol gene type direction distance location
AMCG00001779 NA coding downstream 530 15642819 ~ 15654841 (-)
AMCG00001777 ppp2r5d,LOC106605890 coding downstream 14738 15612676 ~ 15640633 (-)
AMCG00001774 NA coding downstream 79974 15552693 ~ 15575397 (-)
AMCG00001772 NA coding downstream 106927 15525698 ~ 15548444 (-)
AMCG00001773 NA coding downstream 181682 15450729 ~ 15473689 (-)
AMCG00001783 lrrc73 coding upstream 95892 15773330 ~ 15779288 (-)
AMCG00001792 yipf3,LOC107696384 coding upstream 103780 15781218 ~ 15784155 (-)
AMCG00001789 degs1,LOC106606739 coding upstream 121322 15798760 ~ 15817684 (-)
AMCG00001788 NA coding upstream 140845 15818283 ~ 15827775 (-)
AMCG00001790 rasgrp3,LOC106576952,LOC106606711 coding upstream 159586 15837024 ~ 15850756 (-)
G160319 NA non-coding downstream 44655 15603843 ~ 15610716 (-)
G160311 NA non-coding downstream 60016 15594607 ~ 15595355 (-)
G160132 NA non-coding downstream 1091866 14559152 ~ 14563505 (-)
G160094 NA non-coding downstream 1161722 14491898 ~ 14493649 (-)
G160085 NA non-coding downstream 1175012 14474242 ~ 14480359 (-)
G160387 fbxo28,LOC106576958 non-coding upstream 114558 15791996 ~ 15796358 (-)
G160538 NA non-coding upstream 556977 16234415 ~ 16235803 (-)
G160548 ryr2,LOC107395022,LOC102799451 non-coding upstream 637889 16315327 ~ 16315563 (-)
G160631 NA non-coding upstream 1139501 16816939 ~ 16817195 (-)
G160640 NA non-coding upstream 1177215 16854653 ~ 16854957 (-)
G160255 NA other downstream 134732 15504311 ~ 15520639 (-)
AMCG00001771 banf1,LOC105900308,LOC107086546,LOC106536379,LOC106576720 other downstream 153578 15499553 ~ 15501793 (-)
AMCG00001756 NA other downstream 1084444 14550689 ~ 14570927 (-)
AMCG00001733 NA other downstream 1182212 14463730 ~ 14473159 (-)
G159976 NA other downstream 1503816 14147628 ~ 14151555 (-)
AMCG00001784 NA other upstream 14131 15691569 ~ 15702500 (-)
AMCG00001791 fam98a other upstream 151320 15828758 ~ 15833806 (-)
AMCG00001843 NA other upstream 1413915 17091353 ~ 17092549 (-)
G160817 NA other upstream 1853428 17530866 ~ 17531990 (-)
AMCG00001865 NA other upstream 2130580 17808018 ~ 17810097 (-)

Expression


Co-expression Network