AMCG00001785 (degs1)


Basic Information

Item Value
gene id AMCG00001785
gene name degs1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 15798933 ~ 15803681 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001785
ATGGGGAACCGGGTCGCCCGCGATGATTACGAGTGGGTTTACACGGACCAGCCGCACGCCGACCGGAGGAAGGAGATCCTCGCCAAATATCCAGAGATTAAGTCCCTCATGGGCCCTGACCCGAGGATCAAATGGATCGTGTGTATGATGGTGTTGATCCAGTTTCTGGCGTTCTACCTGGTCAAAGACCTAGACTGGAAGTGGGTGCTATTCTGGACTTACGTTTTCGGCAGCTGTGTTAACCACTCCATGACTCTGGCCATCCACGAGAtctcacacaacacagccttcGGCAACAGCAAGGCCATGTGGAACCGCTGGTTTGCCATCTTTGCCAACCTGCCCATTGGCCTGCCCTATTCCGCCTCCTTCAAGAGGTACCACCTGGACCACCACCGCTACCTCGGCGGGGATGGCATCGACGTGGACATCCCCACCGAGTTCGAGGGTTGGTTCTTCTGCACGCGGTTCCGCAAGTTCATCTGGATCATCCTGCAGCCGCTGTTCTACGCCATCCGCCCGCTCTGCATCAACCCCAAGCCCATCGGCCACCTGGAGATCATCAACCTGGTCGTGCAGCTTGCCTTCAACGCCGCGCTCTACTACCTGTGGGGGGCCAAGCCCATGGTCTACATGCTGGCCGGCTCCATGCTGGGCATGGGCCTGCACCCCATCTCCGGCCACTTCATCGCAGAGCACTACATGTTCTTGAAGGGCCACGAGACTTACTCTTACTACGGCTCGCTCAACCTGCTCACCTTCAACGTGGGCTACCACAATGAGCACCACGACTTCCCCAGCATCCCTGGACGCCGGCTGCCTGAGGTGAAGAAGATCGCGTCGGAGTACTACGACGACCTGCCCCACTACACGTCGTGGGTGAAAGTGCTGTATGATTTTATTATGGACGACACCCTCAGCCCCTACTCCCGA

Function

symbol description
degs1 Predicted to enable sphingolipid delta-4 desaturase activity. Predicted to be involved in ceramide biosynthetic process. Predicted to act upstream of or within sphingolipid biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Is expressed in nervous system; neural crest; notochord; pronephric duct; and yolk syncytial layer. Used to study hypomyelinating leukodystrophy. Human ortholog(s) of this gene implicated in hypomyelinating leukodystrophy. Orthologous to human DEGS1 (delta 4-desaturase, sphingolipid 1).

NR:

description
sphingolipid delta(4)-desaturase DES1

GO:

id name namespace
GO:0006633 fatty acid biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function

KEGG:

id description
K04712 DEGS; sphingolipid 4-desaturase/C4-monooxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001785 True 933 mRNA 0.58 3 15798933 15803681

Neighbor

gene id symbol gene type direction distance location
AMCG00001786 fbxo28,LOC106606749 coding upstream 2498 15788706 ~ 15796435 (+)
AMCG00001787 rpac1,polr1c,LOC106576959 coding upstream 10495 15784945 ~ 15788438 (+)
AMCG00001782 lrrc73,LOC106605838 coding upstream 23431 15773679 ~ 15775502 (+)
AMCG00001780 NA coding upstream 29125 15719860 ~ 15769808 (+)
AMCG00001781 NA coding upstream 108187 15679825 ~ 15690746 (+)
AMCG00001797 NA coding downstream 250842 16054523 ~ 16060416 (+)
AMCG00001806 LOC107744706,LOC107081139 coding downstream 319359 16123040 ~ 16130281 (+)
AMCG00001805 NA coding downstream 329004 16132685 ~ 16146802 (+)
AMCG00001807 NA coding downstream 356863 16160544 ~ 16167624 (+)
AMCG00001800 LOC105010553 coding downstream 395467 16199148 ~ 16222274 (+)
G160200 NA non-coding upstream 381379 15402285 ~ 15417554 (+)
G160144 NA non-coding upstream 1097477 14701134 ~ 14701456 (+)
G160129 NA non-coding upstream 1166443 14629303 ~ 14632490 (+)
G160116 NA non-coding upstream 1235564 14558766 ~ 14563369 (+)
G160107 NA non-coding upstream 1272425 14525737 ~ 14526508 (+)
G160375 NA non-coding downstream 25095 15828776 ~ 15829766 (+)
G160463 NA non-coding downstream 310663 16114344 ~ 16114699 (+)
G160464 NA non-coding downstream 313524 16117205 ~ 16119266 (+)
G160542 tubb4b,LOC106575097,LOC105893757 non-coding downstream 473125 16276806 ~ 16278054 (+)
G160648 NA non-coding downstream 1096214 16899895 ~ 16902440 (+)
AMCG00001762 NA other upstream 359902 15432337 ~ 15439031 (+)
AMCG00001760 mpc1,LOC107725004,LOC106589821,LOC107693783 other upstream 464353 15331620 ~ 15334580 (+)
G160026 NA other upstream 1528743 14269615 ~ 14270190 (+)
AMCG00001691 NA other upstream 3465233 12329979 ~ 12333700 (+)
AMCG00001645 NA other upstream 5041075 10747489 ~ 10757858 (+)
AMCG00001814 ryr2,LOC106456445,LOC108410403,LOC106906861,LOC101062804,LOC103129799 other downstream 433581 16237262 ~ 16377860 (+)
AMCG00001841 NA other downstream 1375913 17179594 ~ 17182601 (+)
AMCG00001846 NA other downstream 1613670 17417351 ~ 17462934 (+)
AMCG00001881 NA other downstream 2384221 18187902 ~ 18209391 (+)
AMCG00001883 NA other downstream 2406328 18210009 ~ 18217138 (+)

Expression


Co-expression Network